Wall clock time and date at job start Tue Mar 31 2020 14:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99923 * 2 1 4 4 N 1.46899 * 109.47444 * 124.99979 * 3 2 1 5 5 C 1.46901 * 110.99657 * 300.08387 * 4 3 2 6 6 C 1.50701 * 109.46874 * 170.40142 * 5 4 3 7 7 H 1.07994 * 120.00532 * 355.01935 * 6 5 4 8 8 C 1.37886 * 119.99788 * 175.02070 * 6 5 4 9 9 N 1.31513 * 119.99959 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99931 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46859 * 89.99898 * 10 8 6 12 12 H 1.48497 * 109.46661 * 209.99959 * 10 8 6 13 13 H 1.48501 * 109.47019 * 329.99759 * 10 8 6 14 14 C 1.46896 * 111.00381 * 176.13202 * 4 3 2 15 15 H 1.08998 * 110.27177 * 175.49854 * 14 4 3 16 16 C 1.54347 * 110.38305 * 297.62336 * 14 4 3 17 17 C 1.54344 * 102.39803 * 92.61122 * 16 14 4 18 18 C 1.51380 * 105.17032 * 26.35398 * 17 16 14 19 19 C 1.38249 * 109.75297 * 342.81105 * 18 17 16 20 20 C 1.38440 * 119.86779 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.23883 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 120.04419 * 179.70361 * 21 20 19 23 23 C 1.38312 * 119.91564 * 359.97438 * 21 20 19 24 24 C 1.38240 * 119.90795 * 0.03163 * 23 21 20 25 25 Cl 1.73600 * 119.89551 * 180.02562 * 24 23 21 26 26 H 1.07995 * 119.99867 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99935 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99935 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47531 * 4.99724 * 3 2 1 30 30 H 1.09005 * 109.47081 * 244.99626 * 3 2 1 31 31 H 1.09001 * 109.47158 * 290.40304 * 5 4 3 32 32 H 1.08998 * 109.47314 * 50.40314 * 5 4 3 33 33 H 0.96993 * 119.99781 * 179.97438 * 9 8 6 34 34 H 1.09008 * 110.82252 * 210.83550 * 16 14 4 35 35 H 1.08997 * 110.82527 * 334.18745 * 16 14 4 36 36 H 1.09000 * 110.30689 * 145.27427 * 17 16 14 37 37 H 1.09000 * 110.30623 * 267.43341 * 17 16 14 38 38 H 1.08004 * 119.88285 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.04584 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3321 1.1345 5 6 2.2784 1.2007 2.4094 6 6 3.2702 0.9958 3.5255 7 1 4.3207 0.8856 3.3009 8 6 2.8362 0.9490 4.8334 9 7 3.7016 0.7697 5.8073 10 14 1.0191 1.1403 5.2220 11 1 0.3691 -0.1949 5.2194 12 1 0.8622 1.7647 6.5601 13 1 0.3815 2.0032 4.1952 14 6 3.8146 2.5518 1.1144 15 1 4.4452 2.5982 2.0023 16 6 4.6822 2.5961 -0.1614 17 6 3.7930 3.3932 -1.1393 18 6 2.9168 4.2606 -0.2609 19 6 2.9293 3.7770 1.0343 20 6 2.1930 4.4173 2.0163 21 6 1.4449 5.5380 1.7064 22 17 0.5174 6.3323 2.9402 23 6 1.4321 6.0221 0.4108 24 6 2.1668 5.3837 -0.5709 25 17 2.1509 5.9920 -2.1967 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 1.7023 2.1068 2.5970 32 1 1.6046 0.3454 2.3606 33 1 3.3963 0.7371 6.7274 34 1 5.6194 3.1206 0.0253 35 1 4.8711 1.5904 -0.5367 36 1 4.4086 4.0141 -1.7901 37 1 3.1799 2.7143 -1.7321 38 1 2.2023 4.0395 3.0281 39 1 0.8481 6.8971 0.1663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428853627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:25 Heat of formation + Delta-G solvation = 43.220590 kcal Electronic energy + Delta-G solvation = -23698.165676 eV Core-core repulsion = 20271.960179 eV Total energy + Delta-G solvation = -3426.205498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.070 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72856 -37.67279 -36.74372 -36.09347 -34.59124 -33.24318 -32.04470 -30.61956 -29.01230 -27.82293 -26.98161 -23.88517 -22.82507 -21.75472 -20.96557 -19.90760 -19.13620 -17.24114 -16.40919 -16.22825 -15.77715 -15.30111 -14.91444 -14.34304 -14.20861 -14.03117 -13.67610 -13.57989 -13.08526 -12.86499 -12.41782 -12.28138 -12.16196 -11.99814 -11.73971 -11.56446 -11.37509 -11.21942 -11.09479 -10.90208 -10.85765 -10.78681 -10.51015 -10.42702 -10.22360 -9.93198 -9.36829 -9.01689 -8.70348 -8.61668 -8.45321 -7.56660 -6.10541 -4.07957 1.03525 1.12113 1.82782 2.30830 2.58683 3.24834 3.32998 3.35639 3.46352 4.37296 4.38590 4.52928 4.75971 4.98456 5.11522 5.16342 5.23150 5.27277 5.34684 5.44511 5.50582 5.62918 5.70247 5.85045 5.85569 5.95344 6.03536 6.14223 6.17305 6.19487 6.32322 6.46204 6.53605 6.67103 6.84259 6.90085 6.93719 7.04131 7.53822 7.78081 7.91344 8.57947 8.97897 9.51492 11.02196 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.005883 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.753884 B = 4758.443919 C = 5951.985612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C 0.066 3.934 4 N -0.501 5.501 5 C 0.153 3.847 6 C -0.510 4.510 7 H 0.082 0.918 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.862 3.138 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.127 3.873 15 H 0.116 0.884 16 C -0.114 4.114 17 C -0.086 4.086 18 C -0.081 4.081 19 C -0.084 4.084 20 C -0.076 4.076 21 C -0.029 4.029 22 Cl -0.064 7.064 23 C -0.108 4.108 24 C -0.019 4.019 25 Cl -0.071 7.071 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.029 0.971 30 H 0.082 0.918 31 H -0.003 1.003 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 8.630 -14.268 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.145 4.145 3 C -0.062 4.062 4 N -0.222 5.222 5 C 0.027 3.973 6 C -0.548 4.548 7 H 0.100 0.900 8 C -0.128 4.128 9 N -0.536 5.536 10 Si 0.689 3.311 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.019 3.981 15 H 0.133 0.867 16 C -0.152 4.152 17 C -0.123 4.123 18 C -0.082 4.082 19 C -0.086 4.086 20 C -0.096 4.096 21 C -0.056 4.056 22 Cl -0.035 7.035 23 C -0.128 4.128 24 C -0.045 4.045 25 Cl -0.042 7.042 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.015 0.985 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.164 0.836 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.083 8.302 -14.135 16.680 hybrid contribution -1.910 0.986 0.592 2.229 sum -4.993 9.288 -13.543 17.164 Atomic orbital electron populations 1.23733 0.96055 1.01269 1.03520 1.22916 0.95459 0.98928 0.97211 1.21514 0.94587 0.94167 0.95906 1.62415 1.23691 1.32679 1.03442 1.20339 0.94597 0.95719 0.86613 1.21001 0.95580 1.49376 0.88873 0.89982 1.24840 0.96853 0.94845 0.96307 1.69875 1.33849 1.50108 0.99738 0.87052 0.86828 0.79074 0.78119 1.20105 1.21122 1.18922 1.21342 0.93228 0.83556 1.00012 0.86666 1.22406 0.97482 1.01097 0.94209 1.21315 0.96666 0.96907 0.97366 1.20585 0.97298 0.94010 0.96325 1.21476 0.97852 0.97483 0.91822 1.20955 0.94532 0.92632 1.01453 1.20586 0.98879 0.96515 0.89636 1.98371 1.72055 1.79429 1.53617 1.20668 1.00610 1.01121 0.90351 1.20209 1.01684 0.96616 0.86027 1.98351 1.97711 1.87388 1.20798 0.88708 0.89285 0.86867 0.95268 0.90055 0.98513 0.95172 0.92623 0.90418 0.89038 0.90389 0.89368 0.83591 0.84200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.05 14.32 29.02 0.42 -2.63 16 2 C -0.13 -1.99 8.17 -36.03 -0.29 -2.29 16 3 C 0.07 1.06 4.13 -4.98 -0.02 1.04 16 4 N -0.50 -9.42 4.51 -229.66 -1.04 -10.46 16 5 C 0.15 3.46 3.54 -4.97 -0.02 3.44 16 6 C -0.51 -13.52 8.85 -34.44 -0.30 -13.82 16 7 H 0.08 2.36 7.60 -52.49 -0.40 1.96 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.90 -26.49 13.96 55.43 0.77 -25.71 16 10 Si 0.86 20.97 27.57 -169.99 -4.69 16.28 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.26 -6.22 6.40 56.52 0.36 -5.86 16 14 C 0.13 2.17 2.94 -67.83 -0.20 1.97 16 15 H 0.12 2.26 6.81 -51.93 -0.35 1.91 16 16 C -0.11 -1.49 6.17 -25.32 -0.16 -1.65 16 17 C -0.09 -1.03 5.67 -26.85 -0.15 -1.18 16 18 C -0.08 -1.14 5.35 -104.16 -0.56 -1.69 16 19 C -0.08 -1.37 4.02 -104.21 -0.42 -1.79 16 20 C -0.08 -1.32 8.56 -39.50 -0.34 -1.65 16 21 C -0.03 -0.45 6.32 -39.54 -0.25 -0.70 16 22 Cl -0.06 -0.92 28.96 -51.86 -1.50 -2.42 16 23 C -0.11 -1.46 9.61 -39.55 -0.38 -1.84 16 24 C -0.02 -0.25 6.32 -39.46 -0.25 -0.50 16 25 Cl -0.07 -0.82 28.71 -51.86 -1.49 -2.31 16 26 H 0.09 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.09 1.30 7.84 -52.49 -0.41 0.89 16 28 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.03 0.50 6.48 -51.93 -0.34 0.16 16 30 H 0.08 1.14 4.79 -51.93 -0.25 0.89 16 31 H 0.00 -0.06 4.31 -51.93 -0.22 -0.29 16 32 H 0.03 0.71 6.45 -51.93 -0.33 0.38 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 34 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.09 1.16 7.99 -51.93 -0.42 0.74 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.01 5.98 -51.93 -0.31 0.70 16 38 H 0.15 2.82 7.36 -52.48 -0.39 2.43 16 39 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -27.95 338.16 -10.57 -38.53 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.71 Total: 2.35 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -3.02 Total: -21.35 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.26 Total: -36.17 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.69 Total: 16.28 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -2.99 Total: -4.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.95 -10.57 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.748 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds