Wall clock time and date at job start Tue Mar 31 2020 14:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 C 1.53001 * 109.47238 * 120.00167 * 2 1 3 5 5 C 1.52997 * 109.47207 * 202.71583 * 4 2 1 6 6 N 1.46893 * 109.47254 * 82.71647 * 4 2 1 7 7 C 1.46898 * 111.00279 * 64.17904 * 6 4 2 8 8 C 1.50697 * 109.47392 * 179.53540 * 7 6 4 9 9 H 1.08003 * 119.99769 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00335 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00249 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99863 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47348 * 90.00109 * 12 10 8 14 14 H 1.48499 * 109.47412 * 210.00259 * 12 10 8 15 15 H 1.48504 * 109.47071 * 330.00288 * 12 10 8 16 16 C 1.50701 * 109.47042 * 322.71422 * 4 2 1 17 17 C 1.38246 * 119.99096 * 325.70453 * 16 4 2 18 18 C 1.38212 * 120.00802 * 179.76822 * 17 16 4 19 19 C 1.38328 * 119.99193 * 0.50459 * 18 17 16 20 20 Br 1.89104 * 120.00876 * 179.72371 * 19 18 17 21 21 C 1.38325 * 119.97821 * 359.75058 * 19 18 17 22 22 C 1.38219 * 119.99203 * 359.97438 * 21 19 18 23 23 H 1.08999 * 109.47199 * 74.75788 * 1 2 3 24 24 H 1.08998 * 109.47289 * 194.75718 * 1 2 3 25 25 H 1.09005 * 109.47374 * 314.75449 * 1 2 3 26 26 H 1.08998 * 109.46995 * 239.99991 * 2 1 3 27 27 H 1.08998 * 109.47149 * 202.19104 * 3 2 1 28 28 H 1.08996 * 109.47256 * 322.19736 * 3 2 1 29 29 H 1.09010 * 109.46812 * 82.19295 * 3 2 1 30 30 H 1.08997 * 109.47216 * 300.00282 * 5 4 2 31 31 H 1.09004 * 109.47266 * 60.00153 * 5 4 2 32 32 H 1.08997 * 109.47191 * 179.97438 * 5 4 2 33 33 H 1.00899 * 111.00442 * 188.14073 * 6 4 2 34 34 H 1.08995 * 109.47236 * 299.53806 * 7 6 4 35 35 H 1.09009 * 109.46622 * 59.53789 * 7 6 4 36 36 H 0.97000 * 119.99755 * 179.97438 * 11 10 8 37 37 H 1.07999 * 119.99019 * 0.02562 * 17 16 4 38 38 H 1.08007 * 120.00497 * 180.23497 * 18 17 16 39 39 H 1.07997 * 120.00410 * 179.97438 * 21 19 18 40 40 H 1.07995 * 119.99392 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.4645 -0.2575 1.5600 6 7 2.0377 -2.1711 1.0128 7 6 2.9798 -2.5319 -0.0550 8 6 2.9582 -4.0246 -0.2608 9 1 2.3091 -4.6433 0.3412 10 6 3.7669 -4.6004 -1.2174 11 7 3.7484 -5.9032 -1.3967 12 14 4.8890 -3.5302 -2.2590 13 1 6.2056 -3.3917 -1.5862 14 1 5.0776 -4.1598 -3.5907 15 1 4.2760 -2.1883 -2.4283 16 6 1.1417 -0.4011 2.4161 17 6 0.5568 0.8476 2.5157 18 6 -0.2709 1.1400 3.5832 19 6 -0.5059 0.1866 4.5575 20 35 -1.6322 0.5888 6.0223 21 6 0.0837 -1.0610 4.4601 22 6 0.9068 -1.3545 3.3893 23 1 -0.3633 0.2702 -0.9915 24 1 -0.3634 -0.9937 0.2618 25 1 -0.3634 0.7236 0.7298 26 1 1.8933 -0.5138 -0.8900 27 1 3.0582 1.4679 -0.3881 28 1 1.3956 2.0557 -0.6299 29 1 2.0294 1.8316 1.0182 30 1 4.1142 -0.4890 0.7161 31 1 3.4662 0.8183 1.7355 32 1 3.8276 -0.7711 2.4502 33 1 2.2426 -2.6763 1.8618 34 1 2.6892 -2.0334 -0.9796 35 1 3.9852 -2.2185 0.2264 36 1 4.3172 -6.3082 -2.0700 37 1 0.7436 1.5932 1.7571 38 1 -0.7308 2.1143 3.6590 39 1 -0.0991 -1.8055 5.2207 40 1 1.3675 -2.3283 3.3135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411621534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:38 Heat of formation + Delta-G solvation = 23.677552 kcal Electronic energy + Delta-G solvation = -20424.399632 eV Core-core repulsion = 17478.042929 eV Total energy + Delta-G solvation = -2946.356703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55664 -38.59866 -35.65523 -34.25915 -33.09313 -31.80734 -31.09290 -29.76208 -28.76843 -27.23460 -24.85488 -23.83910 -23.29928 -22.41946 -19.67689 -19.16701 -17.67356 -16.86097 -16.50856 -16.14001 -15.82721 -15.36301 -15.21965 -15.06512 -14.88230 -14.56433 -14.14970 -13.98476 -13.66528 -13.27504 -13.07255 -13.02524 -12.81596 -12.64122 -12.46112 -12.25540 -12.00387 -11.80545 -11.75242 -11.64097 -11.51268 -11.38195 -11.23104 -10.83096 -10.74490 -9.86117 -9.50727 -9.03263 -8.29535 -6.32690 0.15344 0.39613 0.68076 1.33179 1.35479 1.46155 2.33488 2.66036 3.04963 3.42602 3.63990 3.79801 3.95310 4.00834 4.13780 4.33550 4.44010 4.47627 4.56186 4.58650 4.70783 4.75233 4.82037 4.86501 4.92662 4.98282 5.03981 5.08841 5.18221 5.19359 5.28221 5.33461 5.37809 5.52098 5.55856 5.61939 5.66175 5.87335 6.01204 6.57252 6.68791 6.78862 7.31728 8.87419 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.003323 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.334732 B = 8423.218153 C = 9115.984475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.154 4.154 4 C 0.148 3.852 5 C -0.177 4.177 6 N -0.675 5.675 7 C 0.177 3.823 8 C -0.525 4.525 9 H 0.035 0.965 10 C 0.009 3.991 11 N -0.949 5.949 12 Si 0.946 3.054 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.247 1.247 16 C -0.044 4.044 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.104 4.104 20 Br -0.053 7.053 21 C -0.095 4.095 22 C -0.118 4.118 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.333 0.667 34 H 0.029 0.971 35 H -0.008 1.008 36 H 0.266 0.734 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 21.062 12.640 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.211 4.211 4 C 0.057 3.943 5 C -0.236 4.236 6 N -0.306 5.306 7 C 0.048 3.952 8 C -0.563 4.563 9 H 0.053 0.947 10 C -0.189 4.189 11 N -0.590 5.590 12 Si 0.770 3.230 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.171 1.171 16 C -0.045 4.045 17 C -0.135 4.135 18 C -0.113 4.113 19 C -0.183 4.183 20 Br 0.032 6.968 21 C -0.115 4.115 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.047 0.953 35 H 0.009 0.991 36 H 0.075 0.925 37 H 0.182 0.818 38 H 0.170 0.830 39 H 0.155 0.845 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.141 21.075 12.672 26.236 hybrid contribution 1.643 -0.856 -0.470 1.911 sum -7.499 20.219 12.202 24.777 Atomic orbital electron populations 1.22121 0.94483 1.01757 1.01837 1.21206 0.96760 0.96516 0.96259 1.22209 1.01477 0.94324 1.03098 1.19980 0.92944 0.88514 0.92837 1.22618 0.96622 1.03111 1.01216 1.60643 1.54702 1.04359 1.10935 1.19789 0.89795 0.93789 0.91796 1.21371 1.22906 0.92507 1.19513 0.94697 1.25841 0.98558 0.96126 0.98352 1.70058 1.41420 1.11897 1.35593 0.85727 0.79350 0.79885 0.78079 1.19150 1.20905 1.17076 1.19879 0.96273 0.94190 0.94129 1.21651 0.96679 0.96883 0.98251 1.21316 0.98038 0.99323 0.92589 1.21878 1.02301 0.97617 0.96543 1.96678 1.64264 1.94650 1.41204 1.21164 0.96323 0.95578 0.98409 1.21089 0.99017 0.99682 0.93946 0.92775 0.94399 0.90079 0.92619 0.92611 0.90806 0.90133 0.92851 0.89462 0.93275 0.84690 0.95333 0.99064 0.92483 0.81809 0.82957 0.84473 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 8.06 71.98 0.58 -3.24 16 2 C -0.09 -2.47 2.51 -10.79 -0.03 -2.49 16 3 C -0.15 -3.05 7.22 71.98 0.52 -2.53 16 4 C 0.15 4.44 0.43 2.78 0.00 4.44 16 5 C -0.18 -4.90 7.24 71.98 0.52 -4.38 16 6 N -0.68 -26.42 5.86 -477.89 -2.80 -29.22 16 7 C 0.18 8.16 3.76 85.56 0.32 8.48 16 8 C -0.52 -30.18 9.87 25.60 0.25 -29.93 16 9 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 10 C 0.01 0.49 5.47 84.65 0.46 0.96 16 11 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 12 Si 0.95 43.72 27.47 68.60 1.88 45.61 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 16 C -0.04 -1.15 3.95 -19.86 -0.08 -1.23 16 17 C -0.12 -2.42 6.46 22.27 0.14 -2.27 16 18 C -0.09 -1.81 9.79 22.29 0.22 -1.59 16 19 C -0.10 -2.26 6.22 22.31 0.14 -2.12 16 20 Br -0.05 -1.01 33.70 -20.37 -0.69 -1.70 16 21 C -0.09 -2.27 9.79 22.29 0.22 -2.05 16 22 C -0.12 -3.20 9.27 22.27 0.21 -3.00 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.04 1.21 7.95 -2.39 -0.02 1.20 16 25 H 0.08 1.74 4.72 -2.38 -0.01 1.73 16 26 H 0.06 1.90 5.79 -2.39 -0.01 1.89 16 27 H 0.05 1.13 7.86 -2.39 -0.02 1.11 16 28 H 0.07 1.21 7.95 -2.39 -0.02 1.19 16 29 H 0.08 1.32 4.31 -2.38 -0.01 1.31 16 30 H 0.05 1.64 6.33 -2.39 -0.02 1.62 16 31 H 0.09 1.90 6.21 -2.38 -0.01 1.89 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.33 13.04 6.52 -89.69 -0.58 12.46 16 34 H 0.03 1.35 5.14 -2.39 -0.01 1.34 16 35 H -0.01 -0.37 5.63 -2.38 -0.01 -0.38 16 36 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.16 2.75 3.70 -2.91 -0.01 2.74 16 38 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 40 H 0.12 3.56 6.10 -2.91 -0.02 3.54 16 Total: -1.00 -64.89 318.77 2.60 -62.29 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.42 Total: 23.16 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 3.48 Total: -40.96 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -2.50 Total: -88.40 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.69 Total: -1.70 kcal Total: -64.89 2.60 -62.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411621534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.972 kcal (2) G-P(sol) polarization free energy of solvation -64.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds