Wall clock time and date at job start Tue Mar 31 2020 14:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.47237 * 2 1 4 4 C 1.46907 * 110.99805 * 198.90415 * 3 2 1 5 5 C 1.50697 * 109.47167 * 66.04256 * 4 3 2 6 6 C 1.38259 * 119.99651 * 269.72633 * 5 4 3 7 7 C 1.38219 * 120.02028 * 179.72962 * 6 5 4 8 8 C 1.38239 * 120.00906 * 0.54677 * 7 6 5 9 9 C 1.38304 * 119.99122 * 359.72908 * 8 7 6 10 10 Br 1.89099 * 120.01011 * 180.02562 * 9 8 7 11 11 C 1.38201 * 119.99454 * 90.00212 * 5 4 3 12 12 C 1.46901 * 111.00398 * 74.94750 * 3 2 1 13 13 H 1.09003 * 109.46402 * 310.87032 * 12 3 2 14 14 C 1.52994 * 109.47039 * 70.87279 * 12 3 2 15 15 C 1.52994 * 109.47147 * 190.87276 * 12 3 2 16 16 C 1.50704 * 109.47400 * 63.61646 * 15 12 3 17 17 H 1.08004 * 119.99565 * 5.01410 * 16 15 12 18 18 C 1.37870 * 120.00035 * 185.01136 * 16 15 12 19 19 N 1.31506 * 120.00444 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99847 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46936 * 90.00115 * 20 18 16 22 22 H 1.48496 * 109.46862 * 209.99991 * 20 18 16 23 23 H 1.48496 * 109.47006 * 329.99929 * 20 18 16 24 24 H 1.09002 * 109.47077 * 54.66377 * 1 2 3 25 25 H 1.09003 * 109.47489 * 174.66352 * 1 2 3 26 26 H 1.09000 * 109.47023 * 294.66340 * 1 2 3 27 27 H 1.08998 * 109.46651 * 120.00118 * 2 1 3 28 28 H 1.09001 * 109.46679 * 239.99627 * 2 1 3 29 29 H 1.09001 * 109.46582 * 186.04381 * 4 3 2 30 30 H 1.09004 * 109.46546 * 306.04424 * 4 3 2 31 31 H 1.08002 * 119.99084 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.99738 * 180.27200 * 7 6 5 33 33 H 1.08007 * 120.00535 * 179.74723 * 8 7 6 34 34 H 1.08003 * 120.00520 * 359.97438 * 11 5 4 35 35 H 1.08994 * 109.47153 * 180.02562 * 14 12 3 36 36 H 1.09010 * 109.47261 * 300.00121 * 14 12 3 37 37 H 1.08998 * 109.47698 * 59.99819 * 14 12 3 38 38 H 1.08997 * 109.47028 * 183.61530 * 15 12 3 39 39 H 1.09002 * 109.47324 * 303.61920 * 15 12 3 40 40 H 0.96999 * 120.00765 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4185 1.4487 -0.4444 5 6 3.5050 1.0377 -1.8916 6 6 3.7081 -0.2892 -2.2224 7 6 3.7820 -0.6676 -3.5497 8 6 3.6642 0.2825 -4.5470 9 6 3.4667 1.6108 -4.2166 10 35 3.3047 2.9107 -5.5803 11 6 3.3871 1.9882 -2.8880 12 6 1.8594 2.0001 1.3243 13 1 0.8439 1.8313 1.6827 14 6 2.8560 1.3736 2.3016 15 6 2.1212 3.5041 1.2231 16 6 1.0846 4.1355 0.3299 17 1 0.2693 3.5409 -0.0552 18 6 1.1770 5.4720 0.0044 19 7 2.1694 6.1961 0.4737 20 14 -0.1084 6.2548 -1.1023 21 1 -1.2175 6.7891 -0.2718 22 1 0.5108 7.3627 -1.8732 23 1 -0.6402 5.2349 -2.0416 24 1 -0.3633 0.5944 -0.8384 25 1 -0.3634 -1.0232 -0.0956 26 1 -0.3633 0.4288 0.9339 27 1 1.8932 -0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 3.7888 2.4678 -0.3332 30 1 4.0232 0.7741 0.1617 31 1 3.8051 -1.0311 -1.4434 32 1 3.9362 -1.7049 -3.8078 33 1 3.7260 -0.0126 -5.5842 34 1 3.2325 3.0254 -2.6294 35 1 2.7368 1.8297 3.2843 36 1 2.6695 0.3020 2.3737 37 1 3.8714 1.5422 1.9432 38 1 2.0655 3.9502 2.2161 39 1 3.1132 3.6728 0.8041 40 1 2.2342 7.1365 0.2451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411196943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:44 Heat of formation + Delta-G solvation = 23.485235 kcal Electronic energy + Delta-G solvation = -20327.522321 eV Core-core repulsion = 17381.157278 eV Total energy + Delta-G solvation = -2946.365043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.54255 -37.73564 -33.26454 -32.39118 -31.70611 -31.40396 -29.21525 -28.50925 -27.31685 -25.05925 -23.40619 -22.42476 -21.45887 -21.10189 -18.52272 -16.67906 -16.16859 -15.63828 -15.30634 -15.07308 -14.38164 -14.26774 -13.80928 -13.43061 -13.20431 -12.95015 -12.61157 -12.50287 -12.17779 -11.76582 -11.71368 -11.34365 -11.19632 -11.09276 -10.89807 -10.81396 -10.64981 -10.54751 -10.46794 -10.30690 -10.09377 -9.84983 -9.20079 -8.97086 -8.67611 -8.50958 -8.23726 -7.48034 -5.87348 -3.84659 1.23492 1.45989 1.80083 3.40618 3.47598 3.53124 3.72296 4.58153 4.65085 4.87442 4.96967 5.16038 5.39325 5.42561 5.45964 5.50320 5.64847 5.66806 5.75079 5.84990 5.91377 5.98553 6.02804 6.08369 6.11535 6.27027 6.37845 6.39018 6.44246 6.54023 6.61442 6.65848 6.78193 6.97752 7.01643 7.52170 7.66559 7.89005 8.01611 8.13581 8.58891 9.20781 9.77150 11.24468 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.006116 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.947455 B = 4576.914045 C = 6573.991613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 N -0.502 5.502 4 C 0.090 3.910 5 C -0.056 4.056 6 C -0.105 4.105 7 C -0.121 4.121 8 C -0.101 4.101 9 C -0.089 4.089 10 Br -0.060 7.060 11 C -0.060 4.060 12 C 0.086 3.914 13 H 0.073 0.927 14 C -0.185 4.185 15 C 0.029 3.971 16 C -0.486 4.486 17 H 0.059 0.941 18 C 0.053 3.947 19 N -0.903 5.903 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.273 1.273 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.056 0.944 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.022 0.978 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 -13.871 -8.444 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 N -0.225 5.225 4 C -0.037 4.037 5 C -0.057 4.057 6 C -0.124 4.124 7 C -0.140 4.140 8 C -0.121 4.121 9 C -0.169 4.169 10 Br 0.025 6.975 11 C -0.080 4.080 12 C -0.022 4.022 13 H 0.091 0.909 14 C -0.244 4.244 15 C -0.008 4.008 16 C -0.525 4.525 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.544 5.544 20 Si 0.711 3.289 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.198 1.198 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.040 0.960 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.132 -12.927 -9.291 16.447 hybrid contribution -0.196 -0.203 0.227 0.362 sum 3.936 -13.130 -9.064 16.433 Atomic orbital electron populations 1.21710 0.95384 1.00130 1.02744 1.22223 0.96217 0.90682 0.99825 1.62157 1.17307 1.15291 1.27792 1.21108 0.90636 1.02571 0.89421 1.19945 0.97153 0.92571 0.96067 1.21184 0.99254 0.95693 0.96275 1.21011 1.01407 0.99046 0.92557 1.20992 1.00100 0.91166 0.99817 1.21781 1.08440 0.93408 0.93242 1.96685 1.97144 1.54640 1.49018 1.21224 0.95514 1.01396 0.89913 1.21959 0.97547 0.97902 0.84796 0.90924 1.22533 1.01022 0.99644 1.01230 1.19210 0.97680 0.87002 0.96872 1.21118 1.09655 0.93604 1.28110 0.92249 1.24951 0.95625 0.97555 0.96484 1.69947 1.31189 1.07308 1.45989 0.86727 0.81974 0.79096 0.81075 1.21079 1.21520 1.19764 0.91801 0.93552 0.92812 0.95511 0.91374 0.88299 0.94650 0.85991 0.85678 0.85633 0.84026 0.92485 0.94073 0.92888 0.96700 0.95999 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.93 37.16 0.37 -1.74 16 2 C 0.04 0.58 5.45 -3.83 -0.02 0.56 16 3 N -0.50 -9.09 4.05 -228.09 -0.92 -10.02 16 4 C 0.09 1.51 4.04 -4.97 -0.02 1.49 16 5 C -0.06 -0.87 4.94 -104.63 -0.52 -1.39 16 6 C -0.11 -1.34 7.86 -39.58 -0.31 -1.66 16 7 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 8 C -0.10 -1.27 9.79 -39.56 -0.39 -1.66 16 9 C -0.09 -1.34 6.22 -39.52 -0.25 -1.58 16 10 Br -0.06 -0.87 33.70 -68.01 -2.29 -3.16 16 11 C -0.06 -1.01 9.44 -39.56 -0.37 -1.38 16 12 C 0.09 1.67 2.18 -67.72 -0.15 1.52 16 13 H 0.07 1.46 6.65 -51.93 -0.35 1.11 16 14 C -0.19 -3.04 8.46 37.15 0.31 -2.73 16 15 C 0.03 0.72 4.38 -27.88 -0.12 0.60 16 16 C -0.49 -13.27 8.80 -34.44 -0.30 -13.57 16 17 H 0.06 1.64 7.75 -52.48 -0.41 1.23 16 18 C 0.05 1.51 5.46 -17.83 -0.10 1.41 16 19 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 20 Si 0.88 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.82 6.92 -51.93 -0.36 0.47 16 27 H 0.03 0.38 6.24 -51.93 -0.32 0.06 16 28 H 0.07 0.96 5.01 -51.93 -0.26 0.70 16 29 H 0.10 1.92 6.01 -51.93 -0.31 1.61 16 30 H 0.04 0.54 6.77 -51.93 -0.35 0.18 16 31 H 0.12 1.33 7.67 -52.49 -0.40 0.93 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.14 2.69 8.06 -52.48 -0.42 2.26 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.60 6.50 -51.92 -0.34 0.26 16 37 H 0.05 0.85 6.55 -51.93 -0.34 0.51 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.57 6.25 -51.93 -0.32 0.24 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -28.98 336.27 -10.55 -39.53 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.86 Total: -0.49 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.26 Total: -21.92 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.19 Total: -36.06 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -2.29 Total: -3.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.98 -10.55 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411196943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.019 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds