Wall clock time and date at job start Tue Mar 31 2020 14:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46599 * 2 1 4 4 C 1.50694 * 109.47079 * 120.00110 * 2 1 3 5 5 H 1.07999 * 119.99926 * 120.00561 * 4 2 1 6 6 C 1.37873 * 120.00245 * 299.99966 * 4 2 1 7 7 N 1.31520 * 120.00021 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00138 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47224 * 90.00135 * 8 6 4 10 10 H 1.48503 * 109.47241 * 210.00646 * 8 6 4 11 11 H 1.48500 * 109.47021 * 330.00246 * 8 6 4 12 12 N 1.46499 * 109.47407 * 240.00851 * 2 1 3 13 13 S 1.65597 * 120.00398 * 94.99660 * 12 2 1 14 14 O 1.42100 * 106.40092 * 311.46022 * 13 12 2 15 15 O 1.42101 * 106.40244 * 178.54396 * 13 12 2 16 16 C 1.76198 * 107.21948 * 65.00219 * 13 12 2 17 17 C 1.38629 * 119.90125 * 270.02304 * 16 13 12 18 18 C 1.38033 * 120.70555 * 180.16364 * 17 16 13 19 19 C 1.38835 * 120.08098 * 0.02562 * 18 17 16 20 20 C 1.40407 * 119.18355 * 359.67630 * 19 18 17 21 21 C 1.37832 * 119.90602 * 89.99782 * 16 13 12 22 22 C 1.47350 * 119.02173 * 180.50896 * 20 19 18 23 23 O 1.21303 * 121.74076 * 167.86826 * 22 20 19 24 24 C 1.51841 * 116.51435 * 348.14051 * 22 20 19 25 25 C 1.53221 * 107.34796 * 39.70369 * 24 22 20 26 26 O 1.35333 * 120.00575 * 179.37857 * 19 18 17 27 27 H 1.09001 * 109.47609 * 299.99660 * 1 2 3 28 28 H 1.09005 * 109.47052 * 60.00140 * 1 2 3 29 29 H 1.09006 * 109.46659 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99793 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99234 * 274.99762 * 12 2 1 32 32 H 1.08001 * 119.64787 * 0.18317 * 17 16 13 33 33 H 1.07996 * 119.95384 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.20580 * 359.97438 * 21 16 13 35 35 H 1.08994 * 109.91572 * 159.21105 * 24 22 20 36 36 H 1.08998 * 109.91905 * 280.38779 * 24 22 20 37 37 H 1.09002 * 109.53618 * 181.51242 * 25 24 22 38 38 H 1.09006 * 109.31839 * 61.52479 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6304 -0.5441 4.4118 10 1 1.3444 -0.9493 5.1122 11 1 2.4881 -2.5654 3.7120 12 7 2.0184 -0.6904 -1.1962 13 16 2.4122 0.1775 -2.5505 14 8 1.3246 1.0595 -2.7921 15 8 2.8776 -0.7631 -3.5086 16 6 3.7927 1.1913 -2.1371 17 6 3.5875 2.4651 -1.6301 18 6 4.6569 3.2746 -1.3039 19 6 5.9556 2.8175 -1.4823 20 6 6.1627 1.5249 -1.9900 21 6 5.0735 0.7154 -2.3183 22 6 7.5425 1.0391 -2.1674 23 8 7.7842 -0.1282 -2.3922 24 6 8.6464 2.0748 -2.0477 25 6 8.2678 3.0154 -0.8990 26 8 7.0030 3.6171 -1.1738 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7081 1.1607 3.4845 31 1 2.1110 -1.6560 -1.1950 32 1 2.5802 2.8278 -1.4885 33 1 4.4830 4.2648 -0.9093 34 1 5.2337 -0.2773 -2.7126 35 1 9.5942 1.5835 -1.8280 36 1 8.7268 2.6408 -2.9758 37 1 9.0260 3.7921 -0.7989 38 1 8.2059 2.4456 0.0282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416380182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:47 Heat of formation + Delta-G solvation = -146.895559 kcal Electronic energy + Delta-G solvation = -25795.830992 eV Core-core repulsion = 21922.715981 eV Total energy + Delta-G solvation = -3873.115011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.16903 -39.73996 -38.87715 -38.34741 -37.24508 -36.92956 -34.11842 -33.60496 -32.11878 -31.76872 -30.11979 -27.21709 -26.05552 -25.24808 -23.73735 -22.82076 -21.44379 -20.18584 -19.40032 -19.15761 -18.50548 -18.14572 -17.84808 -17.13627 -16.93420 -16.50183 -16.33778 -15.92923 -15.68935 -15.44526 -15.22768 -14.98826 -14.73462 -14.51305 -14.05976 -13.89281 -13.54446 -13.35803 -13.32113 -13.26616 -13.07894 -13.00335 -12.83655 -12.38768 -12.31840 -12.22488 -12.19709 -12.03313 -11.95601 -11.11916 -10.91931 -10.58605 -10.39372 -10.14075 -9.86114 -8.13382 -6.26898 -0.70353 -0.53198 -0.22011 1.01689 1.43253 1.46311 1.54852 1.84048 2.05979 2.35242 2.46356 2.67777 2.78384 3.16313 3.25117 3.39369 3.54018 3.63713 3.89508 4.01188 4.08206 4.15998 4.47548 4.51131 4.61271 4.61910 4.65627 4.77484 4.82491 4.89286 4.94521 5.12768 5.18658 5.32045 5.60422 5.76588 6.02106 6.03557 6.09540 6.19646 6.40583 6.82812 7.42363 8.91696 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.005075 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.386736 B = 5515.835029 C = 6692.128471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.277 3.723 3 H 0.032 0.968 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.271 1.271 12 N -1.100 6.100 13 S 2.708 3.292 14 O -0.982 6.982 15 O -0.993 6.993 16 C -0.721 4.721 17 C 0.038 3.962 18 C -0.177 4.177 19 C 0.236 3.764 20 C -0.290 4.290 21 C 0.060 3.940 22 C 0.397 3.603 23 O -0.480 6.480 24 C -0.190 4.190 25 C 0.059 3.941 26 O -0.302 6.302 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.266 0.734 31 H 0.417 0.583 32 H 0.156 0.844 33 H 0.176 0.824 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.171 0.829 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.579 7.839 -5.807 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.172 3.828 3 H 0.050 0.950 4 C -0.580 4.580 5 H 0.082 0.918 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.861 5.861 13 S 2.799 3.201 14 O -0.972 6.972 15 O -0.984 6.984 16 C -0.810 4.810 17 C 0.019 3.981 18 C -0.196 4.196 19 C 0.187 3.813 20 C -0.293 4.293 21 C 0.040 3.960 22 C 0.277 3.723 23 O -0.357 6.357 24 C -0.227 4.227 25 C -0.014 4.014 26 O -0.214 6.214 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.251 0.749 32 H 0.174 0.826 33 H 0.193 0.807 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.188 0.812 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.212 7.725 -6.570 17.459 hybrid contribution 0.460 -0.957 1.248 1.639 sum 14.672 6.768 -5.321 17.012 Atomic orbital electron populations 1.22154 0.98219 1.00023 1.00860 1.18331 0.91311 0.91789 0.81403 0.94996 1.21573 1.31983 1.13410 0.90989 0.91847 1.25572 0.95031 0.95667 1.01461 1.69971 1.36700 1.23579 1.24515 0.85613 0.78017 0.79098 0.79232 1.20342 1.20787 1.19554 1.55419 1.81135 1.19022 1.30525 1.01112 0.73584 0.72976 0.72394 1.93530 1.51805 1.67322 1.84514 1.93507 1.82712 1.62381 1.59777 1.30765 1.15942 1.12110 1.22143 1.21208 1.01092 0.90032 0.85792 1.20994 0.88615 1.03649 1.06297 1.19364 0.88725 0.86803 0.86387 1.20881 0.96849 0.97481 1.14098 1.20926 0.90072 0.98049 0.86954 1.23065 0.89617 0.89278 0.70380 1.90567 1.86442 1.21085 1.37581 1.23047 0.98894 0.97177 1.03550 1.23490 0.82097 0.99203 0.96612 1.85798 1.18251 1.35054 1.82264 0.90785 0.94903 0.94532 0.92457 0.74855 0.82625 0.80674 0.83925 0.84403 0.84613 0.81209 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.24 9.29 71.98 0.67 -6.57 16 2 C 0.28 13.05 2.76 44.24 0.12 13.17 16 3 H 0.03 1.56 7.22 -2.38 -0.02 1.55 16 4 C -0.54 -27.46 8.76 25.60 0.22 -27.23 16 5 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -48.30 11.32 21.45 0.24 -48.05 16 8 Si 0.95 41.03 29.54 68.60 2.03 43.05 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 12 N -1.10 -44.50 5.46 -172.53 -0.94 -45.44 16 13 S 2.71 103.53 5.65 -56.49 -0.32 103.21 16 14 O -0.98 -41.06 16.53 -128.00 -2.12 -43.18 16 15 O -0.99 -40.20 17.28 -128.00 -2.21 -42.41 16 16 C -0.72 -25.12 5.82 22.27 0.13 -24.99 16 17 C 0.04 1.20 8.87 22.31 0.20 1.39 16 18 C -0.18 -4.61 9.98 22.36 0.22 -4.39 16 19 C 0.24 5.91 6.56 22.94 0.15 6.06 16 20 C -0.29 -8.33 5.84 -20.02 -0.12 -8.45 16 21 C 0.06 2.00 9.12 22.51 0.21 2.21 16 22 C 0.40 9.93 6.98 28.45 0.20 10.13 16 23 O -0.48 -15.35 17.43 -3.10 -0.05 -15.40 16 24 C -0.19 -2.36 6.43 30.29 0.19 -2.16 16 25 C 0.06 0.64 6.96 72.06 0.50 1.14 16 26 O -0.30 -5.54 10.22 -86.21 -0.88 -6.42 16 27 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 28 H 0.03 1.46 7.64 -2.38 -0.02 1.44 16 29 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.42 15.45 8.83 -96.74 -0.85 14.60 16 32 H 0.16 4.74 7.60 -2.91 -0.02 4.71 16 33 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.14 4.87 7.37 -2.91 -0.02 4.84 16 35 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.17 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -69.53 337.02 -0.85 -70.37 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.26 Total: 22.30 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 3.15 Total: -38.03 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -0.70 Total: -93.49 kcal Atomic # 8 Polarization: -102.15 SS G_CDS: -5.26 Total: -107.42 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 103.53 SS G_CDS: -0.32 Total: 103.21 kcal Total: -69.53 -0.85 -70.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416380182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.522 kcal (2) G-P(sol) polarization free energy of solvation -69.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds