Wall clock time and date at job start Tue Mar 31 2020 14:49:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46504 * 109.46798 * 2 1
4 4 C 1.36939 * 119.99892 * 275.97162 * 3 2 1
5 5 H 1.08003 * 119.99996 * 146.59914 * 4 3 2
6 6 C 1.38812 * 119.99766 * 326.59067 * 4 3 2
7 7 N 1.31621 * 120.00527 * 336.11829 * 6 4 3
8 8 Si 1.86803 * 119.99690 * 156.11734 * 6 4 3
9 9 H 1.48498 * 109.47042 * 60.00322 * 8 6 4
10 10 H 1.48502 * 109.47221 * 180.02562 * 8 6 4
11 11 H 1.48497 * 109.47112 * 300.00122 * 8 6 4
12 12 S 1.65594 * 120.00162 * 95.97234 * 3 2 1
13 13 O 1.42095 * 106.40560 * 156.45691 * 12 3 2
14 14 O 1.42099 * 106.40177 * 23.53643 * 12 3 2
15 15 C 1.76201 * 107.21774 * 269.99769 * 12 3 2
16 16 C 1.38635 * 119.90373 * 90.00182 * 15 12 3
17 17 C 1.38025 * 120.70443 * 180.38317 * 16 15 12
18 18 C 1.38848 * 120.08578 * 359.45782 * 17 16 15
19 19 C 1.40410 * 119.17506 * 0.30537 * 18 17 16
20 20 C 1.37832 * 119.90670 * 269.97515 * 15 12 3
21 21 C 1.47353 * 119.01375 * 180.18416 * 19 18 17
22 22 O 1.21297 * 121.73583 * 168.03190 * 21 19 18
23 23 C 1.51840 * 116.51918 * 348.01583 * 21 19 18
24 24 C 1.53571 * 107.16697 * 40.00354 * 23 21 19
25 25 O 1.35332 * 120.00757 * 179.81650 * 18 17 16
26 26 H 1.08995 * 109.47140 * 299.99953 * 1 2 3
27 27 H 1.08998 * 109.46729 * 60.00206 * 1 2 3
28 28 H 1.08996 * 109.46843 * 179.97438 * 1 2 3
29 29 H 1.08995 * 109.47140 * 240.00046 * 2 1 3
30 30 H 1.09002 * 109.47130 * 119.99510 * 2 1 3
31 31 H 0.96990 * 120.00273 * 180.02562 * 7 6 4
32 32 H 1.07994 * 119.64667 * 0.10071 * 16 15 12
33 33 H 1.08001 * 119.95758 * 179.74249 * 17 16 15
34 34 H 1.07996 * 120.20568 * 0.02562 * 20 15 12
35 35 H 1.09003 * 109.91840 * 159.42235 * 23 21 19
36 36 H 1.09005 * 109.91219 * 280.58828 * 23 21 19
37 37 H 1.08994 * 109.49182 * 61.24225 * 24 23 21
38 38 H 1.09002 * 109.49434 * 181.32072 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1302 2.0679 -1.1795
5 1 1.9551 3.1334 -1.2028
6 6 2.4687 1.3945 -2.3452
7 7 3.1247 0.2552 -2.2803
8 14 1.9933 2.1052 -4.0060
9 1 2.6185 3.4422 -4.1696
10 1 2.4667 1.2015 -5.0851
11 1 0.5162 2.2367 -4.0836
12 16 2.4350 2.1122 1.4263
13 8 3.3459 3.1509 1.0938
14 8 2.7470 1.0668 2.3368
15 6 0.9880 2.9004 2.0506
16 6 0.1325 2.2075 2.8932
17 6 -1.0096 2.8061 3.3855
18 6 -1.3078 4.1196 3.0480
19 6 -0.4383 4.8223 2.1985
20 6 0.7102 4.2042 1.7003
21 6 -0.7560 6.2173 1.8460
22 8 0.0525 6.9371 1.2988
23 6 -2.1484 6.7065 2.2030
24 6 -2.4916 6.1288 3.5839
25 8 -2.4299 4.7038 3.5286
26 1 -0.3633 0.5138 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 1.8934 -0.5138 -0.8899
30 1 1.8934 -0.5138 0.8900
31 1 3.3615 -0.2151 -3.0948
32 1 0.3597 1.1869 3.1636
33 1 -1.6698 2.2537 4.0377
34 1 1.3765 4.7442 1.0440
35 1 -2.1605 7.7957 2.2427
36 1 -2.8671 6.3530 1.4635
37 1 -1.7761 6.4956 4.3197
38 1 -3.4973 6.4386 3.8681
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000414445816.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:49:53
Heat of formation + Delta-G solvation = -132.069080 kcal
Electronic energy + Delta-G solvation = -26207.844694 eV
Core-core repulsion = 22335.372608 eV
Total energy + Delta-G solvation = -3872.472086 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.086 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-42.14929 -39.73937 -38.84419 -38.08433 -37.70712 -36.63634 -33.58560 -33.57644
-32.09289 -31.71304 -30.93648 -26.52251 -26.02198 -25.20507 -23.71556 -23.33043
-21.29077 -20.22620 -19.38393 -19.07130 -18.35128 -18.19768 -17.99184 -17.06883
-16.53426 -16.46753 -16.27175 -15.91545 -15.68827 -15.36903 -15.20722 -14.94701
-14.72545 -14.46372 -14.07328 -13.99394 -13.66215 -13.32822 -13.27374 -13.12558
-12.96154 -12.85627 -12.65489 -12.60857 -12.25905 -12.20702 -12.15333 -11.98071
-11.85952 -11.53335 -10.99771 -10.86163 -10.37894 -9.85547 -9.60474 -8.19706
-5.94421 -0.68348 -0.35533 -0.15504 1.02787 1.47211 1.47524 1.56474
1.85973 2.21383 2.39467 2.65585 2.72381 2.88781 3.16138 3.29121
3.50955 3.57035 3.66372 3.94445 4.02636 4.09774 4.21642 4.42812
4.50789 4.61325 4.64306 4.67303 4.75159 4.76594 4.79600 4.85652
4.96697 4.98571 5.29996 5.33656 5.48660 5.64946 5.96955 6.03908
6.21561 6.49597 7.05099 7.43185 8.81624
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.014560 B = 0.004992 C = 0.004413
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1922.632495 B = 5607.504974 C = 6343.671640
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.101 3.899
3 N -0.852 5.852
4 C -0.310 4.310
5 H 0.081 0.919
6 C 0.002 3.998
7 N -0.887 5.887
8 Si 0.970 3.030
9 H -0.276 1.276
10 H -0.277 1.277
11 H -0.263 1.263
12 S 2.642 3.358
13 O -1.014 7.014
14 O -1.009 7.009
15 C -0.706 4.706
16 C 0.036 3.964
17 C -0.168 4.168
18 C 0.235 3.765
19 C -0.288 4.288
20 C 0.054 3.946
21 C 0.393 3.607
22 O -0.485 6.485
23 C -0.190 4.190
24 C 0.063 3.937
25 O -0.299 6.299
26 H 0.053 0.947
27 H 0.046 0.954
28 H 0.078 0.922
29 H 0.095 0.905
30 H 0.062 0.938
31 H 0.271 0.729
32 H 0.164 0.836
33 H 0.187 0.813
34 H 0.123 0.877
35 H 0.137 0.863
36 H 0.132 0.868
37 H 0.082 0.918
38 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.877 6.718 11.154 22.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.025 4.025
3 N -0.684 5.684
4 C -0.445 4.445
5 H 0.099 0.901
6 C -0.203 4.203
7 N -0.527 5.527
8 Si 0.794 3.206
9 H -0.201 1.201
10 H -0.202 1.202
11 H -0.188 1.188
12 S 2.743 3.257
13 O -1.004 7.004
14 O -0.999 6.999
15 C -0.794 4.794
16 C 0.017 3.983
17 C -0.187 4.187
18 C 0.186 3.814
19 C -0.291 4.291
20 C 0.034 3.966
21 C 0.273 3.727
22 O -0.362 6.362
23 C -0.227 4.227
24 C -0.011 4.011
25 O -0.211 6.211
26 H 0.073 0.927
27 H 0.065 0.935
28 H 0.096 0.904
29 H 0.112 0.888
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.181 0.819
33 H 0.204 0.796
34 H 0.141 0.859
35 H 0.155 0.845
36 H 0.150 0.850
37 H 0.100 0.900
38 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -16.721 6.903 11.351 21.356
hybrid contribution 0.222 0.583 -1.210 1.361
sum -16.499 7.486 10.141 20.763
Atomic orbital electron populations
1.22096 0.95598 1.02038 1.01495 1.21482 0.94289 0.82911 1.03846
1.52664 1.77142 1.21303 1.17273 1.19133 1.46337 0.93858 0.85140
0.90121 1.26010 0.94717 0.97181 1.02366 1.70051 1.34709 1.18020
1.29903 0.85352 0.79270 0.78131 0.77817 1.20117 1.20163 1.18799
1.03737 0.74572 0.73250 0.74118 1.93394 1.62309 1.60416 1.84273
1.93380 1.83782 1.56433 1.66331 1.30748 1.25236 1.06541 1.16919
1.21209 0.90034 0.99586 0.87496 1.21026 0.98969 0.93514 1.05187
1.19349 0.82948 0.92277 0.86802 1.20867 1.00320 0.99279 1.08664
1.20819 0.92831 0.91888 0.91022 1.23199 0.90635 0.85280 0.73632
1.90579 1.52759 1.58752 1.34105 1.23124 0.92957 1.05804 1.00840
1.23548 1.07625 0.74862 0.95051 1.85796 1.32785 1.24729 1.77740
0.92748 0.93475 0.90361 0.88764 0.91980 0.91978 0.81873 0.79604
0.85912 0.84491 0.84987 0.90021 0.81142
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 41.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.44 10.20 71.98 0.73 -4.71 16
2 C 0.10 4.54 6.01 86.38 0.52 5.06 16
3 N -0.85 -42.68 2.85 -343.43 -0.98 -43.66 16
4 C -0.31 -16.75 8.87 84.03 0.75 -16.01 16
5 H 0.08 4.38 7.94 -2.91 -0.02 4.36 16
6 C 0.00 0.10 4.98 84.86 0.42 0.52 16
7 N -0.89 -48.62 11.27 21.65 0.24 -48.38 16
8 Si 0.97 41.99 29.62 68.60 2.03 44.02 16
9 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16
10 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16
11 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16
12 S 2.64 126.98 5.65 -56.49 -0.32 126.67 16
13 O -1.01 -56.47 16.49 -128.00 -2.11 -58.58 16
14 O -1.01 -49.16 15.81 -128.00 -2.02 -51.18 16
15 C -0.71 -27.06 5.97 22.27 0.13 -26.92 16
16 C 0.04 1.06 8.50 22.31 0.19 1.25 16
17 C -0.17 -3.80 9.98 22.37 0.22 -3.58 16
18 C 0.23 5.52 6.56 22.95 0.15 5.67 16
19 C -0.29 -8.71 5.83 -20.02 -0.12 -8.83 16
20 C 0.05 2.08 9.12 22.51 0.21 2.28 16
21 C 0.39 10.63 6.98 28.45 0.20 10.82 16
22 O -0.48 -17.19 17.42 -3.08 -0.05 -17.25 16
23 C -0.19 -2.51 6.45 30.40 0.20 -2.31 16
24 C 0.06 0.57 6.98 72.17 0.50 1.08 16
25 O -0.30 -4.84 10.22 -86.21 -0.88 -5.72 16
26 H 0.05 1.71 7.11 -2.39 -0.02 1.69 16
27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
29 H 0.09 4.71 5.31 -2.39 -0.01 4.69 16
30 H 0.06 2.69 6.90 -2.39 -0.02 2.67 16
31 H 0.27 13.90 8.31 -92.72 -0.77 13.13 16
32 H 0.16 4.29 7.59 -2.91 -0.02 4.27 16
33 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16
34 H 0.12 5.31 7.37 -2.91 -0.02 5.29 16
35 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16
37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16
38 H 0.17 0.09 8.14 -2.39 -0.02 0.07 16
Total: -1.00 -77.06 334.52 1.11 -75.95
By element:
Atomic # 1 Polarization: 12.71 SS G_CDS: 1.10 Total: 13.81 kcal
Atomic # 6 Polarization: -39.78 SS G_CDS: 4.10 Total: -35.67 kcal
Atomic # 7 Polarization: -91.30 SS G_CDS: -0.73 Total: -92.04 kcal
Atomic # 8 Polarization: -127.66 SS G_CDS: -5.07 Total: -132.73 kcal
Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal
Atomic # 16 Polarization: 126.98 SS G_CDS: -0.32 Total: 126.67 kcal
Total: -77.06 1.11 -75.95 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000414445816.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.123 kcal
(2) G-P(sol) polarization free energy of solvation -77.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.069 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds