Wall clock time and date at job start Tue Mar 31 2020 14:43:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09001 * 109.47005 * 2 1
4 4 C 1.50702 * 109.47161 * 240.00496 * 2 1 3
5 5 H 1.07996 * 119.99963 * 239.99681 * 4 2 1
6 6 C 1.37879 * 119.99841 * 59.99897 * 4 2 1
7 7 N 1.31510 * 120.00436 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99869 * 180.02562 * 6 4 2
9 9 H 1.48507 * 109.46841 * 359.97438 * 8 6 4
10 10 H 1.48500 * 109.47008 * 119.99618 * 8 6 4
11 11 H 1.48497 * 109.47326 * 239.99820 * 8 6 4
12 12 N 1.46900 * 109.47597 * 120.00171 * 2 1 3
13 13 C 1.46891 * 111.00120 * 176.04356 * 12 2 1
14 14 C 1.46898 * 110.99814 * 300.00361 * 12 2 1
15 15 C 1.53006 * 109.47006 * 169.99400 * 14 12 2
16 16 H 1.09007 * 109.46744 * 54.99841 * 15 14 12
17 17 C 1.52995 * 109.47234 * 295.00220 * 15 14 12
18 18 C 1.50703 * 109.47148 * 174.99877 * 15 14 12
19 19 C 1.38258 * 119.99458 * 240.00272 * 18 15 14
20 20 C 1.38217 * 120.02311 * 179.97438 * 19 18 15
21 21 C 1.38240 * 120.00460 * 0.02614 * 20 19 18
22 22 C 1.38307 * 119.99255 * 359.97438 * 21 20 19
23 23 Br 1.89102 * 120.00901 * 180.02562 * 22 21 20
24 24 C 1.38198 * 119.99317 * 59.72447 * 18 15 14
25 25 H 1.08997 * 109.47625 * 299.99566 * 1 2 3
26 26 H 1.08997 * 109.47577 * 59.99553 * 1 2 3
27 27 H 1.09004 * 109.47110 * 179.97438 * 1 2 3
28 28 H 0.97000 * 120.00674 * 180.02562 * 7 6 4
29 29 H 1.09008 * 109.47294 * 183.95307 * 13 12 2
30 30 H 1.08994 * 109.47718 * 303.95889 * 13 12 2
31 31 H 1.09007 * 109.47181 * 63.96365 * 13 12 2
32 32 H 1.09001 * 109.47062 * 49.99654 * 14 12 2
33 33 H 1.08993 * 109.47084 * 289.99101 * 14 12 2
34 34 H 1.09002 * 109.47112 * 179.97438 * 17 15 14
35 35 H 1.09006 * 109.47389 * 299.99793 * 17 15 14
36 36 H 1.09003 * 109.47743 * 59.99455 * 17 15 14
37 37 H 1.08006 * 119.98755 * 359.97438 * 19 18 15
38 38 H 1.07992 * 119.99799 * 180.02562 * 20 19 18
39 39 H 1.08003 * 120.00489 * 180.02562 * 21 20 19
40 40 H 1.07995 * 120.00306 * 0.02562 * 24 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1315
6 6 1.6991 -0.2391 -2.4828
7 7 0.9435 0.8304 -2.6034
8 14 2.3212 -1.1200 -4.0081
9 1 3.1464 -2.2867 -3.6039
10 1 1.1659 -1.5863 -4.8162
11 1 3.1464 -0.1870 -4.8166
12 7 2.0197 -0.6925 1.1994
13 6 3.4850 -0.7945 1.1869
14 6 1.5487 -0.0265 2.4210
15 6 1.8627 -0.9045 3.6341
16 1 2.9276 -1.1367 3.6485
17 6 1.0588 -2.2032 3.5454
18 6 1.4916 -0.1692 4.8961
19 6 2.4580 0.1042 5.8463
20 6 2.1184 0.7791 7.0037
21 6 0.8121 1.1806 7.2119
22 6 -0.1550 0.9073 6.2616
23 35 -1.9420 1.4570 6.5455
24 6 0.1866 0.2369 5.1007
25 1 -0.3634 0.5137 0.8900
26 1 -0.3634 0.5139 -0.8899
27 1 -0.3633 -1.0277 -0.0005
28 1 0.7088 1.1617 -3.4843
29 1 3.8164 -1.3722 2.0499
30 1 3.8069 -1.2914 0.2717
31 1 3.9192 0.2044 1.2300
32 1 0.4722 0.1323 2.3563
33 1 2.0519 0.9344 2.5281
34 1 1.2828 -2.8290 4.4093
35 1 -0.0062 -1.9711 3.5309
36 1 1.3271 -2.7352 2.6326
37 1 3.4786 -0.2098 5.6841
38 1 2.8736 0.9927 7.7455
39 1 0.5468 1.7083 8.1161
40 1 -0.5673 0.0269 4.3565
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000245801749.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:43:08
Heat of formation + Delta-G solvation = 23.943738 kcal
Electronic energy + Delta-G solvation = -19809.808006 eV
Core-core repulsion = 16863.462845 eV
Total energy + Delta-G solvation = -2946.345161 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.71891 -37.35703 -34.46869 -32.53297 -32.17647 -29.80915 -29.20182 -28.89250
-26.79702 -24.77349 -24.02630 -22.82981 -22.13914 -20.03964 -19.00771 -16.97500
-16.32368 -15.68088 -15.24502 -14.89058 -14.22137 -14.11999 -13.87631 -13.59323
-13.30656 -13.02885 -12.82122 -12.34043 -12.28046 -11.90481 -11.48057 -11.24625
-11.10732 -11.05868 -10.97935 -10.83306 -10.70641 -10.56881 -10.34725 -10.16882
-10.09487 -10.01306 -9.70417 -8.95088 -8.83391 -8.68954 -8.42034 -7.15832
-6.00784 -4.05252 1.02431 1.21136 1.53546 3.29497 3.37540 3.41424
3.53434 4.39866 4.60673 4.68230 4.92879 5.10133 5.18235 5.26545
5.32044 5.33501 5.56479 5.61223 5.68324 5.91321 6.08243 6.10606
6.13724 6.18807 6.19296 6.32135 6.39350 6.44275 6.59537 6.72344
6.75335 6.79663 6.87771 7.06466 7.17290 7.53380 7.73749 7.83421
8.21367 8.33101 8.60836 9.01631 9.59857 11.06088
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.020891 B = 0.003111 C = 0.002826
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1339.946124 B = 8998.944805 C = 9906.805566
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.212 3.788
3 H -0.003 1.003
4 C -0.502 4.502
5 H 0.064 0.936
6 C 0.058 3.942
7 N -0.893 5.893
8 Si 0.895 3.105
9 H -0.273 1.273
10 H -0.284 1.284
11 H -0.286 1.286
12 N -0.533 5.533
13 C 0.034 3.966
14 C 0.059 3.941
15 C -0.052 4.052
16 H 0.079 0.921
17 C -0.132 4.132
18 C -0.058 4.058
19 C -0.104 4.104
20 C -0.114 4.114
21 C -0.103 4.103
22 C -0.087 4.087
23 Br -0.058 7.058
24 C -0.084 4.084
25 H 0.008 0.992
26 H 0.084 0.916
27 H 0.034 0.966
28 H 0.259 0.741
29 H 0.043 0.957
30 H 0.077 0.923
31 H 0.009 0.991
32 H 0.076 0.924
33 H 0.020 0.980
34 H 0.042 0.958
35 H 0.051 0.949
36 H 0.077 0.923
37 H 0.127 0.873
38 H 0.128 0.872
39 H 0.128 0.872
40 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.598 0.249 21.214 21.276
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.106 3.894
3 H 0.014 0.986
4 C -0.541 4.541
5 H 0.082 0.918
6 C -0.143 4.143
7 N -0.532 5.532
8 Si 0.723 3.277
9 H -0.197 1.197
10 H -0.210 1.210
11 H -0.212 1.212
12 N -0.257 5.257
13 C -0.115 4.115
14 C -0.069 4.069
15 C -0.070 4.070
16 H 0.097 0.903
17 C -0.189 4.189
18 C -0.059 4.059
19 C -0.123 4.123
20 C -0.133 4.133
21 C -0.123 4.123
22 C -0.166 4.166
23 Br 0.027 6.973
24 C -0.103 4.103
25 H 0.026 0.974
26 H 0.103 0.897
27 H 0.053 0.947
28 H 0.069 0.931
29 H 0.062 0.938
30 H 0.095 0.905
31 H 0.027 0.973
32 H 0.094 0.906
33 H 0.038 0.962
34 H 0.061 0.939
35 H 0.070 0.930
36 H 0.096 0.904
37 H 0.145 0.855
38 H 0.146 0.854
39 H 0.146 0.854
40 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -2.552 0.097 21.151 21.304
hybrid contribution 0.996 0.447 -0.891 1.409
sum -1.556 0.544 20.260 20.327
Atomic orbital electron populations
1.21844 0.97759 0.99614 0.99822 1.19234 0.92301 0.91957 0.85915
0.98579 1.21196 1.30916 1.12236 0.89743 0.91774 1.24934 0.95234
0.95071 0.99022 1.69901 1.37003 1.23062 1.23277 0.86485 0.78590
0.79604 0.82981 1.19750 1.21043 1.21206 1.62102 1.09053 1.52563
1.02029 1.22266 0.89049 0.98701 1.01434 1.22161 1.01022 0.93893
0.89859 1.20277 1.00861 0.95426 0.90482 0.90272 1.21703 0.99399
0.95813 1.01963 1.20093 0.92590 0.96945 0.96290 1.21250 0.99480
0.97999 0.93548 1.21109 0.95716 0.98692 0.97799 1.21033 0.92573
1.00209 0.98517 1.21770 0.91169 1.05040 0.98642 1.96703 1.13806
1.90028 1.96756 1.21053 0.97015 0.96649 0.95623 0.97355 0.89734
0.94653 0.93066 0.93788 0.90456 0.97284 0.90602 0.96189 0.93906
0.93025 0.90362 0.85511 0.85370 0.85406 0.84813
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.21 8.76 37.15 0.33 -2.88 16
2 C 0.21 5.29 2.06 -68.87 -0.14 5.15 16
3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.52 16
4 C -0.50 -13.56 7.88 -34.44 -0.27 -13.83 16
5 H 0.06 1.72 6.40 -52.49 -0.34 1.39 16
6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16
7 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16
8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16
9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16
10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
12 N -0.53 -11.05 4.08 -236.29 -0.96 -12.01 16
13 C 0.03 0.65 9.05 60.06 0.54 1.19 16
14 C 0.06 1.05 3.90 -3.82 -0.01 1.04 16
15 C -0.05 -0.73 2.48 -91.77 -0.23 -0.96 16
16 H 0.08 1.09 6.07 -51.93 -0.32 0.77 16
17 C -0.13 -1.83 8.90 37.15 0.33 -1.50 16
18 C -0.06 -0.74 4.78 -104.63 -0.50 -1.24 16
19 C -0.10 -1.16 9.67 -39.58 -0.38 -1.55 16
20 C -0.11 -1.13 10.05 -39.59 -0.40 -1.53 16
21 C -0.10 -1.09 9.79 -39.56 -0.39 -1.48 16
22 C -0.09 -1.05 6.22 -39.52 -0.25 -1.30 16
23 Br -0.06 -0.66 33.70 -68.01 -2.29 -2.95 16
24 C -0.08 -1.09 8.50 -39.56 -0.34 -1.43 16
25 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16
26 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16
27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16
28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
29 H 0.04 0.70 6.37 -51.92 -0.33 0.37 16
30 H 0.08 1.59 6.10 -51.93 -0.32 1.27 16
31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
32 H 0.08 1.39 5.24 -51.93 -0.27 1.12 16
33 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16
34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16
35 H 0.05 0.71 7.40 -51.93 -0.38 0.33 16
36 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16
37 H 0.13 1.20 7.95 -52.48 -0.42 0.78 16
38 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16
39 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16
40 H 0.13 1.79 7.16 -52.49 -0.38 1.41 16
LS Contribution 335.14 15.07 5.05 5.05
Total: -1.00 -28.04 335.14 -10.28 -38.32
By element:
Atomic # 1 Polarization: 4.92 SS G_CDS: -5.88 Total: -0.96 kcal
Atomic # 6 Polarization: -17.02 SS G_CDS: -1.80 Total: -18.82 kcal
Atomic # 7 Polarization: -36.45 SS G_CDS: -0.34 Total: -36.78 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal
Atomic # 35 Polarization: -0.66 SS G_CDS: -2.29 Total: -2.95 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -28.04 -10.28 -38.32 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000245801749.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.260 kcal
(2) G-P(sol) polarization free energy of solvation -28.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.225 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.944 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds