Wall clock time and date at job start Tue Mar 31 2020 14:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46843 * 2 1 4 4 C 1.52999 * 109.46794 * 240.00339 * 2 1 3 5 5 C 1.50706 * 109.47262 * 63.23163 * 4 2 1 6 6 H 1.07999 * 119.99619 * 356.61720 * 5 4 2 7 7 C 1.37876 * 120.00149 * 176.60832 * 5 4 2 8 8 N 1.31513 * 119.99825 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46967 * 90.00666 * 9 7 5 11 11 H 1.48501 * 109.46943 * 209.99970 * 9 7 5 12 12 H 1.48495 * 109.47254 * 330.00280 * 9 7 5 13 13 N 1.46895 * 109.47387 * 120.00486 * 2 1 3 14 14 C 1.46901 * 110.99959 * 174.76876 * 13 2 1 15 15 C 1.46904 * 110.99750 * 298.72117 * 13 2 1 16 16 C 1.53005 * 109.46869 * 170.00388 * 15 13 2 17 17 C 1.50700 * 109.46756 * 179.97438 * 16 15 13 18 18 C 1.38255 * 119.99560 * 269.71979 * 17 16 15 19 19 C 1.38225 * 120.02374 * 179.72885 * 18 17 16 20 20 C 1.38244 * 120.00192 * 0.55198 * 19 18 17 21 21 C 1.38304 * 119.99394 * 359.72053 * 20 19 18 22 22 Br 1.89097 * 120.00948 * 180.02562 * 21 20 19 23 23 C 1.38194 * 119.99471 * 90.00202 * 17 16 15 24 24 H 1.09005 * 109.47175 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46991 * 299.99094 * 1 2 3 26 26 H 1.09000 * 109.47448 * 59.99631 * 1 2 3 27 27 H 1.08994 * 109.47269 * 183.23321 * 4 2 1 28 28 H 1.08999 * 109.47460 * 303.23468 * 4 2 1 29 29 H 0.97001 * 119.99693 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47101 * 176.93637 * 14 13 2 31 31 H 1.09004 * 109.46611 * 296.92639 * 14 13 2 32 32 H 1.08989 * 109.47424 * 56.92818 * 14 13 2 33 33 H 1.08991 * 109.47564 * 49.99884 * 15 13 2 34 34 H 1.08996 * 109.46800 * 289.99668 * 15 13 2 35 35 H 1.08998 * 109.47142 * 59.99622 * 16 15 13 36 36 H 1.09001 * 109.46629 * 299.99685 * 16 15 13 37 37 H 1.08003 * 119.99128 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.00129 * 180.27713 * 19 18 17 39 39 H 1.08002 * 120.00097 * 179.70812 * 20 19 18 40 40 H 1.08002 * 120.00382 * 359.96980 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6040 0.0340 -2.4785 6 1 0.9758 0.9071 -2.3812 7 6 2.0073 -0.3895 -3.7270 8 7 2.7720 -1.4529 -3.8454 9 14 1.4675 0.5471 -5.2505 10 1 2.4637 1.6038 -5.5607 11 1 1.3668 -0.3902 -6.3979 12 1 0.1433 1.1720 -5.0040 13 7 2.0197 -0.6926 1.1993 14 6 3.4828 -0.8214 1.1723 15 6 1.5738 -0.0091 2.4208 16 6 1.8848 -0.8837 3.6371 17 6 1.4280 -0.1823 4.8902 18 6 2.2940 0.6556 5.5681 19 6 1.8738 1.3037 6.7144 20 6 0.5909 1.1053 7.1898 21 6 -0.2739 0.2628 6.5152 22 35 -2.0290 -0.0083 7.1647 23 6 0.1454 -0.3812 5.3648 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.1283 -0.7717 -1.2209 28 1 1.6300 -1.7307 -1.2789 29 1 3.0560 -1.7507 -4.7238 30 1 3.8235 -1.2887 2.0962 31 1 3.7776 -1.4380 0.3231 32 1 3.9329 0.1667 1.0774 33 1 0.4999 0.1689 2.3663 34 1 2.0956 0.9432 2.5153 35 1 2.9588 -1.0616 3.6916 36 1 1.3631 -1.8361 3.5425 37 1 3.2976 0.8076 5.1992 38 1 2.5490 1.9616 7.2411 39 1 0.2641 1.6080 8.0881 40 1 -0.5296 -1.0389 4.8374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298069893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:02 Heat of formation + Delta-G solvation = 17.089130 kcal Electronic energy + Delta-G solvation = -19153.383778 eV Core-core repulsion = 16206.741380 eV Total energy + Delta-G solvation = -2946.642399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.69706 -37.78468 -34.15970 -32.82374 -32.22902 -30.86842 -29.54713 -28.57019 -27.18258 -24.93186 -23.72332 -22.70765 -22.10507 -20.57840 -18.97724 -17.03277 -16.60978 -15.82853 -15.41624 -14.81633 -14.70226 -14.41017 -13.99547 -13.76814 -13.50013 -13.32247 -13.03176 -12.59638 -12.11258 -11.87781 -11.66154 -11.47734 -11.42979 -11.28684 -11.04657 -10.98405 -10.85476 -10.76427 -10.50503 -10.42456 -10.20217 -9.90731 -9.24688 -9.06263 -9.04462 -8.83723 -8.33060 -7.70325 -5.99477 -4.00861 0.86864 1.04809 1.39015 3.31733 3.36645 3.38383 3.41390 4.30162 4.47963 4.56456 4.72403 4.85504 5.03558 5.10046 5.20075 5.36529 5.38403 5.45834 5.62872 5.71657 5.82472 5.90421 5.94441 5.96194 6.07851 6.14894 6.19254 6.24024 6.34871 6.40117 6.54336 6.60611 6.71430 6.93097 7.11455 7.54463 7.61946 7.80783 7.88394 8.07985 8.44776 9.05365 9.62351 11.12019 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.002394 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.939410 B =11692.635889 C =12431.612488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.085 3.915 3 H 0.026 0.974 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.539 5.539 14 C 0.023 3.977 15 C 0.057 3.943 16 C -0.080 4.080 17 C -0.065 4.065 18 C -0.102 4.102 19 C -0.113 4.113 20 C -0.101 4.101 21 C -0.087 4.087 22 Br -0.057 7.057 23 C -0.087 4.087 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 3.562 25.738 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 H 0.044 0.956 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.263 5.263 14 C -0.125 4.125 15 C -0.072 4.072 16 C -0.118 4.118 17 C -0.067 4.067 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.167 4.167 22 Br 0.029 6.971 23 C -0.107 4.107 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.493 2.875 25.837 26.570 hybrid contribution 0.515 1.414 -1.023 1.820 sum -4.977 4.289 24.814 25.669 Atomic orbital electron populations 1.21786 0.95442 1.01608 1.00038 1.21842 0.94950 0.95239 0.90143 0.95594 1.19196 0.96471 0.95844 0.89172 1.21219 1.31031 1.12174 0.91144 0.92641 1.24987 0.95229 0.95107 0.99026 1.69966 1.35694 1.24100 1.23602 0.86626 0.79042 0.79666 0.82860 1.20781 1.21239 1.19880 1.62108 1.10743 1.51645 1.01805 1.22428 0.87924 1.00029 1.02118 1.22102 1.01169 0.94423 0.89474 1.20705 1.01961 0.99003 0.90122 1.20017 0.93140 0.96896 0.96636 1.21256 0.99976 0.95898 0.94949 1.21149 0.95546 0.99800 0.96673 1.21070 0.93539 0.97663 0.99833 1.21782 0.92199 1.03401 0.99294 1.96717 1.16578 1.96438 1.87392 1.21089 0.96170 0.99040 0.94391 0.92638 0.94976 0.91553 0.96022 0.95958 0.93044 0.92575 0.90132 0.96324 0.90475 0.95545 0.90589 0.89817 0.85402 0.85227 0.85284 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.81 37.16 0.33 -2.19 16 2 C 0.09 1.77 2.12 -67.72 -0.14 1.63 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.03 0.78 4.17 -27.88 -0.12 0.66 16 5 C -0.52 -14.35 8.46 -34.44 -0.29 -14.64 16 6 H 0.06 1.50 6.81 -52.49 -0.36 1.14 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.54 -9.54 4.63 -234.89 -1.09 -10.63 16 14 C 0.02 0.39 8.83 60.07 0.53 0.92 16 15 C 0.06 0.82 4.77 -3.82 -0.02 0.80 16 16 C -0.08 -0.94 5.28 -27.88 -0.15 -1.09 16 17 C -0.07 -0.71 5.13 -104.63 -0.54 -1.24 16 18 C -0.10 -0.98 9.70 -39.58 -0.38 -1.37 16 19 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 20 C -0.10 -0.92 9.79 -39.55 -0.39 -1.31 16 21 C -0.09 -0.90 6.22 -39.52 -0.25 -1.15 16 22 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.84 16 23 C -0.09 -0.94 9.44 -39.56 -0.37 -1.32 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.53 6.23 -51.93 -0.32 0.20 16 26 H 0.07 1.34 6.76 -51.93 -0.35 0.99 16 27 H 0.02 0.58 6.21 -51.93 -0.32 0.26 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.06 0.77 6.18 -51.93 -0.32 0.45 16 31 H 0.08 1.52 6.34 -51.93 -0.33 1.19 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 1.13 5.87 -51.93 -0.31 0.83 16 34 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 35 H 0.08 0.84 6.36 -51.93 -0.33 0.51 16 36 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 37 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -29.47 340.79 -10.81 -40.28 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.00 Total: -2.42 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.28 Total: -20.14 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.35 Total: -36.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.47 -10.81 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298069893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.369 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds