Wall clock time and date at job start Tue Mar 31 2020 14:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46843 * 2 1 4 4 C 1.52999 * 109.46794 * 240.00339 * 2 1 3 5 5 C 1.50706 * 109.47262 * 63.23163 * 4 2 1 6 6 H 1.07999 * 119.99619 * 356.61720 * 5 4 2 7 7 C 1.37876 * 120.00149 * 176.60832 * 5 4 2 8 8 N 1.31513 * 119.99825 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46967 * 90.00666 * 9 7 5 11 11 H 1.48501 * 109.46943 * 209.99970 * 9 7 5 12 12 H 1.48495 * 109.47254 * 330.00280 * 9 7 5 13 13 N 1.46895 * 109.47387 * 120.00486 * 2 1 3 14 14 C 1.46901 * 110.99959 * 174.76876 * 13 2 1 15 15 C 1.46904 * 110.99750 * 298.72117 * 13 2 1 16 16 C 1.53005 * 109.46869 * 170.00388 * 15 13 2 17 17 C 1.50700 * 109.46756 * 179.97438 * 16 15 13 18 18 C 1.38255 * 119.99560 * 269.71979 * 17 16 15 19 19 C 1.38225 * 120.02374 * 179.72885 * 18 17 16 20 20 C 1.38244 * 120.00192 * 0.55198 * 19 18 17 21 21 C 1.38304 * 119.99394 * 359.72053 * 20 19 18 22 22 Br 1.89097 * 120.00948 * 180.02562 * 21 20 19 23 23 C 1.38194 * 119.99471 * 90.00202 * 17 16 15 24 24 H 1.09005 * 109.47175 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46991 * 299.99094 * 1 2 3 26 26 H 1.09000 * 109.47448 * 59.99631 * 1 2 3 27 27 H 1.08994 * 109.47269 * 183.23321 * 4 2 1 28 28 H 1.08999 * 109.47460 * 303.23468 * 4 2 1 29 29 H 0.97001 * 119.99693 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47101 * 176.93637 * 14 13 2 31 31 H 1.09004 * 109.46611 * 296.92639 * 14 13 2 32 32 H 1.08989 * 109.47424 * 56.92818 * 14 13 2 33 33 H 1.08991 * 109.47564 * 49.99884 * 15 13 2 34 34 H 1.08996 * 109.46800 * 289.99668 * 15 13 2 35 35 H 1.08998 * 109.47142 * 59.99622 * 16 15 13 36 36 H 1.09001 * 109.46629 * 299.99685 * 16 15 13 37 37 H 1.08003 * 119.99128 * 0.02562 * 18 17 16 38 38 H 1.07994 * 120.00129 * 180.27713 * 19 18 17 39 39 H 1.08002 * 120.00097 * 179.70812 * 20 19 18 40 40 H 1.08002 * 120.00382 * 359.96980 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6040 0.0340 -2.4785 6 1 0.9758 0.9071 -2.3812 7 6 2.0073 -0.3895 -3.7270 8 7 2.7720 -1.4529 -3.8454 9 14 1.4675 0.5471 -5.2505 10 1 2.4637 1.6038 -5.5607 11 1 1.3668 -0.3902 -6.3979 12 1 0.1433 1.1720 -5.0040 13 7 2.0197 -0.6926 1.1993 14 6 3.4828 -0.8214 1.1723 15 6 1.5738 -0.0091 2.4208 16 6 1.8848 -0.8837 3.6371 17 6 1.4280 -0.1823 4.8902 18 6 2.2940 0.6556 5.5681 19 6 1.8738 1.3037 6.7144 20 6 0.5909 1.1053 7.1898 21 6 -0.2739 0.2628 6.5152 22 35 -2.0290 -0.0083 7.1647 23 6 0.1454 -0.3812 5.3648 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 3.1283 -0.7717 -1.2209 28 1 1.6300 -1.7307 -1.2789 29 1 3.0560 -1.7507 -4.7238 30 1 3.8235 -1.2887 2.0962 31 1 3.7776 -1.4380 0.3231 32 1 3.9329 0.1667 1.0774 33 1 0.4999 0.1689 2.3663 34 1 2.0956 0.9432 2.5153 35 1 2.9588 -1.0616 3.6916 36 1 1.3631 -1.8361 3.5425 37 1 3.2976 0.8076 5.1992 38 1 2.5490 1.9616 7.2411 39 1 0.2641 1.6080 8.0881 40 1 -0.5296 -1.0389 4.8374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298069893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:02 Heat of formation + Delta-G solvation = 1.852951 kcal Electronic energy + Delta-G solvation = -19154.044469 eV Core-core repulsion = 16206.741380 eV Total energy + Delta-G solvation = -2947.303089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49374 -39.19715 -35.62237 -34.36737 -33.08500 -32.37112 -30.35831 -29.78554 -28.82813 -26.28506 -25.51689 -23.53481 -23.28097 -21.56666 -20.63511 -18.67524 -17.73958 -16.80820 -16.61580 -16.44336 -16.05619 -15.57440 -15.46971 -14.95006 -14.40998 -14.30535 -14.16845 -13.90442 -13.78443 -13.35652 -13.11351 -13.07269 -12.75020 -12.64815 -12.47334 -12.20626 -12.11443 -12.06354 -11.81459 -11.71252 -11.50023 -11.25980 -11.14835 -10.97136 -10.51030 -9.83746 -9.61114 -9.14657 -8.17448 -6.26663 0.13510 0.31591 0.65133 1.40547 1.41473 1.52434 2.41329 2.62247 3.09694 3.16512 3.80664 3.88041 4.06571 4.18035 4.24761 4.27308 4.35746 4.37956 4.46858 4.57765 4.64517 4.68379 4.73169 4.79369 4.94361 4.98413 5.07074 5.12428 5.23229 5.24032 5.26838 5.38329 5.42142 5.51935 5.59674 5.72332 5.81536 5.88062 6.13820 6.36200 6.39698 6.89540 7.41432 8.94720 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.002394 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.939410 B =11692.635889 C =12431.612488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.094 3.906 3 H 0.018 0.982 4 C 0.040 3.960 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.547 5.547 14 C 0.027 3.973 15 C 0.061 3.939 16 C -0.069 4.069 17 C -0.077 4.077 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.102 4.102 21 C -0.100 4.100 22 Br -0.057 7.057 23 C -0.099 4.099 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.052 0.948 27 H -0.001 1.001 28 H -0.010 1.010 29 H 0.262 0.738 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.018 0.982 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 5.057 27.157 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.014 4.014 3 H 0.036 0.964 4 C 0.003 3.997 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.187 1.187 13 N -0.271 5.271 14 C -0.121 4.121 15 C -0.067 4.067 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.180 4.180 22 Br 0.029 6.971 23 C -0.119 4.119 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.017 0.983 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.164 0.836 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.721 4.376 27.276 28.211 hybrid contribution 0.606 0.937 -1.375 1.770 sum -5.115 5.313 25.901 26.931 Atomic orbital electron populations 1.21685 0.94104 1.01422 1.00874 1.21549 0.95958 0.94138 0.89706 0.96359 1.19010 0.94864 0.94483 0.91383 1.21624 1.30920 1.12405 0.92211 0.92103 1.25908 0.95220 0.96003 1.02526 1.70104 1.36943 1.25770 1.24480 0.85515 0.79077 0.78323 0.78553 1.19941 1.20919 1.18719 1.62041 1.11325 1.51811 1.01948 1.22389 0.87454 0.99713 1.02562 1.22132 1.00902 0.94868 0.88768 1.20550 1.02442 0.98270 0.89399 1.19924 0.93488 0.97821 0.96589 1.21495 1.00442 0.95366 0.95133 1.21479 0.95658 0.99496 0.96220 1.21369 0.93617 0.97054 1.00168 1.21918 0.92590 1.03966 0.99493 1.96711 1.16629 1.96493 1.87285 1.21139 0.96376 0.99481 0.94899 0.93305 0.91913 0.92884 0.98321 0.99187 0.92910 0.89160 0.93206 0.96358 0.90674 0.95207 0.89717 0.90310 0.83977 0.82478 0.83592 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 8.81 71.98 0.63 -4.05 16 2 C 0.09 3.96 2.12 44.92 0.10 4.05 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C 0.04 2.11 4.17 29.85 0.12 2.24 16 5 C -0.53 -30.12 8.46 25.60 0.22 -29.90 16 6 H 0.06 3.30 6.81 -2.91 -0.02 3.28 16 7 C 0.00 0.06 5.46 84.65 0.46 0.52 16 8 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 9 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 13 N -0.55 -19.21 4.63 -897.07 -4.15 -23.36 16 14 C 0.03 0.89 8.83 127.69 1.13 2.02 16 15 C 0.06 1.67 4.77 86.30 0.41 2.08 16 16 C -0.07 -1.50 5.28 29.85 0.16 -1.35 16 17 C -0.08 -1.51 5.13 -19.87 -0.10 -1.62 16 18 C -0.11 -1.75 9.70 22.27 0.22 -1.53 16 19 C -0.11 -1.55 10.05 22.27 0.22 -1.32 16 20 C -0.10 -1.61 9.79 22.29 0.22 -1.40 16 21 C -0.10 -1.91 6.22 22.31 0.14 -1.77 16 22 Br -0.06 -1.03 33.70 -20.37 -0.69 -1.71 16 23 C -0.10 -2.02 9.44 22.29 0.21 -1.81 16 24 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.06 1.98 6.23 -2.38 -0.01 1.96 16 26 H 0.05 2.13 6.76 -2.39 -0.02 2.11 16 27 H 0.00 -0.08 6.21 -2.39 -0.01 -0.10 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.09 2.34 6.18 -2.39 -0.01 2.33 16 31 H 0.05 1.95 6.34 -2.38 -0.02 1.94 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.07 2.08 5.87 -2.39 -0.01 2.07 16 34 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 35 H 0.08 1.68 6.36 -2.39 -0.02 1.66 16 36 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 37 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -64.16 340.79 2.62 -61.54 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.02 Total: 7.63 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 4.13 Total: -33.84 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -3.87 Total: -79.98 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 35 Polarization: -1.03 SS G_CDS: -0.69 Total: -1.71 kcal Total: -64.16 2.62 -61.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298069893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.390 kcal (2) G-P(sol) polarization free energy of solvation -64.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds