Wall clock time and date at job start Tue Mar 31 2020 13:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48497 * 109.46812 * 269.99728 * 3 2 1 5 5 H 1.48494 * 109.47275 * 30.00138 * 3 2 1 6 6 H 1.48502 * 109.47175 * 149.99831 * 3 2 1 7 7 C 1.37877 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 175.28671 * 7 2 1 9 9 C 1.50704 * 119.99718 * 355.55546 * 7 2 1 10 10 C 1.52999 * 115.55107 * 274.99337 * 9 7 2 11 11 N 1.46496 * 109.46950 * 294.32765 * 10 9 7 12 12 S 1.65609 * 119.99755 * 159.12866 * 11 10 9 13 13 O 1.42098 * 106.40293 * 178.54215 * 12 11 10 14 14 O 1.42103 * 106.40067 * 311.46029 * 12 11 10 15 15 C 1.76201 * 107.21704 * 65.00301 * 12 11 10 16 16 C 1.38395 * 119.92170 * 269.72359 * 15 12 11 17 17 C 1.38347 * 120.29694 * 179.76567 * 16 15 12 18 18 C 1.37963 * 120.15298 * 0.51192 * 17 16 15 19 19 C 1.39606 * 119.84545 * 359.74385 * 18 17 16 20 20 C 1.47730 * 120.14572 * 180.02562 * 19 18 17 21 21 O 1.21478 * 119.99451 * 179.97438 * 20 19 18 22 22 O 1.34701 * 120.00346 * 359.97438 * 20 19 18 23 23 C 1.37918 * 119.92566 * 90.00122 * 15 12 11 24 24 C 1.53001 * 117.49532 * 129.32093 * 9 7 2 25 25 C 1.53005 * 117.49556 * 60.66339 * 9 7 2 26 26 H 0.97001 * 120.00505 * 5.00298 * 1 2 3 27 27 H 1.08996 * 109.47214 * 54.33422 * 10 9 7 28 28 H 1.09000 * 109.46724 * 174.33354 * 10 9 7 29 29 H 0.97000 * 120.00503 * 339.13613 * 11 10 9 30 30 H 1.08003 * 119.85045 * 0.02562 * 16 15 12 31 31 H 1.08006 * 119.91900 * 180.26126 * 17 16 15 32 32 H 1.08004 * 120.07284 * 179.76719 * 18 17 16 33 33 H 0.96703 * 117.00391 * 180.02562 * 22 20 19 34 34 H 1.07997 * 120.07534 * 359.95117 * 23 15 12 35 35 H 1.09000 * 117.49793 * 0.02562 * 24 9 7 36 36 H 1.09002 * 117.49496 * 145.02147 * 24 9 7 37 37 H 1.09001 * 117.49741 * 214.97952 * 25 9 7 38 38 H 1.08998 * 117.49782 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0763 9 6 1.2544 -2.4971 0.1023 10 6 0.9144 -2.9537 1.5224 11 7 2.1508 -3.2588 2.2464 12 16 2.1587 -3.2726 3.9025 13 8 3.4767 -3.6308 4.2945 14 8 1.5242 -2.0704 4.3167 15 6 1.1104 -4.5917 4.4180 16 6 -0.2362 -4.3585 4.6362 17 6 -1.0672 -5.3896 5.0364 18 6 -0.5558 -6.6561 5.2309 19 6 0.8027 -6.8971 5.0177 20 6 1.3573 -8.2509 5.2234 21 8 2.5397 -8.4576 5.0367 22 8 0.5519 -9.2559 5.6181 23 6 1.6349 -5.8530 4.6087 24 6 1.5761 -3.5798 -0.9300 25 6 0.2484 -2.8214 -1.0040 26 1 -0.4851 0.8368 -0.0733 27 1 0.3764 -2.1597 2.0403 28 1 0.2901 -3.8461 1.4774 29 1 2.9649 -3.4526 1.7560 30 1 -0.6409 -3.3680 4.4893 31 1 -2.1180 -5.2017 5.2009 32 1 -1.2050 -7.4593 5.5470 33 1 0.9604 -10.1239 5.7399 34 1 2.6866 -6.0327 4.4416 35 1 2.3305 -3.3496 -1.6823 36 1 1.5450 -4.6173 -0.5973 37 1 -0.6555 -3.3603 -0.7201 38 1 0.1289 -2.0919 -1.8051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362331396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:32 Heat of formation + Delta-G solvation = -137.162284 kcal Electronic energy + Delta-G solvation = -25236.437413 eV Core-core repulsion = 21363.744469 eV Total energy + Delta-G solvation = -3872.692944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53865 -39.79048 -38.79881 -38.30307 -37.17035 -36.97738 -34.89968 -33.87008 -32.80691 -32.39345 -27.83114 -26.63880 -25.98184 -24.47719 -22.83659 -22.50922 -21.18488 -20.58770 -19.48570 -18.88977 -18.66896 -17.99426 -17.19826 -17.11260 -17.03836 -16.76345 -16.57373 -16.14780 -15.66357 -15.29847 -15.08304 -14.73849 -14.50443 -14.21967 -13.95172 -13.74151 -13.44596 -13.24670 -13.17372 -13.00918 -12.85860 -12.83615 -12.80738 -12.66542 -12.36316 -12.00639 -11.93725 -11.77710 -11.32738 -10.98124 -10.66435 -10.35640 -10.32552 -10.25929 -9.89634 -8.06258 -6.16191 -0.72185 -0.56106 -0.22170 1.30045 1.40015 1.45213 1.51766 1.88267 2.04777 2.42515 2.45017 2.73959 3.22423 3.29288 3.57374 3.65323 3.76242 3.87292 4.01626 4.22131 4.25895 4.50011 4.58339 4.62667 4.66324 4.71084 4.77278 4.87033 4.97932 5.08845 5.09011 5.34473 5.36748 5.47927 5.56486 5.69276 5.79609 5.84764 6.21234 6.45581 6.87698 6.88840 7.51561 9.00397 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.003658 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.837689 B = 7652.369086 C = 7945.909796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.051 0.949 9 C 0.003 3.997 10 C 0.169 3.831 11 N -1.094 6.094 12 S 2.702 3.298 13 O -0.990 6.990 14 O -0.986 6.986 15 C -0.686 4.686 16 C 0.004 3.996 17 C -0.139 4.139 18 C 0.006 3.994 19 C -0.163 4.163 20 C 0.537 3.463 21 O -0.547 6.547 22 O -0.496 6.496 23 C 0.030 3.970 24 C -0.185 4.185 25 C -0.148 4.148 26 H 0.259 0.741 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.421 0.579 30 H 0.152 0.848 31 H 0.182 0.818 32 H 0.182 0.818 33 H 0.437 0.563 34 H 0.142 0.858 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -17.405 10.447 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.001 3.999 10 C 0.043 3.957 11 N -0.855 5.855 12 S 2.794 3.206 13 O -0.980 6.980 14 O -0.976 6.976 15 C -0.775 4.775 16 C -0.015 4.015 17 C -0.157 4.157 18 C -0.012 4.012 19 C -0.165 4.165 20 C 0.382 3.618 21 O -0.439 6.439 22 O -0.310 6.310 23 C 0.010 3.990 24 C -0.222 4.222 25 C -0.186 4.186 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.257 0.743 30 H 0.170 0.830 31 H 0.200 0.800 32 H 0.200 0.800 33 H 0.300 0.700 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.447 -16.345 11.064 20.476 hybrid contribution 0.883 0.199 -0.498 1.033 sum -4.565 -16.146 10.566 19.829 Atomic orbital electron populations 1.70026 1.06526 1.27122 1.50072 1.25516 0.95578 1.01302 0.94719 0.85954 0.79067 0.81007 0.78095 1.20034 1.21195 1.19931 1.20662 0.92630 0.90279 1.50630 0.93121 1.19053 1.00107 0.93458 0.87268 1.20750 0.83531 0.97808 0.93640 1.55000 1.19743 1.86788 1.23957 1.01273 0.72884 0.73872 0.72547 1.93529 1.37455 1.84994 1.82035 1.93558 1.77909 1.44397 1.81705 1.30702 1.11172 1.14993 1.20652 1.21608 0.90561 1.01520 0.87818 1.21773 1.02366 0.91556 1.00007 1.22177 0.92716 0.98431 0.87900 1.19235 0.96112 0.90632 1.10570 1.20670 0.83346 0.85610 0.72132 1.90926 1.18804 1.84544 1.49601 1.84466 1.44285 1.22953 1.79293 1.20977 1.00291 0.89830 0.87911 1.23023 0.99083 0.96359 1.03755 1.22414 0.92172 1.01509 1.02552 0.93143 0.92566 0.91630 0.74277 0.83037 0.80042 0.80044 0.70018 0.83989 0.90739 0.88558 0.89993 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.59 12.65 21.45 0.27 -49.32 16 2 C 0.03 1.60 5.43 84.66 0.46 2.06 16 3 Si 0.93 43.66 29.54 68.60 2.03 45.68 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.50 -26.33 8.75 25.60 0.22 -26.11 16 8 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 9 C 0.00 0.14 1.49 -52.92 -0.08 0.06 16 10 C 0.17 6.62 6.09 86.38 0.53 7.14 16 11 N -1.09 -39.02 5.88 -187.50 -1.10 -40.12 16 12 S 2.70 93.87 5.74 -56.49 -0.32 93.55 16 13 O -0.99 -37.95 17.27 -128.00 -2.21 -40.16 16 14 O -0.99 -40.68 16.67 -128.00 -2.13 -42.82 16 15 C -0.69 -18.71 5.94 22.23 0.13 -18.58 16 16 C 0.00 0.09 9.52 22.33 0.21 0.31 16 17 C -0.14 -2.06 10.03 22.23 0.22 -1.84 16 18 C 0.01 0.08 9.62 22.53 0.22 0.30 16 19 C -0.16 -3.39 5.87 -20.10 -0.12 -3.50 16 20 C 0.54 10.70 8.27 70.33 0.58 11.29 16 21 O -0.55 -14.99 17.13 19.91 0.34 -14.65 16 22 O -0.50 -5.36 12.68 -56.11 -0.71 -6.07 16 23 C 0.03 0.77 9.07 22.53 0.20 0.97 16 24 C -0.19 -7.05 9.96 30.62 0.30 -6.75 16 25 C -0.15 -6.29 9.15 30.62 0.28 -6.01 16 26 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 27 H 0.06 2.50 7.64 -2.39 -0.02 2.48 16 28 H 0.07 2.13 8.09 -2.39 -0.02 2.11 16 29 H 0.42 14.27 8.70 -96.74 -0.84 13.43 16 30 H 0.15 3.37 7.60 -2.91 -0.02 3.35 16 31 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.18 1.27 7.61 -2.91 -0.02 1.25 16 33 H 0.44 0.91 9.11 -74.06 -0.67 0.23 16 34 H 0.14 3.97 7.20 -2.91 -0.02 3.95 16 35 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -74.37 350.78 -1.07 -75.44 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.39 Total: 19.13 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 3.17 Total: -40.66 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -0.83 Total: -89.44 kcal Atomic # 8 Polarization: -98.99 SS G_CDS: -4.71 Total: -103.70 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 93.87 SS G_CDS: -0.32 Total: 93.55 kcal Total: -74.37 -1.07 -75.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362331396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.722 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds