Wall clock time and date at job start Tue Mar 31 2020 13:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48499 * 109.47262 * 240.00570 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00161 * 3 2 1 7 7 C 1.38978 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 N 1.36975 * 119.99887 * 0.27510 * 7 2 1 10 10 C 1.34775 * 119.99735 * 179.72167 * 9 7 2 11 11 O 1.21633 * 120.00176 * 0.02562 * 10 9 7 12 12 C 1.47344 * 119.99820 * 180.02562 * 10 9 7 13 13 C 1.41365 * 126.41552 * 0.02562 * 12 10 9 14 14 N 1.30466 * 108.07182 * 180.02562 * 13 12 10 15 15 N 1.39939 * 108.93279 * 0.02562 * 14 13 12 16 16 C 1.40149 * 125.76947 * 179.97438 * 15 14 13 17 17 C 1.38843 * 120.06377 * 179.70008 * 16 15 14 18 18 C 1.38118 * 119.92847 * 179.77239 * 17 16 15 19 19 C 1.38281 * 120.06930 * 0.52433 * 18 17 16 20 20 C 1.50696 * 119.93328 * 179.72448 * 19 18 17 21 21 F 1.39899 * 109.47286 * 269.97724 * 20 19 18 22 22 F 1.39902 * 109.47360 * 29.98438 * 20 19 18 23 23 F 1.39910 * 109.46807 * 149.97820 * 20 19 18 24 24 C 1.38282 * 120.13150 * 359.70395 * 19 18 17 25 25 C 1.38112 * 120.07143 * 0.04396 * 24 19 18 26 26 C 1.34564 * 108.46031 * 359.72740 * 15 14 13 27 27 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00333 * 359.72592 * 9 7 2 29 29 H 1.08003 * 125.96807 * 359.97438 * 13 12 10 30 30 H 1.07998 * 120.04229 * 359.97438 * 17 16 15 31 31 H 1.08010 * 119.96782 * 180.25669 * 18 17 16 32 32 H 1.08004 * 119.96696 * 180.02562 * 24 19 18 33 33 H 1.07991 * 120.03603 * 179.97438 * 25 24 19 34 34 H 1.07997 * 126.31955 * 180.26222 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2036 -0.0005 8 1 3.0891 -1.2035 -0.0010 9 7 1.3242 -2.3898 -0.0068 10 6 1.9981 -3.5569 -0.0130 11 8 3.2144 -3.5569 -0.0125 12 6 1.2614 -4.8330 -0.0202 13 6 -0.1434 -4.9909 -0.0221 14 7 -0.4069 -6.2687 -0.0285 15 7 0.7977 -6.9808 -0.0304 16 6 0.9243 -8.3765 -0.0363 17 6 2.1838 -8.9607 -0.0439 18 6 2.3053 -10.3365 -0.0450 19 6 1.1742 -11.1320 -0.0495 20 6 1.3104 -12.6327 -0.0570 21 9 1.3526 -13.0906 -1.3783 22 9 2.4900 -12.9973 0.6009 23 9 0.2147 -13.2036 0.5996 24 6 -0.0816 -10.5530 -0.0468 25 6 -0.2096 -9.1778 -0.0404 26 6 1.8140 -6.0988 -0.0310 27 1 -0.4850 0.8401 0.0004 28 1 0.3542 -2.3899 -0.0068 29 1 -0.8714 -4.1932 -0.0180 30 1 3.0677 -8.3401 -0.0457 31 1 3.2849 -10.7916 -0.0467 32 1 -0.9632 -11.1768 -0.0499 33 1 -1.1906 -8.7263 -0.0387 34 1 2.8674 -6.3368 -0.0364 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351964109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:42 Heat of formation + Delta-G solvation = -97.940086 kcal Electronic energy + Delta-G solvation = -25457.096574 eV Core-core repulsion = 20941.096491 eV Total energy + Delta-G solvation = -4516.000083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.17919 -48.69396 -48.64496 -42.78478 -40.45952 -39.61390 -36.00867 -35.14082 -33.27910 -32.58299 -31.47876 -31.11222 -27.58654 -26.58616 -24.71961 -24.00959 -23.03319 -21.80489 -20.85947 -20.06062 -19.65667 -19.49534 -19.32871 -19.16364 -17.28010 -16.69678 -16.64068 -16.49725 -16.06003 -15.79445 -15.56756 -15.52572 -15.29206 -15.20057 -15.10494 -14.92637 -14.80099 -14.76595 -14.58864 -14.41793 -13.96786 -13.84841 -13.48613 -12.92118 -12.78979 -12.60498 -12.42204 -12.13969 -12.05058 -11.67893 -11.51942 -10.51195 -10.32279 -10.30181 -10.04526 -9.40893 -8.48488 -5.93913 -0.69271 0.05938 0.68443 1.06783 1.08988 1.45107 1.49789 1.55945 1.61786 2.31129 2.32025 2.52418 2.67627 2.96360 3.03496 3.32367 3.39220 3.46243 3.54275 3.73148 3.77246 3.97240 4.08570 4.22211 4.33390 4.39905 4.71390 4.75729 4.83001 4.94064 5.02446 5.30656 5.35046 5.41828 5.87573 5.98688 6.32084 6.57202 7.09021 7.52388 8.07045 8.68708 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.042631 B = 0.002100 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.647426 B =13331.454154 C =13813.586158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.085 0.915 9 N -0.556 5.556 10 C 0.509 3.491 11 O -0.639 6.639 12 C -0.267 4.267 13 C 0.093 3.907 14 N -0.301 5.301 15 N -0.322 5.322 16 C 0.173 3.827 17 C -0.142 4.142 18 C -0.035 4.035 19 C -0.202 4.202 20 C 0.517 3.483 21 F -0.179 7.179 22 F -0.177 7.177 23 F -0.178 7.178 24 C -0.040 4.040 25 C -0.127 4.127 26 C 0.116 3.884 27 H 0.280 0.720 28 H 0.398 0.602 29 H 0.211 0.789 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.149 0.851 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 -24.146 -0.126 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.103 0.897 9 N -0.190 5.190 10 C 0.298 3.702 11 O -0.528 6.528 12 C -0.281 4.281 13 C -0.096 4.096 14 N -0.118 5.118 15 N -0.095 5.095 16 C 0.081 3.919 17 C -0.162 4.162 18 C -0.054 4.054 19 C -0.204 4.204 20 C 0.463 3.537 21 F -0.161 7.161 22 F -0.158 7.158 23 F -0.159 7.159 24 C -0.058 4.058 25 C -0.146 4.146 26 C -0.030 4.030 27 H 0.090 0.910 28 H 0.232 0.768 29 H 0.228 0.772 30 H 0.178 0.822 31 H 0.188 0.812 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.707 -24.927 -0.128 24.986 hybrid contribution 0.402 1.474 -0.002 1.528 sum -1.304 -23.454 -0.130 23.490 Atomic orbital electron populations 1.69656 1.06888 1.29684 1.49186 1.26099 0.96578 1.02510 0.95928 0.84949 0.77772 0.76321 0.79089 1.19548 1.19517 1.19539 1.19706 0.93008 0.83650 1.49961 0.89737 1.41696 1.09439 1.04397 1.63436 1.17333 0.86568 0.83259 0.83069 1.90558 1.15010 1.87994 1.59283 1.20486 0.94018 0.93722 1.19835 1.24559 0.95233 0.94449 0.95319 1.77122 1.03820 1.05044 1.25862 1.45735 1.04578 1.04532 1.54645 1.18143 0.96406 0.77946 0.99440 1.21104 0.95670 0.95699 1.03731 1.20999 0.99252 0.91824 0.93291 1.20119 0.96672 0.91065 1.12570 1.18131 0.73665 0.88271 0.73628 1.93236 1.96103 1.90648 1.36091 1.93201 1.48305 1.93111 1.81197 1.93200 1.54572 1.86871 1.81277 1.21007 0.97193 0.93969 0.93650 1.20955 0.98401 0.92926 1.02364 1.23180 0.95898 0.87611 0.96296 0.91027 0.76754 0.77239 0.82182 0.81250 0.81740 0.83348 0.77244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.01 13.05 21.67 0.28 -47.73 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.69 29.55 68.60 2.03 43.72 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.33 -18.60 9.68 84.07 0.81 -17.78 16 8 H 0.08 4.97 7.15 -2.91 -0.02 4.95 16 9 N -0.56 -28.41 5.27 -310.03 -1.64 -30.05 16 10 C 0.51 24.77 7.76 86.64 0.67 25.44 16 11 O -0.64 -35.23 16.47 -4.14 -0.07 -35.29 16 12 C -0.27 -10.11 6.13 -20.14 -0.12 -10.23 16 13 C 0.09 3.05 11.50 85.67 0.99 4.03 16 14 N -0.30 -9.23 11.77 -56.21 -0.66 -9.89 16 15 N -0.32 -8.96 3.77 -186.15 -0.70 -9.66 16 16 C 0.17 3.75 6.68 38.10 0.25 4.00 16 17 C -0.14 -2.32 9.45 22.39 0.21 -2.11 16 18 C -0.04 -0.47 9.39 22.25 0.21 -0.26 16 19 C -0.20 -2.92 5.46 -19.84 -0.11 -3.03 16 20 C 0.52 7.50 3.36 71.23 0.24 7.74 16 21 F -0.18 -2.87 17.30 44.97 0.78 -2.09 16 22 F -0.18 -2.63 16.46 44.97 0.74 -1.89 16 23 F -0.18 -2.69 16.46 44.97 0.74 -1.95 16 24 C -0.04 -0.57 9.39 22.25 0.21 -0.37 16 25 C -0.13 -2.36 9.65 22.39 0.22 -2.15 16 26 C 0.12 3.58 10.61 84.25 0.89 4.47 16 27 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 28 H 0.40 19.08 6.85 -92.71 -0.63 18.45 16 29 H 0.21 6.07 7.50 -2.91 -0.02 6.05 16 30 H 0.16 2.12 6.71 -2.91 -0.02 2.10 16 31 H 0.17 1.44 7.60 -2.91 -0.02 1.42 16 32 H 0.17 1.64 7.60 -2.91 -0.02 1.62 16 33 H 0.15 2.82 7.68 -2.92 -0.02 2.80 16 34 H 0.21 5.34 7.01 -2.91 -0.02 5.31 16 Total: -1.00 -67.38 322.40 7.01 -60.37 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.57 Total: 24.77 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 4.94 Total: 9.68 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -2.72 Total: -97.32 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.07 Total: -35.29 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 2.26 Total: -5.93 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -67.38 7.01 -60.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351964109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.567 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds