Wall clock time and date at job start Tue Mar 31 2020 14:49:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46504 * 109.46798 * 2 1
4 4 C 1.36939 * 119.99892 * 275.97162 * 3 2 1
5 5 H 1.08003 * 119.99996 * 146.59914 * 4 3 2
6 6 C 1.38812 * 119.99766 * 326.59067 * 4 3 2
7 7 N 1.31621 * 120.00527 * 336.11829 * 6 4 3
8 8 Si 1.86803 * 119.99690 * 156.11734 * 6 4 3
9 9 H 1.48498 * 109.47042 * 60.00322 * 8 6 4
10 10 H 1.48502 * 109.47221 * 180.02562 * 8 6 4
11 11 H 1.48497 * 109.47112 * 300.00122 * 8 6 4
12 12 S 1.65594 * 120.00162 * 95.97234 * 3 2 1
13 13 O 1.42095 * 106.40560 * 156.45691 * 12 3 2
14 14 O 1.42099 * 106.40177 * 23.53643 * 12 3 2
15 15 C 1.76201 * 107.21774 * 269.99769 * 12 3 2
16 16 C 1.38635 * 119.90373 * 90.00182 * 15 12 3
17 17 C 1.38025 * 120.70443 * 180.38317 * 16 15 12
18 18 C 1.38848 * 120.08578 * 359.45782 * 17 16 15
19 19 C 1.40410 * 119.17506 * 0.30537 * 18 17 16
20 20 C 1.37832 * 119.90670 * 269.97515 * 15 12 3
21 21 C 1.47353 * 119.01375 * 180.18416 * 19 18 17
22 22 O 1.21297 * 121.73583 * 168.03190 * 21 19 18
23 23 C 1.51840 * 116.51918 * 348.01583 * 21 19 18
24 24 C 1.53571 * 107.16697 * 40.00354 * 23 21 19
25 25 O 1.35332 * 120.00757 * 179.81650 * 18 17 16
26 26 H 1.08995 * 109.47140 * 299.99953 * 1 2 3
27 27 H 1.08998 * 109.46729 * 60.00206 * 1 2 3
28 28 H 1.08996 * 109.46843 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.47140 * 240.00046 * 2 1 3
30 30 H 1.09002 * 109.47130 * 119.99510 * 2 1 3
31 31 H 0.96990 * 120.00273 * 180.02562 * 7 6 4
32 32 H 1.07994 * 119.64667 * 0.10071 * 16 15 12
33 33 H 1.08001 * 119.95758 * 179.74249 * 17 16 15
34 34 H 1.07996 * 120.20568 * 0.02562 * 20 15 12
35 35 H 1.09003 * 109.91840 * 159.42235 * 23 21 19
36 36 H 1.09005 * 109.91219 * 280.58828 * 23 21 19
37 37 H 1.08994 * 109.49182 * 61.24225 * 24 23 21
38 38 H 1.09002 * 109.49434 * 181.32072 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1302 2.0679 -1.1795
5 1 1.9551 3.1334 -1.2028
6 6 2.4687 1.3945 -2.3452
7 7 3.1247 0.2552 -2.2803
8 14 1.9933 2.1052 -4.0060
9 1 2.6185 3.4422 -4.1696
10 1 2.4667 1.2015 -5.0851
11 1 0.5162 2.2367 -4.0836
12 16 2.4350 2.1122 1.4263
13 8 3.3459 3.1509 1.0938
14 8 2.7470 1.0668 2.3368
15 6 0.9880 2.9004 2.0506
16 6 0.1325 2.2075 2.8932
17 6 -1.0096 2.8061 3.3855
18 6 -1.3078 4.1196 3.0480
19 6 -0.4383 4.8223 2.1985
20 6 0.7102 4.2042 1.7003
21 6 -0.7560 6.2173 1.8460
22 8 0.0525 6.9371 1.2988
23 6 -2.1484 6.7065 2.2030
24 6 -2.4916 6.1288 3.5839
25 8 -2.4299 4.7038 3.5286
26 1 -0.3633 0.5138 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 1.8934 -0.5138 -0.8899
30 1 1.8934 -0.5138 0.8900
31 1 3.3615 -0.2151 -3.0948
32 1 0.3597 1.1869 3.1636
33 1 -1.6698 2.2537 4.0377
34 1 1.3765 4.7442 1.0440
35 1 -2.1605 7.7957 2.2427
36 1 -2.8671 6.3530 1.4635
37 1 -1.7761 6.4956 4.3197
38 1 -3.4973 6.4386 3.8681
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000414445816.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:49:54
Heat of formation + Delta-G solvation = -108.779824 kcal
Electronic energy + Delta-G solvation = -26206.834796 eV
Core-core repulsion = 22335.372608 eV
Total energy + Delta-G solvation = -3871.462188 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.086 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.12688 -38.62240 -37.72926 -36.19177 -35.87464 -34.71282 -32.66449 -31.68271
-30.98676 -30.53255 -29.23438 -25.12426 -24.61237 -24.08551 -22.55081 -21.64881
-20.09768 -18.47430 -18.34324 -17.61622 -17.05810 -16.71501 -16.26041 -15.87378
-15.33438 -14.91222 -14.74175 -14.70909 -14.51958 -14.05698 -13.90158 -13.57297
-13.40510 -12.90804 -12.81252 -12.40855 -12.24639 -12.21093 -11.93286 -11.45597
-11.26618 -11.20008 -11.02723 -10.96781 -10.90358 -10.82965 -10.44026 -10.38313
-10.16866 -9.84898 -9.77758 -9.15459 -9.08959 -8.67487 -7.72925 -6.26237
-3.94586 0.48857 1.04695 1.48500 2.13896 2.73811 3.23547 3.28016
3.31345 3.47404 3.67504 4.14589 4.20518 4.43027 4.46467 4.51683
4.62218 4.73257 4.94377 5.03126 5.04454 5.08134 5.23263 5.34805
5.47622 5.66271 5.80848 5.89093 6.00083 6.06143 6.21371 6.29233
6.35430 6.50623 6.57262 6.92251 7.02204 7.26853 7.29096 7.41877
7.79233 8.42654 9.00090 9.37693 10.75459
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.014560 B = 0.004992 C = 0.004413
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1922.632495 B = 5607.504974 C = 6343.671640
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.108 3.892
3 N -0.840 5.840
4 C -0.288 4.288
5 H 0.091 0.909
6 C 0.041 3.959
7 N -0.856 5.856
8 Si 0.913 3.087
9 H -0.271 1.271
10 H -0.284 1.284
11 H -0.275 1.275
12 S 2.635 3.365
13 O -0.968 6.968
14 O -0.995 6.995
15 C -0.695 4.695
16 C 0.041 3.959
17 C -0.183 4.183
18 C 0.213 3.787
19 C -0.274 4.274
20 C 0.077 3.923
21 C 0.400 3.600
22 O -0.439 6.439
23 C -0.203 4.203
24 C 0.069 3.931
25 O -0.309 6.309
26 H 0.036 0.964
27 H 0.059 0.941
28 H 0.048 0.952
29 H 0.117 0.883
30 H 0.060 0.940
31 H 0.268 0.732
32 H 0.150 0.850
33 H 0.143 0.857
34 H 0.153 0.847
35 H 0.112 0.888
36 H 0.115 0.885
37 H 0.072 0.928
38 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.612 6.055 9.443 17.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.019 4.019
3 N -0.672 5.672
4 C -0.423 4.423
5 H 0.109 0.891
6 C -0.166 4.166
7 N -0.496 5.496
8 Si 0.740 3.260
9 H -0.196 1.196
10 H -0.209 1.209
11 H -0.200 1.200
12 S 2.730 3.270
13 O -0.958 6.958
14 O -0.984 6.984
15 C -0.778 4.778
16 C 0.022 3.978
17 C -0.202 4.202
18 C 0.166 3.834
19 C -0.277 4.277
20 C 0.058 3.942
21 C 0.277 3.723
22 O -0.313 6.313
23 C -0.241 4.241
24 C -0.006 4.006
25 O -0.221 6.221
26 H 0.055 0.945
27 H 0.078 0.922
28 H 0.067 0.933
29 H 0.134 0.866
30 H 0.078 0.922
31 H 0.078 0.922
32 H 0.167 0.833
33 H 0.161 0.839
34 H 0.170 0.830
35 H 0.130 0.870
36 H 0.133 0.867
37 H 0.090 0.910
38 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -12.481 6.282 9.670 16.993
hybrid contribution -0.982 0.687 -0.865 1.478
sum -13.463 6.968 8.805 17.531
Atomic orbital electron populations
1.22205 0.98731 1.00047 1.01265 1.21406 0.91613 0.83953 1.04890
1.52602 1.76530 1.20622 1.17422 1.19038 1.45438 0.93967 0.83872
0.89148 1.25280 0.94999 0.96823 0.99526 1.69955 1.33741 1.16826
1.29057 0.86218 0.79116 0.79141 0.81564 1.19637 1.20906 1.20010
1.04725 0.73700 0.73947 0.74608 1.93456 1.59297 1.59476 1.83574
1.93414 1.82632 1.55821 1.66562 1.31609 1.25853 1.06173 1.14137
1.20986 0.89650 0.99008 0.88122 1.20636 0.99869 0.93610 1.06122
1.19290 0.83240 0.92277 0.88613 1.20587 1.00952 0.97934 1.08210
1.20975 0.91468 0.91720 0.90010 1.22364 0.88586 0.86267 0.75125
1.90593 1.50736 1.57959 1.32026 1.23063 0.97202 1.04172 0.99659
1.23051 1.04476 0.77200 0.95862 1.85755 1.34902 1.22497 1.78980
0.94528 0.92213 0.93315 0.86567 0.92156 0.92167 0.83281 0.83877
0.82953 0.86996 0.86715 0.90973 0.85974
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 35.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.97 10.20 37.16 0.38 -2.59 16
2 C 0.11 2.38 6.01 -4.04 -0.02 2.35 16
3 N -0.84 -20.16 2.85 -59.90 -0.17 -20.33 16
4 C -0.29 -7.40 8.87 -15.06 -0.13 -7.53 16
5 H 0.09 2.29 7.94 -52.48 -0.42 1.87 16
6 C 0.04 1.05 4.98 -17.43 -0.09 0.97 16
7 N -0.86 -22.66 11.27 55.49 0.63 -22.03 16
8 Si 0.91 19.99 29.62 -169.99 -5.03 14.95 16
9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
12 S 2.63 60.28 5.65 -107.50 -0.61 59.67 16
13 O -0.97 -25.10 16.49 -57.17 -0.94 -26.04 16
14 O -0.99 -23.47 15.81 -57.17 -0.90 -24.38 16
15 C -0.70 -13.07 5.97 -39.58 -0.24 -13.30 16
16 C 0.04 0.65 8.50 -39.51 -0.34 0.31 16
17 C -0.18 -2.44 9.98 -39.43 -0.39 -2.83 16
18 C 0.21 2.89 6.56 -38.54 -0.25 2.63 16
19 C -0.27 -4.28 5.83 -104.86 -0.61 -4.89 16
20 C 0.08 1.43 9.12 -39.22 -0.36 1.07 16
21 C 0.40 5.64 6.98 -30.04 -0.21 5.43 16
22 O -0.44 -7.61 17.42 5.54 0.10 -7.51 16
23 C -0.20 -1.77 6.45 -27.02 -0.17 -1.94 16
24 C 0.07 0.51 6.98 37.45 0.26 0.77 16
25 O -0.31 -3.35 10.22 -17.69 -0.18 -3.53 16
26 H 0.04 0.60 7.11 -51.93 -0.37 0.23 16
27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
29 H 0.12 2.80 5.31 -51.93 -0.28 2.52 16
30 H 0.06 1.27 6.90 -51.93 -0.36 0.92 16
31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16
32 H 0.15 2.12 7.59 -52.49 -0.40 1.72 16
33 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16
34 H 0.15 2.97 7.37 -52.49 -0.39 2.59 16
35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16
36 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16
37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16
LS Contribution 334.52 15.07 5.04 5.04
Total: -1.00 -32.73 334.52 -8.55 -41.28
By element:
Atomic # 1 Polarization: 6.73 SS G_CDS: -4.30 Total: 2.44 kcal
Atomic # 6 Polarization: -17.38 SS G_CDS: -2.18 Total: -19.55 kcal
Atomic # 7 Polarization: -42.82 SS G_CDS: 0.45 Total: -42.36 kcal
Atomic # 8 Polarization: -59.54 SS G_CDS: -1.93 Total: -61.47 kcal
Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.95 kcal
Atomic # 16 Polarization: 60.28 SS G_CDS: -0.61 Total: 59.67 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -32.73 -8.55 -41.28 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000414445816.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.502 kcal
(2) G-P(sol) polarization free energy of solvation -32.726 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.780 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds