Wall clock time and date at job start Tue Mar 31 2020 14:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46599 * 2 1 4 4 C 1.50694 * 109.47079 * 120.00110 * 2 1 3 5 5 H 1.07999 * 119.99926 * 120.00561 * 4 2 1 6 6 C 1.37873 * 120.00245 * 299.99966 * 4 2 1 7 7 N 1.31520 * 120.00021 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00138 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47224 * 90.00135 * 8 6 4 10 10 H 1.48503 * 109.47241 * 210.00646 * 8 6 4 11 11 H 1.48500 * 109.47021 * 330.00246 * 8 6 4 12 12 N 1.46499 * 109.47407 * 240.00851 * 2 1 3 13 13 S 1.65597 * 120.00398 * 94.99660 * 12 2 1 14 14 O 1.42100 * 106.40092 * 311.46022 * 13 12 2 15 15 O 1.42101 * 106.40244 * 178.54396 * 13 12 2 16 16 C 1.76198 * 107.21948 * 65.00219 * 13 12 2 17 17 C 1.38629 * 119.90125 * 270.02304 * 16 13 12 18 18 C 1.38033 * 120.70555 * 180.16364 * 17 16 13 19 19 C 1.38835 * 120.08098 * 0.02562 * 18 17 16 20 20 C 1.40407 * 119.18355 * 359.67630 * 19 18 17 21 21 C 1.37832 * 119.90602 * 89.99782 * 16 13 12 22 22 C 1.47350 * 119.02173 * 180.50896 * 20 19 18 23 23 O 1.21303 * 121.74076 * 167.86826 * 22 20 19 24 24 C 1.51841 * 116.51435 * 348.14051 * 22 20 19 25 25 C 1.53221 * 107.34796 * 39.70369 * 24 22 20 26 26 O 1.35333 * 120.00575 * 179.37857 * 19 18 17 27 27 H 1.09001 * 109.47609 * 299.99660 * 1 2 3 28 28 H 1.09005 * 109.47052 * 60.00140 * 1 2 3 29 29 H 1.09006 * 109.46659 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99793 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99234 * 274.99762 * 12 2 1 32 32 H 1.08001 * 119.64787 * 0.18317 * 17 16 13 33 33 H 1.07996 * 119.95384 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.20580 * 359.97438 * 21 16 13 35 35 H 1.08994 * 109.91572 * 159.21105 * 24 22 20 36 36 H 1.08998 * 109.91905 * 280.38779 * 24 22 20 37 37 H 1.09002 * 109.53618 * 181.51242 * 25 24 22 38 38 H 1.09006 * 109.31839 * 61.52479 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6304 -0.5441 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4881 -2.5654 3.7120 12 7 2.0184 -0.6904 -1.1962 13 16 2.4122 0.1775 -2.5505 14 8 1.3246 1.0595 -2.7921 15 8 2.8776 -0.7631 -3.5086 16 6 3.7927 1.1913 -2.1371 17 6 3.5875 2.4651 -1.6301 18 6 4.6569 3.2746 -1.3039 19 6 5.9556 2.8175 -1.4823 20 6 6.1627 1.5249 -1.9900 21 6 5.0735 0.7154 -2.3183 22 6 7.5425 1.0391 -2.1674 23 8 7.7842 -0.1282 -2.3922 24 6 8.6464 2.0748 -2.0477 25 6 8.2678 3.0154 -0.8990 26 8 7.0030 3.6171 -1.1738 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7081 1.1607 3.4845 31 1 2.1110 -1.6560 -1.1950 32 1 2.5802 2.8278 -1.4885 33 1 4.4830 4.2648 -0.9093 34 1 5.2337 -0.2773 -2.7126 35 1 9.5942 1.5835 -1.8280 36 1 8.7268 2.6408 -2.9758 37 1 9.0260 3.7921 -0.7989 38 1 8.2059 2.4456 0.0282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416380182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:48 Heat of formation + Delta-G solvation = -123.674162 kcal Electronic energy + Delta-G solvation = -25794.824037 eV Core-core repulsion = 21922.715981 eV Total energy + Delta-G solvation = -3872.108055 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18403 -38.68497 -37.81186 -36.76381 -35.46598 -35.33932 -32.72921 -32.23591 -31.06497 -30.65805 -28.30484 -25.26042 -25.17615 -24.17512 -22.65329 -20.98474 -20.31056 -18.77267 -18.39289 -17.65848 -17.16153 -17.09148 -16.15398 -15.95394 -15.42351 -15.28194 -14.97764 -14.75848 -14.69037 -14.18480 -13.98710 -13.72973 -13.47320 -12.97937 -12.68329 -12.36466 -12.28533 -12.22372 -11.74844 -11.65688 -11.54701 -11.48449 -11.21516 -11.16884 -11.02457 -10.73569 -10.60606 -10.31200 -10.15032 -9.91427 -9.27624 -9.18202 -8.80923 -8.64825 -8.34341 -6.18103 -4.26033 0.43118 0.86622 1.07157 2.08072 2.71576 3.20821 3.28365 3.30938 3.36655 3.59743 3.75066 4.17968 4.25908 4.31100 4.38713 4.45330 4.61548 4.78258 4.97919 5.03194 5.11212 5.13940 5.29730 5.34199 5.52107 5.75150 5.78294 5.90436 6.07184 6.28020 6.44535 6.79146 6.98293 7.01585 7.05809 7.19023 7.54069 7.66893 7.77307 7.99551 8.23134 8.77363 9.40630 10.87448 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.005075 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.386736 B = 5515.835029 C = 6692.128471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.274 3.726 3 H 0.041 0.959 4 C -0.526 4.526 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.099 6.099 13 S 2.692 3.308 14 O -0.960 6.960 15 O -0.980 6.980 16 C -0.709 4.709 17 C 0.054 3.946 18 C -0.178 4.178 19 C 0.222 3.778 20 C -0.276 4.276 21 C 0.077 3.923 22 C 0.402 3.598 23 O -0.442 6.442 24 C -0.203 4.203 25 C 0.067 3.933 26 O -0.307 6.307 27 H 0.092 0.908 28 H 0.026 0.974 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.411 0.589 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.121 6.517 -6.487 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.170 3.830 3 H 0.058 0.942 4 C -0.565 4.565 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.860 5.860 13 S 2.780 3.220 14 O -0.950 6.950 15 O -0.970 6.970 16 C -0.794 4.794 17 C 0.035 3.965 18 C -0.197 4.197 19 C 0.175 3.825 20 C -0.279 4.279 21 C 0.058 3.942 22 C 0.279 3.721 23 O -0.316 6.316 24 C -0.241 4.241 25 C -0.007 4.007 26 O -0.219 6.219 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.245 0.755 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.771 6.421 -7.238 15.238 hybrid contribution 1.107 -0.622 1.486 1.955 sum 12.878 5.799 -5.752 15.250 Atomic orbital electron populations 1.22243 0.97936 1.00087 1.01546 1.18548 0.91537 0.92069 0.80847 0.94177 1.21295 1.31966 1.13287 0.90000 0.91762 1.24898 0.94808 0.95022 0.99017 1.69871 1.35967 1.22625 1.23945 0.86497 0.78535 0.80096 0.82303 1.20696 1.21037 1.19780 1.55574 1.80624 1.18532 1.31276 1.01853 0.73665 0.73434 0.73080 1.93568 1.50173 1.67044 1.84233 1.93533 1.82458 1.61575 1.59437 1.31195 1.16755 1.11605 1.19871 1.21064 1.00120 0.90121 0.85195 1.20694 0.88934 1.02844 1.07215 1.19336 0.87840 0.87450 0.87921 1.20536 0.96144 0.96963 1.14223 1.20871 0.89508 0.97795 0.86062 1.22351 0.89002 0.88811 0.71941 1.90581 1.86023 1.19214 1.35775 1.22999 1.00215 0.98648 1.02220 1.23020 0.82979 0.97731 0.97019 1.85769 1.17674 1.35314 1.83147 0.88942 0.95478 0.94821 0.92545 0.75528 0.82735 0.83465 0.83128 0.86889 0.86801 0.85826 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.29 37.16 0.35 -3.35 16 2 C 0.27 6.36 2.76 -69.09 -0.19 6.17 16 3 H 0.04 0.96 7.22 -51.92 -0.38 0.58 16 4 C -0.53 -13.30 8.76 -34.44 -0.30 -13.60 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.45 11.32 55.43 0.63 -22.83 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -1.10 -21.71 5.46 -5.88 -0.03 -21.75 16 13 S 2.69 50.02 5.65 -107.50 -0.61 49.42 16 14 O -0.96 -19.61 16.53 -57.17 -0.94 -20.55 16 15 O -0.98 -19.29 17.28 -57.17 -0.99 -20.28 16 16 C -0.71 -12.09 5.82 -39.59 -0.23 -12.32 16 17 C 0.05 0.85 8.87 -39.51 -0.35 0.50 16 18 C -0.18 -2.46 9.98 -39.44 -0.39 -2.85 16 19 C 0.22 3.01 6.56 -38.54 -0.25 2.76 16 20 C -0.28 -4.08 5.84 -104.86 -0.61 -4.69 16 21 C 0.08 1.27 9.12 -39.21 -0.36 0.91 16 22 C 0.40 5.32 6.98 -30.04 -0.21 5.11 16 23 O -0.44 -7.12 17.43 5.54 0.10 -7.03 16 24 C -0.20 -1.66 6.43 -27.21 -0.17 -1.83 16 25 C 0.07 0.51 6.96 37.27 0.26 0.77 16 26 O -0.31 -3.39 10.22 -17.69 -0.18 -3.57 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 28 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.41 7.43 8.83 -34.47 -0.30 7.12 16 32 H 0.16 2.30 7.60 -52.49 -0.40 1.91 16 33 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.15 2.44 7.37 -52.49 -0.39 2.05 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -32.12 337.02 -8.79 -40.91 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.26 Total: 6.28 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -2.56 Total: -20.83 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.60 Total: -44.57 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -2.02 Total: -51.43 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 50.02 SS G_CDS: -0.61 Total: 49.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.12 -8.79 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416380182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.764 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds