Wall clock time and date at job start Tue Mar 31 2020 14:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46895 * 109.47237 * 2 1 4 4 C 1.46907 * 110.99805 * 198.90415 * 3 2 1 5 5 C 1.50697 * 109.47167 * 66.04256 * 4 3 2 6 6 C 1.38259 * 119.99651 * 269.72633 * 5 4 3 7 7 C 1.38219 * 120.02028 * 179.72962 * 6 5 4 8 8 C 1.38239 * 120.00906 * 0.54677 * 7 6 5 9 9 C 1.38304 * 119.99122 * 359.72908 * 8 7 6 10 10 Br 1.89099 * 120.01011 * 180.02562 * 9 8 7 11 11 C 1.38201 * 119.99454 * 90.00212 * 5 4 3 12 12 C 1.46901 * 111.00398 * 74.94750 * 3 2 1 13 13 H 1.09003 * 109.46402 * 310.87032 * 12 3 2 14 14 C 1.52994 * 109.47039 * 70.87279 * 12 3 2 15 15 C 1.52994 * 109.47147 * 190.87276 * 12 3 2 16 16 C 1.50704 * 109.47400 * 63.61646 * 15 12 3 17 17 H 1.08004 * 119.99565 * 5.01410 * 16 15 12 18 18 C 1.37870 * 120.00035 * 185.01136 * 16 15 12 19 19 N 1.31506 * 120.00444 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99847 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46936 * 90.00115 * 20 18 16 22 22 H 1.48496 * 109.46862 * 209.99991 * 20 18 16 23 23 H 1.48496 * 109.47006 * 329.99929 * 20 18 16 24 24 H 1.09002 * 109.47077 * 54.66377 * 1 2 3 25 25 H 1.09003 * 109.47489 * 174.66352 * 1 2 3 26 26 H 1.09000 * 109.47023 * 294.66340 * 1 2 3 27 27 H 1.08998 * 109.46651 * 120.00118 * 2 1 3 28 28 H 1.09001 * 109.46679 * 239.99627 * 2 1 3 29 29 H 1.09001 * 109.46582 * 186.04381 * 4 3 2 30 30 H 1.09004 * 109.46546 * 306.04424 * 4 3 2 31 31 H 1.08002 * 119.99084 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.99738 * 180.27200 * 7 6 5 33 33 H 1.08007 * 120.00535 * 179.74723 * 8 7 6 34 34 H 1.08003 * 120.00520 * 359.97438 * 11 5 4 35 35 H 1.08994 * 109.47153 * 180.02562 * 14 12 3 36 36 H 1.09010 * 109.47261 * 300.00121 * 14 12 3 37 37 H 1.08998 * 109.47698 * 59.99819 * 14 12 3 38 38 H 1.08997 * 109.47028 * 183.61530 * 15 12 3 39 39 H 1.09002 * 109.47324 * 303.61920 * 15 12 3 40 40 H 0.96999 * 120.00765 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4185 1.4487 -0.4444 5 6 3.5050 1.0377 -1.8916 6 6 3.7081 -0.2892 -2.2224 7 6 3.7820 -0.6676 -3.5497 8 6 3.6642 0.2825 -4.5470 9 6 3.4667 1.6108 -4.2166 10 35 3.3047 2.9107 -5.5803 11 6 3.3871 1.9882 -2.8880 12 6 1.8594 2.0001 1.3243 13 1 0.8439 1.8313 1.6827 14 6 2.8560 1.3736 2.3016 15 6 2.1212 3.5041 1.2231 16 6 1.0846 4.1355 0.3299 17 1 0.2693 3.5409 -0.0552 18 6 1.1770 5.4720 0.0044 19 7 2.1694 6.1961 0.4737 20 14 -0.1084 6.2548 -1.1023 21 1 -1.2175 6.7891 -0.2718 22 1 0.5108 7.3627 -1.8732 23 1 -0.6402 5.2349 -2.0416 24 1 -0.3633 0.5944 -0.8384 25 1 -0.3634 -1.0232 -0.0956 26 1 -0.3633 0.4288 0.9339 27 1 1.8932 -0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 3.7888 2.4678 -0.3332 30 1 4.0232 0.7741 0.1617 31 1 3.8051 -1.0311 -1.4434 32 1 3.9362 -1.7049 -3.8078 33 1 3.7260 -0.0126 -5.5842 34 1 3.2325 3.0254 -2.6294 35 1 2.7368 1.8297 3.2843 36 1 2.6695 0.3020 2.3737 37 1 3.8714 1.5422 1.9432 38 1 2.0655 3.9502 2.2161 39 1 3.1132 3.6728 0.8041 40 1 2.2342 7.1365 0.2451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411196943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:43 Heat of formation + Delta-G solvation = 8.369857 kcal Electronic energy + Delta-G solvation = -20328.177773 eV Core-core repulsion = 17381.157278 eV Total energy + Delta-G solvation = -2947.020495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.71978 -39.06365 -35.16085 -33.71921 -32.94910 -32.79020 -30.39693 -29.81921 -29.09087 -26.32784 -25.23169 -23.63030 -22.82041 -22.30836 -19.97861 -18.36043 -17.74012 -16.93155 -16.72771 -16.41490 -16.07776 -15.51873 -15.14423 -14.71800 -14.44878 -14.17656 -14.05500 -13.85994 -13.66581 -13.47192 -13.20263 -12.92373 -12.60295 -12.46853 -12.38793 -12.31371 -12.25153 -11.95823 -11.89749 -11.72725 -11.33297 -11.22254 -11.07293 -10.98207 -10.46169 -9.79531 -9.59988 -8.83090 -8.08824 -6.11395 0.16527 0.37550 0.68412 1.37669 1.39996 1.50230 2.46461 2.63005 3.22548 3.37715 3.77053 3.95469 4.13687 4.15905 4.27437 4.35091 4.38330 4.45377 4.50447 4.56737 4.62266 4.77702 4.80933 4.86176 4.97913 5.03501 5.13750 5.16256 5.24036 5.28602 5.30494 5.39286 5.48921 5.53545 5.63924 5.74239 5.91790 5.92864 6.35096 6.49387 6.59630 7.01737 7.53635 9.02986 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.006116 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.947455 B = 4576.914045 C = 6573.991613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.041 3.959 3 N -0.526 5.526 4 C 0.098 3.902 5 C -0.070 4.070 6 C -0.098 4.098 7 C -0.106 4.106 8 C -0.097 4.097 9 C -0.102 4.102 10 Br -0.066 7.066 11 C -0.089 4.089 12 C 0.095 3.905 13 H 0.067 0.933 14 C -0.175 4.175 15 C 0.035 3.965 16 C -0.488 4.488 17 H 0.053 0.947 18 C 0.001 3.999 19 N -0.937 5.937 20 Si 0.941 3.059 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.270 1.270 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.052 0.948 38 H -0.011 1.011 39 H -0.001 1.001 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 -17.415 -9.298 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 N -0.250 5.250 4 C -0.029 4.029 5 C -0.071 4.071 6 C -0.116 4.116 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.181 4.181 10 Br 0.020 6.980 11 C -0.110 4.110 12 C -0.013 4.013 13 H 0.085 0.915 14 C -0.234 4.234 15 C -0.002 4.002 16 C -0.527 4.527 17 H 0.072 0.928 18 C -0.195 4.195 19 N -0.580 5.580 20 Si 0.767 3.233 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.195 1.195 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.169 0.831 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.007 0.993 39 H 0.018 0.982 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.950 -16.482 -10.143 19.752 hybrid contribution -0.124 0.855 0.467 0.982 sum 3.826 -15.627 -9.677 18.774 Atomic orbital electron populations 1.21703 0.95383 1.01512 1.01126 1.22291 0.96148 0.88805 1.01375 1.62015 1.18418 1.17694 1.26861 1.20933 0.90183 1.00738 0.91049 1.19874 0.98673 0.93911 0.94680 1.21448 0.97818 0.94487 0.97878 1.21487 0.98739 1.00738 0.91437 1.21362 0.98644 0.90000 1.01632 1.21882 1.09294 0.94605 0.92299 1.96661 1.97209 1.55490 1.48681 1.20983 0.98454 0.99942 0.91599 1.21613 0.98124 0.94735 0.86815 0.91531 1.22394 0.99883 1.01080 1.00032 1.19068 0.95754 0.90904 0.94458 1.21400 1.09766 0.93687 1.27801 0.92837 1.25685 0.97464 0.98344 0.97968 1.70064 1.32912 1.07489 1.47524 0.85805 0.79868 0.78138 0.79456 1.20083 1.21427 1.19513 0.94213 0.90422 0.93839 0.93630 0.89814 0.92464 0.92444 0.83147 0.81398 0.83143 0.88126 0.92557 0.91145 0.92933 0.99283 0.98236 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.93 71.98 0.71 -3.15 16 2 C 0.04 1.13 5.45 86.30 0.47 1.60 16 3 N -0.53 -18.90 4.05 -875.54 -3.55 -22.45 16 4 C 0.10 3.32 4.04 85.55 0.35 3.67 16 5 C -0.07 -2.13 4.94 -19.87 -0.10 -2.23 16 6 C -0.10 -2.14 7.86 22.27 0.18 -1.97 16 7 C -0.11 -1.95 10.05 22.27 0.22 -1.72 16 8 C -0.10 -2.14 9.79 22.29 0.22 -1.92 16 9 C -0.10 -2.99 6.22 22.31 0.14 -2.85 16 10 Br -0.07 -1.90 33.70 -20.37 -0.69 -2.59 16 11 C -0.09 -3.09 9.44 22.29 0.21 -2.88 16 12 C 0.10 3.74 2.18 44.91 0.10 3.84 16 13 H 0.07 2.68 6.65 -2.39 -0.02 2.66 16 14 C -0.18 -5.53 8.46 71.98 0.61 -4.92 16 15 C 0.04 1.81 4.38 29.85 0.13 1.95 16 16 C -0.49 -27.71 8.80 25.60 0.23 -27.49 16 17 H 0.05 3.04 7.75 -2.91 -0.02 3.02 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.94 -57.90 13.29 21.44 0.28 -57.62 16 20 Si 0.94 46.61 29.54 68.60 2.03 48.64 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 23 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.04 1.27 6.92 -2.39 -0.02 1.25 16 27 H 0.05 1.10 6.24 -2.39 -0.01 1.09 16 28 H 0.08 2.05 5.01 -2.39 -0.01 2.04 16 29 H 0.06 2.39 6.01 -2.39 -0.01 2.37 16 30 H 0.06 1.64 6.77 -2.38 -0.02 1.63 16 31 H 0.15 2.46 7.67 -2.91 -0.02 2.44 16 32 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.82 6.50 -2.38 -0.02 1.80 16 37 H 0.05 1.65 6.55 -2.39 -0.02 1.64 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 39 H 0.00 -0.03 6.25 -2.39 -0.01 -0.05 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -66.18 336.27 3.02 -63.15 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.02 Total: 8.40 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 3.92 Total: -37.53 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.26 Total: -80.07 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Atomic # 35 Polarization: -1.90 SS G_CDS: -0.69 Total: -2.59 kcal Total: -66.18 3.02 -63.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411196943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.524 kcal (2) G-P(sol) polarization free energy of solvation -66.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds