Wall clock time and date at job start Tue Mar 31 2020 14:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 H 1.09000 * 109.47420 * 302.85265 * 3 2 1 5 5 C 1.53001 * 109.47365 * 182.84666 * 3 2 1 6 6 C 1.52996 * 109.47127 * 175.00466 * 5 3 2 7 7 C 1.50709 * 109.46956 * 180.02562 * 6 5 3 8 8 C 1.38238 * 119.98796 * 89.99642 * 7 6 5 9 9 C 1.38222 * 120.00597 * 179.72560 * 8 7 6 10 10 C 1.38328 * 119.98992 * 0.25281 * 9 8 7 11 11 Br 1.89098 * 120.00990 * 180.02562 * 10 9 8 12 12 C 1.38321 * 119.98227 * 0.02562 * 10 9 8 13 13 C 1.38223 * 119.98960 * 359.97438 * 12 10 9 14 14 N 1.46908 * 109.46901 * 62.84679 * 3 2 1 15 15 C 1.46903 * 110.99698 * 65.09837 * 14 3 2 16 16 C 1.50697 * 109.46781 * 185.57206 * 15 14 3 17 17 H 1.07993 * 120.00278 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99767 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99801 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46842 * 90.00262 * 20 18 16 22 22 H 1.48501 * 109.46871 * 210.00094 * 20 18 16 23 23 H 1.48493 * 109.47117 * 330.00088 * 20 18 16 24 24 H 1.08998 * 109.47145 * 54.60570 * 1 2 3 25 25 H 1.09004 * 109.46624 * 174.59803 * 1 2 3 26 26 H 1.08990 * 109.47560 * 294.60433 * 1 2 3 27 27 H 1.09002 * 109.47263 * 240.00463 * 2 1 3 28 28 H 1.08997 * 109.47298 * 120.00127 * 2 1 3 29 29 H 1.09001 * 109.46970 * 55.00226 * 5 3 2 30 30 H 1.08999 * 109.47068 * 295.00389 * 5 3 2 31 31 H 1.09001 * 109.47392 * 60.00018 * 6 5 3 32 32 H 1.08999 * 109.47084 * 299.99913 * 6 5 3 33 33 H 1.07994 * 119.99890 * 0.02562 * 8 7 6 34 34 H 1.08003 * 120.00498 * 180.27855 * 9 8 7 35 35 H 1.07997 * 120.00937 * 180.02562 * 12 10 9 36 36 H 1.07999 * 119.99637 * 179.97438 * 13 12 10 37 37 H 1.00900 * 111.00025 * 189.05120 * 14 3 2 38 38 H 1.08999 * 109.47262 * 305.57221 * 15 14 3 39 39 H 1.08996 * 109.47042 * 65.57581 * 15 14 3 40 40 H 0.97002 * 119.99929 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6355 1.9709 -0.8633 5 6 3.5683 1.4432 -0.0716 6 6 4.0723 2.8823 -0.1972 7 6 5.5777 2.8829 -0.2684 8 6 6.2115 2.7988 -1.4940 9 6 7.5921 2.8050 -1.5602 10 6 8.3396 2.8902 -0.3993 11 35 10.2284 2.8995 -0.4892 12 6 7.7050 2.9685 0.8272 13 6 6.3243 2.9622 0.8924 14 7 1.6072 2.1149 1.2324 15 6 2.2314 1.5028 2.4130 16 6 1.6620 2.1252 3.6617 17 1 0.9113 2.8978 3.5860 18 6 2.0988 1.7075 4.9010 19 7 3.0127 0.7663 4.9933 20 14 1.3925 2.4785 6.4490 21 1 0.1998 1.7089 6.8854 22 1 2.4164 2.4567 7.5244 23 1 0.9999 3.8827 6.1677 24 1 -0.3633 0.5952 -0.8377 25 1 -0.3633 -1.0232 -0.0968 26 1 -0.3634 0.4278 0.9342 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8916 0.8680 -0.9392 30 1 3.9747 0.9937 0.8344 31 1 3.7490 3.4576 0.6704 32 1 3.6659 3.3319 -1.1032 33 1 5.6279 2.7331 -2.4003 34 1 8.0872 2.7438 -2.5181 35 1 8.2881 3.0354 1.7338 36 1 5.8287 3.0230 1.8501 37 1 1.8021 3.1040 1.1923 38 1 2.0297 0.4316 2.4164 39 1 3.3081 1.6697 2.3823 40 1 3.3197 0.4722 5.8652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426005867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:48 Heat of formation + Delta-G solvation = -11.728736 kcal Electronic energy + Delta-G solvation = -19466.613647 eV Core-core repulsion = 16518.721612 eV Total energy + Delta-G solvation = -2947.892035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.53396 -38.95093 -35.16945 -34.59820 -32.72646 -32.11622 -32.03619 -29.92841 -28.24473 -26.34951 -24.33888 -23.81999 -23.46742 -21.68953 -20.29431 -18.78916 -17.63958 -16.91864 -16.68832 -16.42404 -16.12351 -15.50507 -15.05428 -14.84474 -14.47146 -14.42192 -14.13218 -13.95545 -13.89327 -13.42539 -13.35623 -12.78195 -12.67884 -12.54517 -12.39352 -12.27935 -12.09384 -11.81436 -11.76378 -11.59670 -11.43565 -11.29193 -11.26439 -11.09472 -10.57935 -10.03047 -9.54992 -8.89359 -8.17168 -6.26107 0.06660 0.30537 0.60096 1.40657 1.41379 1.52188 2.41689 2.58934 3.16021 3.63135 3.75338 3.84078 3.93134 4.04254 4.13870 4.34205 4.37408 4.46402 4.49142 4.60430 4.65241 4.78241 4.82969 4.87431 4.99177 5.06952 5.16406 5.18330 5.21619 5.22805 5.26004 5.34024 5.46267 5.57185 5.62435 5.65413 5.70555 5.83856 6.14524 6.62117 6.86333 7.01426 7.44299 8.93045 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003150 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.597396 B = 8887.147644 C =10535.549055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C 0.088 3.912 4 H 0.097 0.903 5 C -0.140 4.140 6 C -0.076 4.076 7 C -0.064 4.064 8 C -0.109 4.109 9 C -0.089 4.089 10 C -0.108 4.108 11 Br -0.050 7.050 12 C -0.097 4.097 13 C -0.128 4.128 14 N -0.681 5.681 15 C 0.214 3.786 16 C -0.530 4.530 17 H 0.059 0.941 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.961 3.039 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.264 1.264 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.030 0.970 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.332 0.668 38 H 0.001 0.999 39 H -0.030 1.030 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.397 4.460 -17.087 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C -0.022 4.022 4 H 0.115 0.885 5 C -0.179 4.179 6 C -0.113 4.113 7 C -0.064 4.064 8 C -0.127 4.127 9 C -0.109 4.109 10 C -0.187 4.187 11 Br 0.035 6.965 12 C -0.117 4.117 13 C -0.147 4.147 14 N -0.311 5.311 15 C 0.086 3.914 16 C -0.568 4.568 17 H 0.077 0.923 18 C -0.193 4.193 19 N -0.573 5.573 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.188 1.188 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.151 0.849 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.019 0.981 39 H -0.013 1.013 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.614 4.002 -16.937 20.923 hybrid contribution 0.443 0.324 1.570 1.663 sum 12.057 4.326 -15.367 20.006 Atomic orbital electron populations 1.21522 0.95056 1.00673 1.01667 1.21556 0.97059 0.95971 1.00688 1.21719 0.91641 0.95531 0.93284 0.88546 1.22209 0.97834 0.96313 1.01528 1.20609 0.90186 0.97222 1.03326 1.20206 0.96387 0.96494 0.93316 1.21338 0.93957 0.99582 0.97871 1.21380 0.93985 0.97910 0.97594 1.21887 0.90604 1.09681 0.96517 1.96675 1.02953 1.97828 1.99052 1.21183 0.94562 0.98852 0.97092 1.21206 0.93761 1.00871 0.98846 1.60646 1.61897 1.06619 1.01906 1.19133 0.90876 0.93875 0.87483 1.21626 1.22336 1.21013 0.91852 0.92296 1.25811 0.95433 0.95665 1.02435 1.70084 1.31412 1.30760 1.25064 0.85512 0.77965 0.79184 0.78740 1.20183 1.20996 1.18832 0.91646 0.93069 0.94369 0.90312 0.95139 0.90323 0.94683 0.92553 0.88139 0.82284 0.82754 0.84924 0.87036 0.85043 0.98118 1.01280 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.71 71.98 0.70 -3.31 16 2 C -0.11 -3.67 5.28 30.59 0.16 -3.51 16 3 C 0.09 2.77 2.55 44.91 0.11 2.88 16 4 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 5 C -0.14 -4.19 4.31 30.59 0.13 -4.06 16 6 C -0.08 -2.01 5.12 29.85 0.15 -1.86 16 7 C -0.06 -1.67 5.13 -19.86 -0.10 -1.77 16 8 C -0.11 -2.26 9.70 22.27 0.22 -2.04 16 9 C -0.09 -1.82 9.79 22.29 0.22 -1.60 16 10 C -0.11 -2.55 6.22 22.31 0.14 -2.42 16 11 Br -0.05 -1.04 33.70 -20.37 -0.69 -1.73 16 12 C -0.10 -2.62 9.79 22.29 0.22 -2.40 16 13 C -0.13 -3.84 9.70 22.27 0.22 -3.62 16 14 N -0.68 -27.16 5.74 -495.56 -2.84 -30.00 16 15 C 0.21 10.94 4.55 85.56 0.39 11.33 16 16 C -0.53 -29.82 9.36 25.60 0.24 -29.58 16 17 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 18 C 0.00 0.26 5.46 84.66 0.46 0.72 16 19 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 20 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.04 1.40 7.85 -2.39 -0.02 1.38 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.03 1.20 6.29 -2.39 -0.02 1.18 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.03 1.36 6.17 -2.39 -0.01 1.34 16 31 H 0.06 1.74 6.95 -2.39 -0.02 1.73 16 32 H 0.10 2.03 8.08 -2.39 -0.02 2.01 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 36 H 0.11 3.82 8.06 -2.91 -0.02 3.79 16 37 H 0.33 12.55 7.58 -89.69 -0.68 11.87 16 38 H 0.00 0.04 6.14 -2.39 -0.01 0.03 16 39 H -0.03 -1.66 6.45 -2.39 -0.02 -1.68 16 40 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -63.27 344.83 2.38 -60.89 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.34 Total: 21.44 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 3.26 Total: -41.24 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.56 Total: -85.91 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 35 Polarization: -1.04 SS G_CDS: -0.69 Total: -1.73 kcal Total: -63.27 2.38 -60.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426005867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.162 kcal (2) G-P(sol) polarization free energy of solvation -63.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds