Wall clock time and date at job start Tue Mar 31 2020 14:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99923 * 2 1 4 4 N 1.46899 * 109.47444 * 124.99979 * 3 2 1 5 5 C 1.46901 * 110.99657 * 300.08387 * 4 3 2 6 6 C 1.50701 * 109.46874 * 170.40142 * 5 4 3 7 7 H 1.07994 * 120.00532 * 355.01935 * 6 5 4 8 8 C 1.37886 * 119.99788 * 175.02070 * 6 5 4 9 9 N 1.31513 * 119.99959 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99931 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46859 * 89.99898 * 10 8 6 12 12 H 1.48497 * 109.46661 * 209.99959 * 10 8 6 13 13 H 1.48501 * 109.47019 * 329.99759 * 10 8 6 14 14 C 1.46896 * 111.00381 * 176.13202 * 4 3 2 15 15 H 1.08998 * 110.27177 * 175.49854 * 14 4 3 16 16 C 1.54347 * 110.38305 * 297.62336 * 14 4 3 17 17 C 1.54344 * 102.39803 * 92.61122 * 16 14 4 18 18 C 1.51380 * 105.17032 * 26.35398 * 17 16 14 19 19 C 1.38249 * 109.75297 * 342.81105 * 18 17 16 20 20 C 1.38440 * 119.86779 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.23883 * 0.02562 * 20 19 18 22 22 Cl 1.73598 * 120.04419 * 179.70361 * 21 20 19 23 23 C 1.38312 * 119.91564 * 359.97438 * 21 20 19 24 24 C 1.38240 * 119.90795 * 0.03163 * 23 21 20 25 25 Cl 1.73600 * 119.89551 * 180.02562 * 24 23 21 26 26 H 1.07995 * 119.99867 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99935 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99935 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47531 * 4.99724 * 3 2 1 30 30 H 1.09005 * 109.47081 * 244.99626 * 3 2 1 31 31 H 1.09001 * 109.47158 * 290.40304 * 5 4 3 32 32 H 1.08998 * 109.47314 * 50.40314 * 5 4 3 33 33 H 0.96993 * 119.99781 * 179.97438 * 9 8 6 34 34 H 1.09008 * 110.82252 * 210.83550 * 16 14 4 35 35 H 1.08997 * 110.82527 * 334.18745 * 16 14 4 36 36 H 1.09000 * 110.30689 * 145.27427 * 17 16 14 37 37 H 1.09000 * 110.30623 * 267.43341 * 17 16 14 38 38 H 1.08004 * 119.88285 * 179.97438 * 20 19 18 39 39 H 1.08006 * 120.04584 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3321 1.1345 5 6 2.2784 1.2007 2.4094 6 6 3.2702 0.9958 3.5255 7 1 4.3207 0.8856 3.3009 8 6 2.8362 0.9490 4.8334 9 7 3.7016 0.7697 5.8073 10 14 1.0191 1.1403 5.2220 11 1 0.3691 -0.1949 5.2194 12 1 0.8622 1.7647 6.5601 13 1 0.3815 2.0032 4.1952 14 6 3.8146 2.5518 1.1144 15 1 4.4452 2.5982 2.0023 16 6 4.6822 2.5961 -0.1614 17 6 3.7930 3.3932 -1.1393 18 6 2.9168 4.2606 -0.2609 19 6 2.9293 3.7770 1.0343 20 6 2.1930 4.4173 2.0163 21 6 1.4449 5.5380 1.7064 22 17 0.5174 6.3323 2.9402 23 6 1.4321 6.0221 0.4108 24 6 2.1668 5.3837 -0.5709 25 17 2.1509 5.9920 -2.1967 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 1.7023 2.1068 2.5970 32 1 1.6046 0.3454 2.3606 33 1 3.3963 0.7371 6.7274 34 1 5.6194 3.1206 0.0253 35 1 4.8711 1.5904 -0.5367 36 1 4.4086 4.0141 -1.7901 37 1 3.1799 2.7143 -1.7321 38 1 2.2023 4.0395 3.0281 39 1 0.8481 6.8971 0.1663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428853627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:25 Heat of formation + Delta-G solvation = 28.861834 kcal Electronic energy + Delta-G solvation = -23698.788318 eV Core-core repulsion = 20271.960179 eV Total energy + Delta-G solvation = -3426.828140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93999 -38.92356 -37.82653 -37.24542 -35.80774 -34.96653 -33.68816 -31.84302 -30.29345 -29.48909 -28.18197 -25.43098 -23.97951 -23.34277 -22.11946 -21.18381 -20.45503 -19.07416 -17.85424 -17.47864 -16.98338 -16.49167 -16.26048 -16.11567 -15.48049 -15.33349 -15.00290 -14.86988 -14.55944 -14.16605 -14.12546 -13.63530 -13.31685 -13.26610 -12.99590 -12.88911 -12.68077 -12.52226 -12.38106 -12.30646 -12.12220 -11.99525 -11.94229 -11.88331 -11.69403 -11.49020 -11.32750 -10.78346 -10.21169 -9.89841 -9.58713 -9.08250 -8.27801 -6.27948 -0.12332 -0.04448 0.72685 1.20150 1.28726 1.31745 1.38394 1.40870 2.28406 2.31137 3.06838 3.22813 3.26997 3.53804 3.84022 3.94512 4.02928 4.11753 4.25629 4.27425 4.30409 4.48870 4.53608 4.66439 4.72840 4.73514 4.88216 4.92464 4.99647 5.02266 5.05544 5.13683 5.24774 5.31517 5.36059 5.47337 5.57082 5.73772 5.79940 6.05770 6.34669 6.64313 6.78710 7.34934 8.88448 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.005883 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.753884 B = 4758.443919 C = 5951.985612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.072 3.928 4 N -0.510 5.510 5 C 0.168 3.832 6 C -0.502 4.502 7 H 0.045 0.955 8 C 0.020 3.980 9 N -0.943 5.943 10 Si 0.921 3.079 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.254 1.254 14 C 0.122 3.878 15 H 0.074 0.926 16 C -0.105 4.105 17 C -0.079 4.079 18 C -0.073 4.073 19 C -0.101 4.101 20 C -0.099 4.099 21 C -0.035 4.035 22 Cl -0.061 7.061 23 C -0.098 4.098 24 C -0.017 4.017 25 Cl -0.045 7.045 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.021 0.979 30 H 0.107 0.893 31 H -0.007 1.007 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 9.638 -17.302 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.167 4.167 3 C -0.055 4.055 4 N -0.232 5.232 5 C 0.041 3.959 6 C -0.541 4.541 7 H 0.064 0.936 8 C -0.178 4.178 9 N -0.585 5.585 10 Si 0.746 3.254 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.178 1.178 14 C 0.014 3.986 15 H 0.092 0.908 16 C -0.143 4.143 17 C -0.115 4.115 18 C -0.074 4.074 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.061 4.061 22 Cl -0.032 7.032 23 C -0.117 4.117 24 C -0.044 4.044 25 Cl -0.016 7.016 26 H 0.131 0.869 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.040 0.960 30 H 0.125 0.875 31 H 0.011 0.989 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.548 9.317 -17.199 20.082 hybrid contribution -1.392 0.720 1.461 2.143 sum -5.940 10.037 -15.738 19.589 Atomic orbital electron populations 1.23927 0.95760 1.02224 1.01577 1.22975 0.96013 0.98733 0.98969 1.21546 0.94216 0.94211 0.95503 1.62310 1.24029 1.34199 1.02626 1.19991 0.93437 0.95017 0.87451 1.21206 0.94818 1.47735 0.90312 0.93627 1.25581 1.00986 0.94933 0.96278 1.70014 1.35971 1.52312 1.00165 0.86100 0.81895 0.79416 0.78021 1.19265 1.21006 1.17760 1.21309 0.93228 0.83579 1.00519 0.90832 1.22384 0.97498 1.02099 0.92273 1.21348 0.96427 0.96849 0.96873 1.20752 0.97093 0.94104 0.95491 1.21341 0.98365 0.97663 0.92978 1.20801 0.96538 0.94249 1.00294 1.20598 0.98855 0.96132 0.90559 1.98366 1.71869 1.79181 1.53779 1.20920 1.00081 1.01364 0.89375 1.20276 1.00818 0.96099 0.87228 1.98365 1.97566 1.86983 1.18705 0.86936 0.89150 0.86819 0.96035 0.87521 0.98948 0.95730 0.92632 0.89188 0.88312 0.87846 0.88035 0.86923 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.33 14.32 67.78 0.97 -4.36 16 2 C -0.15 -4.43 8.17 25.65 0.21 -4.22 16 3 C 0.07 2.21 4.13 85.56 0.35 2.56 16 4 N -0.51 -19.32 4.51 -880.51 -3.97 -23.29 16 5 C 0.17 7.75 3.54 85.56 0.30 8.05 16 6 C -0.50 -27.89 8.85 25.60 0.23 -27.67 16 7 H 0.05 2.81 7.60 -2.91 -0.02 2.78 16 8 C 0.02 1.14 5.47 84.66 0.46 1.61 16 9 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 10 Si 0.92 44.23 27.57 68.60 1.89 46.13 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.25 -11.61 6.40 99.48 0.64 -10.97 16 14 C 0.12 4.24 2.94 44.84 0.13 4.38 16 15 H 0.07 3.11 6.81 -2.39 -0.02 3.10 16 16 C -0.10 -2.58 6.17 31.51 0.19 -2.39 16 17 C -0.08 -1.62 5.67 30.52 0.17 -1.45 16 18 C -0.07 -1.89 5.35 -19.57 -0.10 -1.99 16 19 C -0.10 -3.28 4.02 -19.60 -0.08 -3.36 16 20 C -0.10 -3.49 8.56 22.32 0.19 -3.30 16 21 C -0.03 -1.03 6.32 22.29 0.14 -0.88 16 22 Cl -0.06 -1.72 28.96 -2.72 -0.08 -1.80 16 23 C -0.10 -2.41 9.61 22.29 0.21 -2.20 16 24 C -0.02 -0.41 6.32 22.35 0.14 -0.27 16 25 Cl -0.05 -0.87 28.71 -2.72 -0.08 -0.95 16 26 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 27 H 0.09 2.42 7.84 -2.91 -0.02 2.39 16 28 H 0.11 3.36 8.06 -2.91 -0.02 3.33 16 29 H 0.02 0.70 6.48 -2.39 -0.02 0.69 16 30 H 0.11 2.69 4.79 -2.38 -0.01 2.68 16 31 H -0.01 -0.33 4.31 -2.39 -0.01 -0.35 16 32 H 0.02 1.17 6.45 -2.39 -0.02 1.15 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.10 2.30 7.99 -2.39 -0.02 2.28 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 1.89 5.98 -2.39 -0.01 1.87 16 38 H 0.11 4.64 7.36 -2.91 -0.02 4.62 16 39 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -62.76 338.16 2.59 -60.17 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.00 Total: 13.05 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 3.53 Total: -35.49 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -3.67 Total: -81.11 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.89 Total: 46.13 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.16 Total: -2.75 kcal Total: -62.76 2.59 -60.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428853627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.028 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds