Wall clock time and date at job start Tue Mar 31 2020 14:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38241 * 119.99322 * 2 1 4 4 C 1.38310 * 119.99015 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 120.00942 * 179.97438 * 4 3 2 6 6 C 1.38343 * 119.97875 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.99276 * 359.74639 * 6 4 3 8 8 C 1.38221 * 119.99906 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.98618 * 0.02562 * 8 2 1 10 10 N 1.46895 * 109.47030 * 79.99675 * 9 8 2 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47454 * 300.00316 * 12 11 10 14 14 C 1.52997 * 109.46978 * 60.00394 * 12 11 10 15 15 C 1.50696 * 109.46999 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00355 * 180.02562 * 15 12 11 18 18 N 1.31520 * 119.99521 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00556 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46997 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47364 * 120.00013 * 19 17 15 22 22 H 1.48497 * 109.46870 * 240.00080 * 19 17 15 23 23 H 1.08998 * 109.47769 * 270.02583 * 1 2 3 24 24 H 1.09001 * 109.47685 * 30.02566 * 1 2 3 25 25 H 1.09002 * 109.46968 * 150.02461 * 1 2 3 26 26 H 1.08002 * 120.00610 * 359.95152 * 3 2 1 27 27 H 1.08002 * 120.00872 * 179.97438 * 6 4 3 28 28 H 1.07990 * 120.00129 * 180.27987 * 7 6 4 29 29 H 1.08996 * 109.46908 * 319.99493 * 9 8 2 30 30 H 1.09002 * 109.46622 * 199.99666 * 9 8 2 31 31 H 1.00899 * 111.00672 * 56.04735 * 10 9 8 32 32 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 33 33 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 34 34 H 1.09002 * 109.47067 * 59.99861 * 13 12 11 35 35 H 1.09000 * 109.47312 * 179.97438 * 13 12 11 36 36 H 1.09004 * 109.46930 * 299.99944 * 13 12 11 37 37 H 1.08998 * 109.47624 * 59.99457 * 14 12 11 38 38 H 1.09000 * 109.47140 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47045 * 299.99833 * 14 12 11 40 40 H 0.96999 * 120.00022 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5269 2.8347 -0.0002 6 6 4.2723 -0.0012 0.0016 7 6 3.5806 -1.1976 0.0074 8 6 2.1980 -1.1970 0.0005 9 6 1.4441 -2.5020 0.0005 10 7 0.9914 -2.8059 -1.3635 11 6 0.2515 -4.0744 -1.4021 12 6 -0.2032 -4.3561 -2.8356 13 6 -1.1107 -3.2214 -3.3151 14 6 1.0202 -4.4513 -3.7493 15 6 -0.9617 -5.6576 -2.8754 16 1 -1.1055 -6.2268 -1.9689 17 6 -1.4722 -6.1219 -4.0690 18 7 -1.2967 -5.4291 -5.1731 19 14 -2.4131 -7.7349 -4.1183 20 1 -2.4704 -8.3164 -2.7530 21 1 -3.7924 -7.4887 -4.6103 22 1 -1.7237 -8.6823 -5.0307 23 1 -0.3634 0.0005 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6580 2.1326 -0.0008 27 1 5.3523 -0.0018 0.0016 28 1 4.1200 -2.1331 0.0128 29 1 0.5806 -2.4226 0.6608 30 1 2.0985 -3.2995 0.3524 31 1 1.7681 -2.8210 -2.0074 32 1 0.8978 -4.8827 -1.0602 33 1 -0.6204 -4.0064 -0.7515 34 1 -0.5617 -2.2802 -3.2864 35 1 -1.4343 -3.4219 -4.3365 36 1 -1.9824 -3.1536 -2.6642 37 1 1.6668 -5.2596 -3.4078 38 1 0.6963 -4.6525 -4.7705 39 1 1.5693 -3.5102 -3.7206 40 1 -1.6555 -5.7558 -6.0129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459725491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:39 Heat of formation + Delta-G solvation = 12.493134 kcal Electronic energy + Delta-G solvation = -19636.426974 eV Core-core repulsion = 16689.585278 eV Total energy + Delta-G solvation = -2946.841696 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73265 -36.93271 -34.50135 -32.86946 -32.08663 -30.91110 -29.35604 -27.15776 -25.57948 -25.37795 -25.11775 -23.05364 -22.13783 -20.49369 -18.48739 -16.58931 -16.04032 -15.84797 -15.14935 -14.78765 -14.42621 -14.31420 -13.55776 -13.43336 -13.25999 -12.63686 -12.50051 -12.43199 -12.36651 -11.99066 -11.89763 -11.26106 -11.11769 -11.04158 -10.92589 -10.73841 -10.62502 -10.54687 -10.41809 -10.19866 -10.07721 -9.40858 -9.14080 -8.90429 -8.65661 -8.53981 -8.30864 -7.77529 -5.92948 -4.03491 1.01457 1.24166 1.50503 3.29016 3.37641 3.40672 3.49953 4.42420 4.63847 4.74130 4.80540 5.04050 5.16771 5.24624 5.32720 5.44696 5.61440 5.69781 5.76503 5.83208 5.93755 6.11052 6.15860 6.27565 6.34344 6.39947 6.63753 6.69258 6.78778 6.86779 7.05243 7.14541 7.35813 7.43581 7.67062 7.74222 7.80751 7.90225 8.19099 8.32827 8.53785 8.98260 9.61806 11.07538 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.035733 B = 0.002439 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.406829 B =11477.243143 C =11518.626539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.051 4.051 3 C -0.097 4.097 4 C -0.089 4.089 5 Br -0.063 7.063 6 C -0.101 4.101 7 C -0.107 4.107 8 C -0.060 4.060 9 C 0.092 3.908 10 N -0.679 5.679 11 C 0.075 3.925 12 C 0.070 3.930 13 C -0.119 4.119 14 C -0.133 4.133 15 C -0.507 4.507 16 H 0.052 0.948 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.888 3.112 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.286 1.286 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.340 0.660 32 H 0.014 0.986 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.083 0.917 39 H 0.011 0.989 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.905 15.300 11.576 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.052 4.052 3 C -0.117 4.117 4 C -0.169 4.169 5 Br 0.022 6.978 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.061 4.061 9 C -0.037 4.037 10 N -0.311 5.311 11 C -0.053 4.053 12 C 0.069 3.931 13 C -0.177 4.177 14 C -0.190 4.190 15 C -0.545 4.545 16 H 0.070 0.930 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.716 3.284 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.212 1.212 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.159 0.841 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.633 16.272 11.433 22.551 hybrid contribution 0.132 -1.891 0.040 1.896 sum 10.765 14.381 11.473 21.315 Atomic orbital electron populations 1.20942 0.90138 1.04775 1.02154 1.19799 0.96791 0.91485 0.97174 1.20997 0.91844 0.98611 1.00202 1.21691 0.94692 0.91317 1.09160 1.96675 1.75406 1.27862 1.97833 1.20991 0.99958 0.90873 1.00220 1.21092 0.93750 0.97713 1.00079 1.19995 0.93229 0.95344 0.97560 1.20924 0.97691 0.91659 0.93471 1.60653 1.29263 1.36614 1.04556 1.22194 0.95700 0.86382 1.01071 1.18085 0.92690 0.94361 0.87955 1.21639 0.97637 0.95826 1.02562 1.21838 0.96963 0.95828 1.04417 1.21143 1.34087 1.05352 0.93964 0.92957 1.24887 0.96049 0.96900 0.95750 1.69846 1.45849 1.37815 0.98781 0.86609 0.79769 0.84074 0.77932 1.19958 1.21103 1.21184 0.91526 0.91739 0.88417 0.85271 0.85363 0.85361 0.90200 0.94956 0.84103 0.96763 0.92432 0.96084 0.90779 0.96310 0.96256 0.89815 0.97052 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.26 36.00 0.33 -1.12 16 2 C -0.05 -0.64 5.88 -104.63 -0.62 -1.25 16 3 C -0.10 -1.14 9.44 -39.55 -0.37 -1.51 16 4 C -0.09 -1.03 6.22 -39.52 -0.25 -1.28 16 5 Br -0.06 -0.65 33.70 -68.01 -2.29 -2.94 16 6 C -0.10 -1.12 9.79 -39.56 -0.39 -1.51 16 7 C -0.11 -1.24 9.67 -39.59 -0.38 -1.63 16 8 C -0.06 -0.77 5.39 -104.62 -0.56 -1.34 16 9 C 0.09 1.26 4.94 -4.98 -0.02 1.23 16 10 N -0.68 -11.30 5.04 -115.06 -0.58 -11.88 16 11 C 0.07 1.48 4.59 -3.82 -0.02 1.46 16 12 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 13 C -0.12 -2.82 8.09 37.16 0.30 -2.52 16 14 C -0.13 -3.07 7.92 37.16 0.29 -2.78 16 15 C -0.51 -13.37 8.01 -34.44 -0.28 -13.64 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.88 -24.22 9.35 55.43 0.52 -23.70 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.10 1.35 6.34 -51.93 -0.33 1.03 16 26 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.13 1.29 8.03 -52.49 -0.42 0.87 16 29 H 0.08 1.07 7.28 -51.93 -0.38 0.69 16 30 H 0.03 0.43 8.00 -51.93 -0.42 0.01 16 31 H 0.34 5.80 6.76 -39.29 -0.27 5.53 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 35 H 0.07 1.95 6.07 -51.93 -0.32 1.63 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 2.17 6.07 -51.93 -0.31 1.86 16 39 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -26.57 337.58 -10.52 -37.09 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.10 Total: 3.19 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.14 Total: -22.69 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.06 Total: -35.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.29 Total: -2.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.57 -10.52 -37.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459725491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.587 kcal (2) G-P(sol) polarization free energy of solvation -26.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds