Wall clock time and date at job start Tue Mar 31 2020 14:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47250 * 120.00329 * 2 1 3 5 5 C 1.50695 * 109.46970 * 185.00106 * 4 2 1 6 6 H 1.07994 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99941 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99750 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47296 * 89.99526 * 9 7 5 11 11 H 1.48502 * 109.47256 * 209.99504 * 9 7 5 12 12 H 1.48499 * 109.47077 * 329.99852 * 9 7 5 13 13 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 14 14 C 1.46901 * 111.00443 * 306.04832 * 13 2 1 15 15 C 1.46906 * 110.99820 * 70.00145 * 13 2 1 16 16 C 1.52996 * 109.47022 * 169.99926 * 15 13 2 17 17 C 1.50708 * 109.46924 * 180.02562 * 16 15 13 18 18 C 1.38240 * 119.98664 * 269.72410 * 17 16 15 19 19 C 1.38224 * 120.00403 * 179.77015 * 18 17 16 20 20 C 1.38321 * 119.99349 * 0.50248 * 19 18 17 21 21 Br 1.89092 * 120.01359 * 179.72584 * 20 19 18 22 22 C 1.38324 * 119.97899 * 359.75254 * 20 19 18 23 23 C 1.38228 * 119.99059 * 359.97438 * 22 20 19 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46734 * 304.99818 * 4 2 1 28 28 H 1.08992 * 109.47535 * 64.99500 * 4 2 1 29 29 H 0.97004 * 120.00114 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47401 * 183.95136 * 14 13 2 31 31 H 1.09001 * 109.46874 * 63.95149 * 14 13 2 32 32 H 1.09004 * 109.46970 * 303.95282 * 14 13 2 33 33 H 1.08997 * 109.46995 * 289.99871 * 15 13 2 34 34 H 1.09001 * 109.46848 * 49.99877 * 15 13 2 35 35 H 1.08997 * 109.47190 * 299.99825 * 16 15 13 36 36 H 1.09001 * 109.47349 * 60.00258 * 16 15 13 37 37 H 1.07995 * 119.99887 * 0.02562 * 18 17 16 38 38 H 1.08006 * 120.00063 * 180.23239 * 19 18 17 39 39 H 1.07995 * 120.00817 * 179.97438 * 22 20 19 40 40 H 1.07999 * 119.99295 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1936 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0922 -1.0624 2.4360 10 1 6.4711 0.1598 3.1896 11 1 6.6443 -2.2580 3.1222 12 1 6.6413 -0.9845 1.0584 13 7 2.0196 -0.6926 -1.1994 14 6 1.4343 -2.0355 -1.3078 15 6 1.7529 0.0972 -2.4090 16 6 2.4884 -0.5257 -3.5972 17 6 2.2152 0.2848 -4.8381 18 6 1.1371 -0.0286 -5.6446 19 6 0.8834 0.7176 -6.7802 20 6 1.7145 1.7714 -7.1151 21 35 1.3725 2.7876 -8.6726 22 6 2.7961 2.0813 -6.3105 23 6 3.0458 1.3381 -5.1721 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -0.2618 2.1370 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2448 4.0348 30 1 1.8663 -2.5522 -2.1648 31 1 0.3555 -1.9520 -1.4399 32 1 1.6466 -2.5988 -0.3991 33 1 0.6814 0.1052 -2.6087 34 1 2.1025 1.1188 -2.2603 35 1 3.5599 -0.5338 -3.3976 36 1 2.1387 -1.5474 -3.7460 37 1 0.4906 -0.8539 -5.3853 38 1 0.0389 0.4750 -7.4083 39 1 3.4455 2.9037 -6.5718 40 1 3.8906 1.5798 -4.5441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276322618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:59 Heat of formation + Delta-G solvation = 3.575795 kcal Electronic energy + Delta-G solvation = -19292.873150 eV Core-core repulsion = 16345.644770 eV Total energy + Delta-G solvation = -2947.228381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.49341 -39.29839 -35.48675 -34.46006 -32.62826 -32.00732 -31.13174 -29.20181 -28.70480 -26.82424 -25.19407 -23.77391 -23.30677 -21.57874 -20.30762 -18.34021 -17.72439 -16.91116 -16.66414 -16.51971 -15.91658 -15.59310 -15.45683 -14.68220 -14.43881 -14.25312 -14.09551 -13.98010 -13.79715 -13.39313 -13.04505 -12.91544 -12.83966 -12.58134 -12.37082 -12.30476 -12.23043 -11.97649 -11.81803 -11.62874 -11.51402 -11.25555 -11.07057 -10.97813 -10.45816 -9.98274 -9.51311 -8.87918 -8.07970 -6.12557 0.09852 0.35376 0.65086 1.43586 1.44273 1.55747 2.49301 2.61657 3.15895 3.30036 3.79896 3.96928 3.99312 4.12853 4.23380 4.29998 4.41526 4.44771 4.50316 4.57748 4.59357 4.67474 4.74850 4.82620 4.95111 4.99200 5.07331 5.17984 5.22009 5.23636 5.24417 5.27376 5.35944 5.51861 5.65827 5.73297 5.86811 5.92510 6.34551 6.48187 6.55313 7.01682 7.53235 9.04113 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.002372 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.590236 B =11802.800368 C =12431.543865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.061 0.939 4 C 0.035 3.965 5 C -0.498 4.498 6 H 0.059 0.941 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.536 5.536 14 C 0.028 3.972 15 C 0.067 3.933 16 C -0.073 4.073 17 C -0.063 4.063 18 C -0.114 4.114 19 C -0.093 4.093 20 C -0.108 4.108 21 Br -0.054 7.054 22 C -0.094 4.094 23 C -0.117 4.117 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.053 0.947 27 H -0.011 1.011 28 H -0.001 1.001 29 H 0.258 0.742 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 7.381 -26.186 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.003 4.003 5 C -0.536 4.536 6 H 0.077 0.923 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.260 5.260 14 C -0.119 4.119 15 C -0.060 4.060 16 C -0.111 4.111 17 C -0.064 4.064 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.187 4.187 21 Br 0.031 6.969 22 C -0.114 4.114 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.008 0.992 28 H 0.017 0.983 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.046 7.624 -26.582 28.307 hybrid contribution 0.157 -0.233 0.938 0.980 sum -5.889 7.390 -25.644 27.329 Atomic orbital electron populations 1.22383 0.97319 1.01737 1.01808 1.21605 0.91966 0.97074 0.90687 0.92035 1.19070 0.95229 0.94505 0.91453 1.21499 0.93269 1.32224 1.06616 0.92321 1.25862 1.02868 0.95703 0.95796 1.70095 1.37085 1.38109 1.13085 0.85580 0.80658 0.77273 0.78306 1.20278 1.21383 1.18975 1.61983 1.59317 1.02969 1.01690 1.22355 0.96900 0.90849 1.01843 1.22028 0.97836 0.97042 0.89133 1.20578 1.01720 0.98610 0.90167 1.20106 0.94840 0.95605 0.95858 1.21292 0.97422 1.00437 0.94116 1.21303 0.98965 0.93646 0.97373 1.21924 1.00760 0.99962 0.96091 1.96699 1.95662 1.71033 1.33517 1.21280 0.96167 0.99950 0.94013 1.21303 1.00312 0.95178 0.96837 0.92688 0.91727 0.92753 0.99232 0.98298 0.93331 0.90455 0.94828 0.93654 0.94408 0.91759 0.90729 0.89935 0.83684 0.83627 0.83967 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 8.44 71.98 0.61 -5.07 16 2 C 0.09 3.78 2.26 44.92 0.10 3.88 16 3 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 4 C 0.03 1.78 4.37 29.85 0.13 1.92 16 5 C -0.50 -28.02 8.84 25.60 0.23 -27.80 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 8 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 9 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.54 -19.05 4.43 -897.03 -3.97 -23.02 16 14 C 0.03 0.93 8.44 127.69 1.08 2.01 16 15 C 0.07 1.84 4.51 86.30 0.39 2.23 16 16 C -0.07 -1.68 5.27 29.85 0.16 -1.52 16 17 C -0.06 -1.28 5.13 -19.86 -0.10 -1.38 16 18 C -0.11 -2.03 9.70 22.27 0.22 -1.81 16 19 C -0.09 -1.60 9.79 22.29 0.22 -1.39 16 20 C -0.11 -2.00 6.22 22.31 0.14 -1.86 16 21 Br -0.05 -0.91 33.70 -20.37 -0.69 -1.60 16 22 C -0.09 -1.74 9.79 22.29 0.22 -1.53 16 23 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 24 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.06 1.79 6.91 -2.39 -0.02 1.77 16 26 H 0.05 1.76 6.42 -2.39 -0.02 1.75 16 27 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 28 H 0.00 -0.07 6.26 -2.39 -0.01 -0.08 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.08 2.15 6.47 -2.39 -0.02 2.14 16 31 H 0.03 0.97 6.46 -2.39 -0.02 0.95 16 32 H 0.04 1.79 6.21 -2.38 -0.01 1.78 16 33 H 0.04 0.96 7.06 -2.39 -0.02 0.94 16 34 H 0.06 1.82 7.93 -2.39 -0.02 1.80 16 35 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 36 H 0.08 1.76 6.49 -2.39 -0.02 1.74 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 40 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -63.54 340.99 2.72 -60.82 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.01 Total: 8.35 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 4.06 Total: -34.34 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -3.69 Total: -80.44 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -0.69 Total: -1.60 kcal Total: -63.54 2.72 -60.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276322618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.394 kcal (2) G-P(sol) polarization free energy of solvation -63.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds