Wall clock time and date at job start Tue Mar 31 2020 13:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39800 * 120.48854 * 187.43907 * 3 2 1 5 5 C 1.39796 * 118.14617 * 180.02562 * 4 3 2 6 6 C 1.47744 * 120.49390 * 180.02562 * 5 4 3 7 7 O 1.21588 * 119.99973 * 319.13402 * 6 5 4 8 8 N 1.34772 * 119.99612 * 139.12981 * 6 5 4 9 9 C 1.36876 * 120.00016 * 184.56931 * 8 6 5 10 10 H 1.08000 * 120.00367 * 224.27700 * 9 8 6 11 11 C 1.39049 * 119.99907 * 44.26755 * 9 8 6 12 12 N 1.31362 * 119.99905 * 9.75725 * 11 9 8 13 13 Si 1.86800 * 120.00313 * 189.74971 * 11 9 8 14 14 H 1.48504 * 109.46993 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46890 * 120.00137 * 13 11 9 16 16 H 1.48501 * 109.47501 * 240.00452 * 13 11 9 17 17 C 1.46498 * 120.00404 * 4.57426 * 8 6 5 18 18 C 1.53000 * 117.50136 * 185.60383 * 17 8 6 19 19 C 1.53004 * 60.00163 * 252.50812 * 18 17 8 20 20 C 1.39732 * 119.01276 * 359.97438 * 5 4 3 21 21 N 1.31720 * 120.88640 * 0.28085 * 20 5 4 22 22 C 1.31773 * 122.04814 * 359.42775 * 21 20 5 23 23 C 1.50709 * 119.55094 * 180.31724 * 22 21 20 24 24 F 1.39903 * 109.46886 * 270.24961 * 23 22 21 25 25 F 1.39900 * 109.46844 * 30.24943 * 23 22 21 26 26 F 1.39895 * 109.46842 * 150.25132 * 23 22 21 27 27 H 1.07999 * 120.92675 * 0.04258 * 4 3 2 28 28 H 0.96995 * 120.00360 * 184.99060 * 12 11 9 29 29 H 1.09000 * 115.55070 * 331.30865 * 17 8 6 30 30 H 1.09005 * 117.50030 * 359.97438 * 18 17 8 31 31 H 1.09000 * 117.50515 * 145.02251 * 18 17 8 32 32 H 1.09003 * 117.50111 * 252.51321 * 19 18 17 33 33 H 1.09002 * 117.51905 * 107.47553 * 19 18 17 34 34 H 1.07999 * 119.56072 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2768 1.1955 0.1560 5 6 4.6736 1.1396 0.1480 6 6 5.4742 2.3708 0.3093 7 8 5.1340 3.3948 -0.2510 8 7 6.5814 2.3587 1.0775 9 6 7.2707 3.5196 1.3029 10 1 8.3488 3.5284 1.2402 11 6 6.5828 4.6877 1.6125 12 7 5.2969 4.6421 1.8772 13 14 7.4871 6.3217 1.6521 14 1 8.9179 6.1038 1.3193 15 1 6.8834 7.2457 0.6587 16 1 7.3790 6.9146 3.0094 17 6 7.0474 1.1032 1.6713 18 6 8.2312 1.1753 2.6379 19 6 8.4204 0.5841 1.2395 20 6 5.3014 -0.0983 -0.0136 21 7 4.5952 -1.2002 -0.1625 22 6 3.2775 -1.1926 -0.1555 23 6 2.5258 -2.4880 -0.3235 24 9 2.2923 -2.7185 -1.6835 25 9 3.2839 -3.5388 0.2042 26 9 1.3038 -2.4090 0.3527 27 1 2.7596 2.1356 0.2794 28 1 4.8021 5.4637 2.0218 29 1 6.2726 0.3649 1.8783 30 1 8.6636 2.1570 2.8318 31 1 8.2354 0.4846 3.4811 32 1 8.5490 -0.4956 1.1626 33 1 8.9768 1.1767 0.5132 34 1 6.3800 -0.1517 -0.0215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294103902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:46 Heat of formation + Delta-G solvation = -59.318738 kcal Electronic energy + Delta-G solvation = -27367.794791 eV Core-core repulsion = 22853.469456 eV Total energy + Delta-G solvation = -4514.325335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.31420 -47.86570 -47.73572 -40.78102 -38.69287 -36.71176 -36.39866 -33.34260 -32.77828 -32.54105 -31.04976 -27.46412 -25.43809 -24.72589 -23.12774 -21.96429 -21.69907 -20.48878 -19.16950 -18.69665 -18.66711 -18.55132 -16.95297 -16.52790 -16.33190 -15.26747 -15.01989 -14.74634 -14.62135 -14.54717 -14.23876 -14.21165 -13.98887 -13.90950 -13.89071 -13.62461 -13.38898 -13.21902 -13.04043 -13.02651 -12.89703 -12.17137 -11.99916 -11.36158 -11.16991 -11.11249 -10.96152 -10.36342 -10.29345 -10.17886 -10.02034 -9.94285 -9.33266 -9.04433 -8.46987 -7.39463 -6.38534 -4.21116 0.08643 0.77798 2.23227 2.47009 2.68481 3.14311 3.21947 3.25188 3.32433 3.35516 3.45047 3.68126 3.88436 4.02207 4.22625 4.41519 4.46801 4.58252 4.71722 4.78795 4.92352 5.11428 5.24998 5.32512 5.49429 5.57423 5.74140 5.97803 6.03265 6.14414 6.24857 6.49235 6.71209 7.22682 7.32220 7.37482 7.91481 8.67755 8.76401 9.25474 9.85587 10.66036 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.004060 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.669034 B = 6894.075156 C = 7948.986513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C 0.248 3.752 3 C -0.033 4.033 4 C 0.013 3.987 5 C -0.105 4.105 6 C 0.508 3.492 7 O -0.512 6.512 8 N -0.406 5.406 9 C -0.330 4.330 10 H 0.088 0.912 11 C 0.061 3.939 12 N -0.824 5.824 13 Si 0.919 3.081 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.282 1.282 17 C 0.051 3.949 18 C -0.168 4.168 19 C -0.205 4.205 20 C 0.136 3.864 21 N -0.439 5.439 22 C 0.069 3.931 23 C 0.522 3.478 24 F -0.167 7.167 25 F -0.159 7.159 26 F -0.169 7.169 27 H 0.165 0.835 28 H 0.270 0.730 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 -11.047 -1.028 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.060 5.060 2 C -0.068 4.068 3 C -0.040 4.040 4 C -0.016 4.016 5 C -0.111 4.111 6 C 0.295 3.705 7 O -0.389 6.389 8 N -0.125 5.125 9 C -0.457 4.457 10 H 0.106 0.894 11 C -0.150 4.150 12 N -0.457 5.457 13 Si 0.745 3.255 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.208 1.208 17 C -0.055 4.055 18 C -0.206 4.206 19 C -0.244 4.244 20 C -0.022 4.022 21 N -0.146 5.146 22 C -0.075 4.075 23 C 0.467 3.533 24 F -0.149 7.149 25 F -0.140 7.140 26 F -0.150 7.150 27 H 0.183 0.817 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.112 -11.191 -1.316 11.322 hybrid contribution 0.205 1.309 0.259 1.350 sum -0.907 -9.882 -1.057 9.980 Atomic orbital electron populations 1.81211 1.11305 1.06617 1.06865 1.25104 0.92089 0.94593 0.95012 1.16397 0.85889 0.94631 1.07060 1.21868 0.93106 0.97094 0.89486 1.21907 0.94535 0.97315 0.97364 1.17275 0.83947 0.85991 0.83321 1.90682 1.69151 1.31645 1.47443 1.42682 1.23851 1.05371 1.40574 1.19113 0.91628 0.85546 1.49371 0.89399 1.25355 0.95565 1.00083 0.94020 1.69790 1.07715 1.29053 1.39145 0.86025 0.79634 0.82148 0.77705 1.19275 1.20441 1.20830 1.22092 0.90351 0.90999 1.02026 1.23125 1.02110 1.03070 0.92284 1.23434 1.01541 1.00123 0.99309 1.23681 1.01281 0.85644 0.91589 1.67237 1.04532 1.31841 1.11018 1.20947 0.91924 0.90936 1.03660 1.17837 0.77013 0.83935 0.74551 1.93250 1.94591 1.95100 1.31935 1.93242 1.75488 1.59165 1.86145 1.93236 1.45456 1.96040 1.80258 0.81743 0.91981 0.87385 0.87225 0.89366 0.89012 0.88480 0.79591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.19 18.38 41.84 0.77 -5.43 16 2 C 0.25 3.71 12.56 -22.47 -0.28 3.42 16 3 C -0.03 -0.48 5.72 -106.84 -0.61 -1.09 16 4 C 0.01 0.20 9.54 -38.42 -0.37 -0.17 16 5 C -0.10 -1.81 5.29 -104.87 -0.55 -2.37 16 6 C 0.51 11.21 6.47 -12.38 -0.08 11.13 16 7 O -0.51 -13.40 14.65 5.29 0.08 -13.33 16 8 N -0.41 -8.72 2.85 -108.83 -0.31 -9.03 16 9 C -0.33 -7.84 7.85 -15.00 -0.12 -7.95 16 10 H 0.09 2.00 7.32 -52.49 -0.38 1.61 16 11 C 0.06 1.53 4.66 -17.45 -0.08 1.45 16 12 N -0.82 -21.83 11.26 55.50 0.62 -21.21 16 13 Si 0.92 19.60 29.57 -169.99 -5.03 14.57 16 14 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 17 C 0.05 0.85 4.39 -67.93 -0.30 0.55 16 18 C -0.17 -2.53 9.80 -26.73 -0.26 -2.79 16 19 C -0.21 -2.81 9.55 -26.73 -0.26 -3.07 16 20 C 0.14 1.99 8.65 -17.04 -0.15 1.84 16 21 N -0.44 -6.26 9.93 -8.78 -0.09 -6.35 16 22 C 0.07 0.97 6.34 -82.07 -0.52 0.45 16 23 C 0.52 6.98 3.23 36.01 0.12 7.09 16 24 F -0.17 -2.23 17.30 2.25 0.04 -2.19 16 25 F -0.16 -2.09 17.04 2.25 0.04 -2.06 16 26 F -0.17 -2.31 14.48 2.25 0.03 -2.28 16 27 H 0.17 2.64 8.06 -52.49 -0.42 2.21 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.11 1.64 5.85 -51.93 -0.30 1.34 16 30 H 0.11 1.84 6.79 -51.93 -0.35 1.48 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.19 2.44 5.51 -52.49 -0.29 2.15 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -28.08 317.11 -4.68 -32.76 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -2.16 Total: 1.24 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -3.46 Total: 8.51 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 1.00 Total: -42.01 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.11 Total: -6.52 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.08 -4.68 -32.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294103902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.558 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds