Wall clock time and date at job start Tue Mar 31 2020 14:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38241 * 119.99322 * 2 1 4 4 C 1.38310 * 119.99015 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 120.00942 * 179.97438 * 4 3 2 6 6 C 1.38343 * 119.97875 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.99276 * 359.74639 * 6 4 3 8 8 C 1.38221 * 119.99906 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.98618 * 0.02562 * 8 2 1 10 10 N 1.46895 * 109.47030 * 79.99675 * 9 8 2 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47454 * 300.00316 * 12 11 10 14 14 C 1.52997 * 109.46978 * 60.00394 * 12 11 10 15 15 C 1.50696 * 109.46999 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00355 * 180.02562 * 15 12 11 18 18 N 1.31520 * 119.99521 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00556 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46997 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47364 * 120.00013 * 19 17 15 22 22 H 1.48497 * 109.46870 * 240.00080 * 19 17 15 23 23 H 1.08998 * 109.47769 * 270.02583 * 1 2 3 24 24 H 1.09001 * 109.47685 * 30.02566 * 1 2 3 25 25 H 1.09002 * 109.46968 * 150.02461 * 1 2 3 26 26 H 1.08002 * 120.00610 * 359.95152 * 3 2 1 27 27 H 1.08002 * 120.00872 * 179.97438 * 6 4 3 28 28 H 1.07990 * 120.00129 * 180.27987 * 7 6 4 29 29 H 1.08996 * 109.46908 * 319.99493 * 9 8 2 30 30 H 1.09002 * 109.46622 * 199.99666 * 9 8 2 31 31 H 1.00899 * 111.00672 * 56.04735 * 10 9 8 32 32 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 33 33 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 34 34 H 1.09002 * 109.47067 * 59.99861 * 13 12 11 35 35 H 1.09000 * 109.47312 * 179.97438 * 13 12 11 36 36 H 1.09004 * 109.46930 * 299.99944 * 13 12 11 37 37 H 1.08998 * 109.47624 * 59.99457 * 14 12 11 38 38 H 1.09000 * 109.47140 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.47045 * 299.99833 * 14 12 11 40 40 H 0.96999 * 120.00022 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5269 2.8347 -0.0002 6 6 4.2723 -0.0012 0.0016 7 6 3.5806 -1.1976 0.0074 8 6 2.1980 -1.1970 0.0005 9 6 1.4441 -2.5020 0.0005 10 7 0.9914 -2.8059 -1.3635 11 6 0.2515 -4.0744 -1.4021 12 6 -0.2032 -4.3561 -2.8356 13 6 -1.1107 -3.2214 -3.3151 14 6 1.0202 -4.4513 -3.7493 15 6 -0.9617 -5.6576 -2.8754 16 1 -1.1055 -6.2268 -1.9689 17 6 -1.4722 -6.1219 -4.0690 18 7 -1.2967 -5.4291 -5.1731 19 14 -2.4131 -7.7349 -4.1183 20 1 -2.4704 -8.3164 -2.7530 21 1 -3.7924 -7.4887 -4.6103 22 1 -1.7237 -8.6823 -5.0307 23 1 -0.3634 0.0005 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6580 2.1326 -0.0008 27 1 5.3523 -0.0018 0.0016 28 1 4.1200 -2.1331 0.0128 29 1 0.5806 -2.4226 0.6608 30 1 2.0985 -3.2995 0.3524 31 1 1.7681 -2.8210 -2.0074 32 1 0.8978 -4.8827 -1.0602 33 1 -0.6204 -4.0064 -0.7515 34 1 -0.5617 -2.2802 -3.2864 35 1 -1.4343 -3.4219 -4.3365 36 1 -1.9824 -3.1536 -2.6642 37 1 1.6668 -5.2596 -3.4078 38 1 0.6963 -4.6525 -4.7705 39 1 1.5693 -3.5102 -3.7206 40 1 -1.6555 -5.7558 -6.0129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459725491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:38 Heat of formation + Delta-G solvation = 0.744404 kcal Electronic energy + Delta-G solvation = -19636.936438 eV Core-core repulsion = 16689.585278 eV Total energy + Delta-G solvation = -2947.351159 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66162 -38.54015 -35.90703 -34.03314 -33.23552 -32.38378 -30.44541 -28.11185 -27.47721 -27.22901 -26.52819 -24.46848 -23.06090 -21.44265 -20.31390 -17.97947 -17.45541 -16.99519 -16.68524 -15.98047 -15.77554 -15.60546 -14.98231 -14.63789 -14.18783 -14.07950 -13.95331 -13.84057 -13.36342 -13.32575 -13.08608 -12.95955 -12.86487 -12.51457 -12.46258 -12.15093 -12.07456 -11.98914 -11.83222 -11.59718 -11.28174 -11.24676 -10.92017 -10.56732 -10.32981 -9.78854 -9.49336 -9.12421 -7.95219 -6.11910 0.09653 0.35926 0.64464 1.41740 1.45572 1.54373 2.47065 2.58380 3.27197 3.55668 3.78344 3.91082 3.97350 4.24502 4.32572 4.53705 4.55802 4.63628 4.70776 4.74320 4.87027 4.90848 4.94510 5.00043 5.06412 5.19764 5.23463 5.26707 5.31836 5.44433 5.46782 5.57392 5.69617 5.72552 5.80115 5.88793 6.18596 6.26681 6.36951 6.51025 6.63802 6.98650 7.55958 9.02890 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.035733 B = 0.002439 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.406829 B =11477.243143 C =11518.626539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.061 4.061 3 C -0.103 4.103 4 C -0.097 4.097 5 Br -0.052 7.052 6 C -0.103 4.103 7 C -0.108 4.108 8 C -0.074 4.074 9 C 0.097 3.903 10 N -0.678 5.678 11 C 0.090 3.910 12 C 0.061 3.939 13 C -0.104 4.104 14 C -0.121 4.121 15 C -0.524 4.524 16 H 0.046 0.954 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.141 0.859 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.338 0.662 32 H 0.011 0.989 33 H 0.053 0.947 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.012 0.988 37 H 0.017 0.983 38 H 0.054 0.946 39 H 0.032 0.968 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.745 15.872 12.586 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.062 4.062 3 C -0.122 4.122 4 C -0.176 4.176 5 Br 0.033 6.967 6 C -0.123 4.123 7 C -0.127 4.127 8 C -0.075 4.075 9 C -0.031 4.031 10 N -0.310 5.310 11 C -0.038 4.038 12 C 0.060 3.940 13 C -0.162 4.162 14 C -0.179 4.179 15 C -0.563 4.563 16 H 0.064 0.936 17 C -0.177 4.177 18 N -0.543 5.543 19 Si 0.770 3.230 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.159 0.841 27 H 0.164 0.836 28 H 0.161 0.839 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.157 0.843 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.479 16.852 12.456 23.893 hybrid contribution -0.085 -1.991 -0.252 2.009 sum 11.394 14.861 12.204 22.352 Atomic orbital electron populations 1.20892 0.89912 1.04004 1.02821 1.19928 0.97116 0.91769 0.97406 1.21148 0.92137 0.98862 1.00085 1.21889 0.94905 0.92079 1.08749 1.96686 1.75069 1.27126 1.97780 1.21227 1.00915 0.90546 0.99586 1.21283 0.93398 0.98624 0.99429 1.19947 0.93749 0.94798 0.98965 1.20889 0.98099 0.92565 0.91589 1.60549 1.29399 1.34556 1.06454 1.21832 0.95883 0.87780 0.98346 1.18127 0.92488 0.93067 0.90279 1.21456 0.97599 0.96625 1.00533 1.21667 0.96970 0.96825 1.02451 1.21484 1.34474 1.06606 0.93708 0.93597 1.25529 0.96983 0.99572 0.95643 1.69982 1.46434 1.38901 0.99008 0.85747 0.78502 0.80889 0.77882 1.19552 1.21044 1.21053 0.90199 0.90984 0.90591 0.84135 0.83640 0.83915 0.90003 0.94106 0.84268 0.97077 0.92878 0.94727 0.93615 0.96896 0.96422 0.92760 0.94912 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.26 71.23 0.66 -1.99 16 2 C -0.06 -1.42 5.88 -19.87 -0.12 -1.54 16 3 C -0.10 -2.23 9.44 22.29 0.21 -2.02 16 4 C -0.10 -2.05 6.22 22.31 0.14 -1.91 16 5 Br -0.05 -0.97 33.70 -20.37 -0.69 -1.66 16 6 C -0.10 -2.07 9.79 22.29 0.22 -1.85 16 7 C -0.11 -2.28 9.67 22.27 0.22 -2.06 16 8 C -0.07 -1.76 5.39 -19.86 -0.11 -1.86 16 9 C 0.10 2.51 4.94 85.56 0.42 2.93 16 10 N -0.68 -21.71 5.04 -517.93 -2.61 -24.32 16 11 C 0.09 3.50 4.59 86.30 0.40 3.90 16 12 C 0.06 2.84 0.57 -52.93 -0.03 2.81 16 13 C -0.10 -4.95 8.09 71.98 0.58 -4.36 16 14 C -0.12 -5.58 7.92 71.98 0.57 -5.01 16 15 C -0.52 -27.70 8.01 25.60 0.21 -27.49 16 16 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 17 C 0.02 1.16 5.15 84.65 0.44 1.59 16 18 N -0.90 -50.10 9.35 21.45 0.20 -49.89 16 19 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 25 H 0.08 2.04 6.34 -2.39 -0.02 2.02 16 26 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 27 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.14 2.52 8.03 -2.92 -0.02 2.50 16 29 H 0.08 2.08 7.28 -2.39 -0.02 2.06 16 30 H 0.04 1.00 8.00 -2.39 -0.02 0.98 16 31 H 0.34 11.01 6.76 -89.69 -0.61 10.40 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.03 1.49 7.60 -2.39 -0.02 1.48 16 35 H 0.04 2.42 6.07 -2.39 -0.01 2.41 16 36 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 2.83 6.07 -2.39 -0.01 2.81 16 39 H 0.03 1.32 6.57 -2.39 -0.02 1.30 16 40 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -55.60 337.58 3.15 -52.45 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.42 Total: 17.36 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 3.80 Total: -38.86 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -2.41 Total: -74.21 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -0.69 Total: -1.66 kcal Total: -55.60 3.15 -52.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459725491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.197 kcal (2) G-P(sol) polarization free energy of solvation -55.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds