Wall clock time and date at job start Tue Mar 31 2020 13:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39800 * 120.48854 * 187.43907 * 3 2 1 5 5 C 1.39796 * 118.14617 * 180.02562 * 4 3 2 6 6 C 1.47744 * 120.49390 * 180.02562 * 5 4 3 7 7 O 1.21588 * 119.99973 * 319.13402 * 6 5 4 8 8 N 1.34772 * 119.99612 * 139.12981 * 6 5 4 9 9 C 1.36876 * 120.00016 * 184.56931 * 8 6 5 10 10 H 1.08000 * 120.00367 * 224.27700 * 9 8 6 11 11 C 1.39049 * 119.99907 * 44.26755 * 9 8 6 12 12 N 1.31362 * 119.99905 * 9.75725 * 11 9 8 13 13 Si 1.86800 * 120.00313 * 189.74971 * 11 9 8 14 14 H 1.48504 * 109.46993 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46890 * 120.00137 * 13 11 9 16 16 H 1.48501 * 109.47501 * 240.00452 * 13 11 9 17 17 C 1.46498 * 120.00404 * 4.57426 * 8 6 5 18 18 C 1.53000 * 117.50136 * 185.60383 * 17 8 6 19 19 C 1.53004 * 60.00163 * 252.50812 * 18 17 8 20 20 C 1.39732 * 119.01276 * 359.97438 * 5 4 3 21 21 N 1.31720 * 120.88640 * 0.28085 * 20 5 4 22 22 C 1.31773 * 122.04814 * 359.42775 * 21 20 5 23 23 C 1.50709 * 119.55094 * 180.31724 * 22 21 20 24 24 F 1.39903 * 109.46886 * 270.24961 * 23 22 21 25 25 F 1.39900 * 109.46844 * 30.24943 * 23 22 21 26 26 F 1.39895 * 109.46842 * 150.25132 * 23 22 21 27 27 H 1.07999 * 120.92675 * 0.04258 * 4 3 2 28 28 H 0.96995 * 120.00360 * 184.99060 * 12 11 9 29 29 H 1.09000 * 115.55070 * 331.30865 * 17 8 6 30 30 H 1.09005 * 117.50030 * 359.97438 * 18 17 8 31 31 H 1.09000 * 117.50515 * 145.02251 * 18 17 8 32 32 H 1.09003 * 117.50111 * 252.51321 * 19 18 17 33 33 H 1.09002 * 117.51905 * 107.47553 * 19 18 17 34 34 H 1.07999 * 119.56072 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2768 1.1955 0.1560 5 6 4.6736 1.1396 0.1480 6 6 5.4742 2.3708 0.3093 7 8 5.1340 3.3948 -0.2510 8 7 6.5814 2.3587 1.0775 9 6 7.2707 3.5196 1.3029 10 1 8.3488 3.5284 1.2402 11 6 6.5828 4.6877 1.6125 12 7 5.2969 4.6421 1.8772 13 14 7.4871 6.3217 1.6521 14 1 8.9179 6.1038 1.3193 15 1 6.8834 7.2457 0.6587 16 1 7.3790 6.9146 3.0094 17 6 7.0474 1.1032 1.6713 18 6 8.2312 1.1753 2.6379 19 6 8.4204 0.5841 1.2395 20 6 5.3014 -0.0983 -0.0136 21 7 4.5952 -1.2002 -0.1625 22 6 3.2775 -1.1926 -0.1555 23 6 2.5258 -2.4880 -0.3235 24 9 2.2923 -2.7185 -1.6835 25 9 3.2839 -3.5388 0.2042 26 9 1.3038 -2.4090 0.3527 27 1 2.7596 2.1356 0.2794 28 1 4.8021 5.4637 2.0218 29 1 6.2726 0.3649 1.8783 30 1 8.6636 2.1570 2.8318 31 1 8.2354 0.4846 3.4811 32 1 8.5490 -0.4956 1.1626 33 1 8.9768 1.1767 0.5132 34 1 6.3800 -0.1517 -0.0215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294103902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:45 Heat of formation + Delta-G solvation = -75.133272 kcal Electronic energy + Delta-G solvation = -27368.480561 eV Core-core repulsion = 22853.469456 eV Total energy + Delta-G solvation = -4515.011105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.40272 -48.95829 -48.80743 -42.09082 -40.19291 -37.97816 -37.86488 -34.96066 -34.13178 -33.88707 -32.67627 -28.79479 -26.98852 -26.03977 -24.44176 -23.20923 -22.97271 -21.94244 -20.53593 -19.84929 -19.78561 -19.75175 -18.37681 -17.95494 -17.77634 -16.63650 -16.55138 -16.03892 -15.91350 -15.66655 -15.56139 -15.35325 -15.28256 -15.06949 -15.02199 -14.96822 -14.80755 -14.47768 -14.42775 -14.35287 -14.12973 -13.69798 -13.31505 -12.93820 -12.85349 -12.76722 -12.18362 -12.02407 -11.71118 -11.46937 -11.31360 -11.20818 -10.78465 -10.63080 -10.12970 -9.07823 -8.20769 -6.06966 -1.14807 -0.50301 1.07480 1.23227 1.39863 1.45404 1.47926 1.56066 2.01965 2.16837 2.21917 2.31840 2.51107 2.53272 2.88012 3.09964 3.12106 3.28201 3.39943 3.44706 3.54726 3.72590 3.91057 4.11417 4.24519 4.33333 4.45359 4.71485 4.90068 4.98241 5.06895 5.31239 5.47999 5.54353 5.99667 6.12758 6.15103 6.93297 7.06070 7.54229 8.17404 8.82800 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.004060 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.669034 B = 6894.075156 C = 7948.986513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.261 3.739 3 C -0.025 4.025 4 C 0.018 3.982 5 C -0.121 4.121 6 C 0.503 3.497 7 O -0.567 6.567 8 N -0.420 5.420 9 C -0.337 4.337 10 H 0.093 0.907 11 C 0.013 3.987 12 N -0.865 5.865 13 Si 0.971 3.029 14 H -0.253 1.253 15 H -0.294 1.294 16 H -0.279 1.279 17 C 0.023 3.977 18 C -0.169 4.169 19 C -0.174 4.174 20 C 0.163 3.837 21 N -0.433 5.433 22 C 0.084 3.916 23 C 0.528 3.472 24 F -0.164 7.164 25 F -0.154 7.154 26 F -0.169 7.169 27 H 0.156 0.844 28 H 0.262 0.738 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -13.665 -0.984 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.055 4.055 3 C -0.032 4.032 4 C -0.011 4.011 5 C -0.127 4.127 6 C 0.291 3.709 7 O -0.447 6.447 8 N -0.138 5.138 9 C -0.465 4.465 10 H 0.110 0.890 11 C -0.194 4.194 12 N -0.500 5.500 13 Si 0.796 3.204 14 H -0.177 1.177 15 H -0.221 1.221 16 H -0.205 1.205 17 C -0.081 4.081 18 C -0.207 4.207 19 C -0.213 4.213 20 C 0.005 3.995 21 N -0.140 5.140 22 C -0.060 4.060 23 C 0.472 3.528 24 F -0.145 7.145 25 F -0.135 7.135 26 F -0.150 7.150 27 H 0.174 0.826 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.029 -13.857 -1.252 13.914 hybrid contribution -0.145 1.955 0.199 1.971 sum -0.116 -11.902 -1.053 11.949 Atomic orbital electron populations 1.81232 1.11805 1.07147 1.07483 1.25033 0.91958 0.94068 0.94471 1.16189 0.85526 0.94175 1.07262 1.21755 0.92826 0.97398 0.89072 1.21491 0.94516 0.96602 1.00098 1.17869 0.84088 0.86679 0.82276 1.90637 1.70546 1.34092 1.49473 1.42830 1.23817 1.06507 1.40669 1.19310 0.91951 0.86772 1.48464 0.88991 1.26106 0.96090 1.03030 0.94152 1.69897 1.09085 1.28908 1.42117 0.85214 0.79267 0.78686 0.77184 1.17658 1.22101 1.20463 1.22328 0.91983 0.89570 1.04263 1.23188 1.00588 1.02896 0.93990 1.23490 0.97877 1.02132 0.97781 1.23830 1.01978 0.84368 0.89360 1.67391 1.04346 1.31119 1.11170 1.21169 0.92041 0.91183 1.01616 1.17652 0.76869 0.83543 0.74688 1.93266 1.94551 1.95023 1.31705 1.93261 1.75340 1.58789 1.86078 1.93246 1.45486 1.96012 1.80297 0.82628 0.92884 0.85723 0.89532 0.86552 0.84983 0.89546 0.77651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -12.47 18.38 19.00 0.35 -12.12 16 2 C 0.26 7.44 12.56 88.33 1.11 8.55 16 3 C -0.03 -0.69 5.72 -21.30 -0.12 -0.81 16 4 C 0.02 0.56 9.54 23.03 0.22 0.78 16 5 C -0.12 -4.09 5.29 -20.03 -0.11 -4.20 16 6 C 0.50 22.54 6.47 86.76 0.56 23.10 16 7 O -0.57 -30.88 14.65 -3.99 -0.06 -30.93 16 8 N -0.42 -18.05 2.85 -616.48 -1.76 -19.81 16 9 C -0.34 -16.27 7.85 84.10 0.66 -15.61 16 10 H 0.09 4.21 7.32 -2.91 -0.02 4.19 16 11 C 0.01 0.66 4.66 84.96 0.40 1.05 16 12 N -0.86 -47.84 11.26 21.68 0.24 -47.60 16 13 Si 0.97 41.35 29.57 68.60 2.03 43.38 16 14 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 17 C 0.02 0.72 4.39 44.99 0.20 0.92 16 18 C -0.17 -4.67 9.80 30.60 0.30 -4.37 16 19 C -0.17 -4.17 9.55 30.60 0.29 -3.88 16 20 C 0.16 4.31 8.65 85.07 0.74 5.04 16 21 N -0.43 -10.93 9.93 -181.70 -1.80 -12.74 16 22 C 0.08 2.14 6.34 42.92 0.27 2.41 16 23 C 0.53 12.60 3.23 71.24 0.23 12.84 16 24 F -0.16 -3.91 17.30 44.97 0.78 -3.14 16 25 F -0.15 -3.54 17.04 44.97 0.77 -2.77 16 26 F -0.17 -4.22 14.48 44.97 0.65 -3.57 16 27 H 0.16 5.17 8.06 -2.91 -0.02 5.14 16 28 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.13 3.43 5.85 -2.39 -0.01 3.42 16 30 H 0.09 2.82 6.79 -2.38 -0.02 2.81 16 31 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.21 4.66 5.51 -2.91 -0.02 4.64 16 Total: -1.00 -62.64 317.11 7.14 -55.49 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.20 Total: 7.97 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 4.75 Total: 25.83 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -2.97 Total: -92.26 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.06 Total: -30.93 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 2.20 Total: -9.48 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -62.64 7.14 -55.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294103902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.640 kcal (2) G-P(sol) polarization free energy of solvation -62.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds