Wall clock time and date at job start Tue Mar 31 2020 14:43:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09001 * 109.47005 * 2 1
4 4 C 1.50702 * 109.47161 * 240.00496 * 2 1 3
5 5 H 1.07996 * 119.99963 * 239.99681 * 4 2 1
6 6 C 1.37879 * 119.99841 * 59.99897 * 4 2 1
7 7 N 1.31510 * 120.00436 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99869 * 180.02562 * 6 4 2
9 9 H 1.48507 * 109.46841 * 359.97438 * 8 6 4
10 10 H 1.48500 * 109.47008 * 119.99618 * 8 6 4
11 11 H 1.48497 * 109.47326 * 239.99820 * 8 6 4
12 12 N 1.46900 * 109.47597 * 120.00171 * 2 1 3
13 13 C 1.46891 * 111.00120 * 176.04356 * 12 2 1
14 14 C 1.46898 * 110.99814 * 300.00361 * 12 2 1
15 15 C 1.53006 * 109.47006 * 169.99400 * 14 12 2
16 16 H 1.09007 * 109.46744 * 54.99841 * 15 14 12
17 17 C 1.52995 * 109.47234 * 295.00220 * 15 14 12
18 18 C 1.50703 * 109.47148 * 174.99877 * 15 14 12
19 19 C 1.38258 * 119.99458 * 240.00272 * 18 15 14
20 20 C 1.38217 * 120.02311 * 179.97438 * 19 18 15
21 21 C 1.38240 * 120.00460 * 0.02614 * 20 19 18
22 22 C 1.38307 * 119.99255 * 359.97438 * 21 20 19
23 23 Br 1.89102 * 120.00901 * 180.02562 * 22 21 20
24 24 C 1.38198 * 119.99317 * 59.72447 * 18 15 14
25 25 H 1.08997 * 109.47625 * 299.99566 * 1 2 3
26 26 H 1.08997 * 109.47577 * 59.99553 * 1 2 3
27 27 H 1.09004 * 109.47110 * 179.97438 * 1 2 3
28 28 H 0.97000 * 120.00674 * 180.02562 * 7 6 4
29 29 H 1.09008 * 109.47294 * 183.95307 * 13 12 2
30 30 H 1.08994 * 109.47718 * 303.95889 * 13 12 2
31 31 H 1.09007 * 109.47181 * 63.96365 * 13 12 2
32 32 H 1.09001 * 109.47062 * 49.99654 * 14 12 2
33 33 H 1.08993 * 109.47084 * 289.99101 * 14 12 2
34 34 H 1.09002 * 109.47112 * 179.97438 * 17 15 14
35 35 H 1.09006 * 109.47389 * 299.99793 * 17 15 14
36 36 H 1.09003 * 109.47743 * 59.99455 * 17 15 14
37 37 H 1.08006 * 119.98755 * 359.97438 * 19 18 15
38 38 H 1.07992 * 119.99799 * 180.02562 * 20 19 18
39 39 H 1.08003 * 120.00489 * 180.02562 * 21 20 19
40 40 H 1.07995 * 120.00306 * 0.02562 * 24 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1315
6 6 1.6991 -0.2391 -2.4828
7 7 0.9435 0.8304 -2.6034
8 14 2.3212 -1.1200 -4.0081
9 1 3.1464 -2.2867 -3.6039
10 1 1.1659 -1.5863 -4.8162
11 1 3.1464 -0.1870 -4.8166
12 7 2.0197 -0.6925 1.1994
13 6 3.4850 -0.7945 1.1869
14 6 1.5487 -0.0265 2.4210
15 6 1.8627 -0.9045 3.6341
16 1 2.9276 -1.1367 3.6485
17 6 1.0588 -2.2032 3.5454
18 6 1.4916 -0.1692 4.8961
19 6 2.4580 0.1042 5.8463
20 6 2.1184 0.7791 7.0037
21 6 0.8121 1.1806 7.2119
22 6 -0.1550 0.9073 6.2616
23 35 -1.9420 1.4570 6.5455
24 6 0.1866 0.2369 5.1007
25 1 -0.3634 0.5137 0.8900
26 1 -0.3634 0.5139 -0.8899
27 1 -0.3633 -1.0277 -0.0005
28 1 0.7088 1.1617 -3.4843
29 1 3.8164 -1.3722 2.0499
30 1 3.8069 -1.2914 0.2717
31 1 3.9192 0.2044 1.2300
32 1 0.4722 0.1323 2.3563
33 1 2.0519 0.9344 2.5281
34 1 1.2828 -2.8290 4.4093
35 1 -0.0062 -1.9711 3.5309
36 1 1.3271 -2.7352 2.6326
37 1 3.4786 -0.2098 5.6841
38 1 2.8736 0.9927 7.7455
39 1 0.5468 1.7083 8.1161
40 1 -0.5673 0.0269 4.3565
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000245801749.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:43:07
Heat of formation + Delta-G solvation = 10.220323 kcal
Electronic energy + Delta-G solvation = -19810.403098 eV
Core-core repulsion = 16863.462845 eV
Total energy + Delta-G solvation = -2946.940252 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.69093 -38.88657 -35.90435 -34.25832 -33.12814 -31.23753 -30.46211 -30.01017
-28.39649 -26.60671 -25.45278 -24.05036 -23.13996 -21.53181 -20.47133 -18.36559
-17.91577 -17.01216 -16.57259 -16.10932 -15.85105 -15.48899 -15.21586 -14.75352
-14.44822 -14.31601 -14.11995 -13.91091 -13.81129 -13.14602 -12.94815 -12.79566
-12.71061 -12.58207 -12.28485 -12.25110 -12.08154 -11.98916 -11.92101 -11.71771
-11.67495 -11.23433 -11.18034 -10.84151 -10.50571 -9.81500 -9.60778 -8.89848
-8.10177 -6.21886 0.15217 0.33421 0.65365 1.41954 1.43990 1.55527
2.43061 2.65613 3.17991 3.34438 3.77517 3.84691 4.05856 4.16364
4.31663 4.35362 4.44848 4.50344 4.59177 4.69679 4.74818 4.77063
4.91148 4.96383 5.01701 5.04908 5.11340 5.13996 5.18377 5.26784
5.32488 5.40579 5.49052 5.52197 5.67759 5.74391 5.80389 5.89652
6.26825 6.41666 6.75862 6.93932 7.47538 8.96219
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.020891 B = 0.003111 C = 0.002826
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1339.946124 B = 8998.944805 C = 9906.805566
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C 0.216 3.784
3 H -0.043 1.043
4 C -0.516 4.516
5 H 0.063 0.937
6 C 0.010 3.990
7 N -0.923 5.923
8 Si 0.960 3.040
9 H -0.265 1.265
10 H -0.282 1.282
11 H -0.283 1.283
12 N -0.534 5.534
13 C 0.037 3.963
14 C 0.064 3.936
15 C -0.039 4.039
16 H 0.090 0.910
17 C -0.127 4.127
18 C -0.073 4.073
19 C -0.105 4.105
20 C -0.108 4.108
21 C -0.102 4.102
22 C -0.100 4.100
23 Br -0.058 7.058
24 C -0.099 4.099
25 H 0.026 0.974
26 H 0.057 0.943
27 H 0.033 0.967
28 H 0.260 0.740
29 H 0.081 0.919
30 H 0.059 0.941
31 H 0.003 0.997
32 H 0.064 0.936
33 H 0.009 0.991
34 H 0.063 0.937
35 H 0.045 0.955
36 H 0.059 0.941
37 H 0.147 0.853
38 H 0.162 0.838
39 H 0.148 0.852
40 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.359 -0.509 23.035 23.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.109 3.891
3 H -0.026 1.026
4 C -0.554 4.554
5 H 0.081 0.919
6 C -0.189 4.189
7 N -0.563 5.563
8 Si 0.786 3.214
9 H -0.189 1.189
10 H -0.207 1.207
11 H -0.209 1.209
12 N -0.258 5.258
13 C -0.111 4.111
14 C -0.064 4.064
15 C -0.057 4.057
16 H 0.108 0.892
17 C -0.184 4.184
18 C -0.074 4.074
19 C -0.123 4.123
20 C -0.126 4.126
21 C -0.122 4.122
22 C -0.180 4.180
23 Br 0.027 6.973
24 C -0.119 4.119
25 H 0.045 0.955
26 H 0.076 0.924
27 H 0.052 0.948
28 H 0.070 0.930
29 H 0.099 0.901
30 H 0.078 0.922
31 H 0.021 0.979
32 H 0.083 0.917
33 H 0.027 0.973
34 H 0.082 0.918
35 H 0.064 0.936
36 H 0.078 0.922
37 H 0.165 0.835
38 H 0.179 0.821
39 H 0.166 0.834
40 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -1.308 -0.671 22.990 23.037
hybrid contribution 0.607 0.729 -1.360 1.658
sum -0.702 0.059 21.630 21.642
Atomic orbital electron populations
1.21647 0.97485 0.99223 0.99400 1.19029 0.92522 0.89997 0.87572
1.02559 1.21480 1.30901 1.12241 0.90792 0.91870 1.25730 0.95410
0.95749 1.01990 1.70036 1.37981 1.24342 1.23914 0.85473 0.78078
0.78637 0.79235 1.18898 1.20748 1.20887 1.62050 1.10173 1.51971
1.01645 1.22274 0.87882 0.98733 1.02245 1.22168 1.00022 0.94154
0.90089 1.20111 1.01385 0.94812 0.89428 0.89233 1.21641 0.99041
0.95806 1.01907 1.19974 0.93042 0.98077 0.96317 1.21519 0.99932
0.97507 0.93364 1.21489 0.96075 0.97200 0.97845 1.21371 0.92593
0.99556 0.98669 1.21904 0.91719 1.05446 0.98882 1.96695 1.13955
1.89977 1.96671 1.21018 0.97090 0.97765 0.96054 0.95522 0.92384
0.94814 0.93045 0.90088 0.92175 0.97892 0.91748 0.97276 0.91831
0.93597 0.92188 0.83539 0.82063 0.83398 0.86136
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.96 8.76 71.98 0.63 -5.33 16
2 C 0.22 11.09 2.06 44.17 0.09 11.18 16
3 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 16
4 C -0.52 -28.30 7.88 25.60 0.20 -28.10 16
5 H 0.06 3.41 6.40 -2.91 -0.02 3.39 16
6 C 0.01 0.53 5.30 84.66 0.45 0.98 16
7 N -0.92 -53.68 11.32 21.45 0.24 -53.44 16
8 Si 0.96 43.69 29.54 68.60 2.03 45.71 16
9 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16
10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16
11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
12 N -0.53 -22.28 4.08 -901.50 -3.68 -25.96 16
13 C 0.04 1.39 9.05 127.69 1.16 2.54 16
14 C 0.06 2.27 3.90 86.31 0.34 2.60 16
15 C -0.04 -1.04 2.48 -11.54 -0.03 -1.07 16
16 H 0.09 2.22 6.07 -2.38 -0.01 2.21 16
17 C -0.13 -3.38 8.90 71.98 0.64 -2.74 16
18 C -0.07 -1.75 4.78 -19.87 -0.09 -1.85 16
19 C -0.11 -2.01 9.67 22.27 0.22 -1.80 16
20 C -0.11 -1.74 10.05 22.27 0.22 -1.51 16
21 C -0.10 -1.88 9.79 22.29 0.22 -1.66 16
22 C -0.10 -2.29 6.22 22.31 0.14 -2.15 16
23 Br -0.06 -1.27 33.70 -20.37 -0.69 -1.96 16
24 C -0.10 -2.53 8.50 22.28 0.19 -2.34 16
25 H 0.03 1.18 6.20 -2.39 -0.01 1.16 16
26 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16
27 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16
28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16
29 H 0.08 2.42 6.37 -2.38 -0.02 2.41 16
30 H 0.06 2.46 6.10 -2.39 -0.01 2.44 16
31 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16
32 H 0.06 2.41 5.24 -2.39 -0.01 2.40 16
33 H 0.01 0.34 8.12 -2.39 -0.02 0.32 16
34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16
35 H 0.04 1.26 7.40 -2.38 -0.02 1.24 16
36 H 0.06 1.81 7.75 -2.39 -0.02 1.80 16
37 H 0.15 2.19 7.95 -2.91 -0.02 2.17 16
38 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16
39 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16
40 H 0.12 3.29 7.16 -2.91 -0.02 3.27 16
Total: -1.00 -61.21 335.14 3.30 -57.91
By element:
Atomic # 1 Polarization: 7.96 SS G_CDS: 1.02 Total: 8.98 kcal
Atomic # 6 Polarization: -35.61 SS G_CDS: 4.37 Total: -31.25 kcal
Atomic # 7 Polarization: -75.97 SS G_CDS: -3.43 Total: -79.40 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal
Atomic # 35 Polarization: -1.27 SS G_CDS: -0.69 Total: -1.96 kcal
Total: -61.21 3.30 -57.91 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000245801749.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.134 kcal
(2) G-P(sol) polarization free energy of solvation -61.209 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.220 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds