Wall clock time and date at job start Tue Mar 31 2020 13:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47218 * 269.99704 * 3 2 1 5 5 H 1.48501 * 109.46993 * 30.00105 * 3 2 1 6 6 H 1.48497 * 109.46986 * 149.99890 * 3 2 1 7 7 C 1.37877 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00165 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00219 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47219 * 176.14539 * 9 7 2 11 11 C 1.46825 * 110.99967 * 295.66677 * 10 9 7 12 12 C 1.53303 * 109.39844 * 189.74892 * 11 10 9 13 13 C 1.51433 * 108.24399 * 306.21327 * 12 11 10 14 14 C 1.32578 * 121.10808 * 229.00524 * 13 12 11 15 15 C 1.47790 * 119.99832 * 187.24463 * 14 13 12 16 16 C 1.39526 * 120.14673 * 35.60150 * 15 14 13 17 17 C 1.38065 * 119.85989 * 179.97438 * 16 15 14 18 18 Cl 1.73603 * 119.93036 * 180.02562 * 17 16 15 19 19 C 1.38484 * 120.14122 * 0.02562 * 17 16 15 20 20 C 1.38273 * 120.28927 * 0.02562 * 19 17 16 21 21 C 1.38129 * 120.14213 * 0.23621 * 20 19 17 22 22 Cl 1.73603 * 120.07320 * 179.74374 * 21 20 19 23 23 C 1.51427 * 117.77876 * 49.27477 * 13 12 11 24 24 C 1.46822 * 110.99839 * 60.35662 * 10 9 7 25 25 H 0.96995 * 119.99897 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46963 * 56.14676 * 9 7 2 27 27 H 1.09000 * 109.46912 * 296.15010 * 9 7 2 28 28 H 1.09005 * 109.48170 * 69.77612 * 11 10 9 29 29 H 1.09001 * 109.48619 * 309.73433 * 11 10 9 30 30 H 1.08995 * 109.70721 * 186.51970 * 12 11 10 31 31 H 1.08997 * 109.70553 * 65.89802 * 12 11 10 32 32 H 1.08008 * 120.00124 * 7.23575 * 14 13 12 33 33 H 1.08004 * 120.07355 * 359.95816 * 16 15 14 34 34 H 1.08004 * 119.85463 * 180.02562 * 19 17 16 35 35 H 1.08004 * 119.93402 * 179.97438 * 20 19 17 36 36 H 1.08997 * 109.71040 * 70.41128 * 23 13 12 37 37 H 1.09002 * 109.70828 * 191.03319 * 23 13 12 38 38 H 1.09001 * 109.48483 * 290.22282 * 24 10 9 39 39 H 1.08993 * 109.48753 * 50.25179 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5759 0.0924 11 6 3.6164 -3.1862 1.3712 12 6 4.3432 -4.5260 1.5352 13 6 4.0642 -5.3698 0.3091 14 6 3.6628 -6.6285 0.4208 15 6 3.5516 -7.4781 -0.7834 16 6 4.4657 -7.3364 -1.8279 17 6 4.3566 -8.1336 -2.9498 18 17 5.4934 -7.9592 -4.2502 19 6 3.3422 -9.0720 -3.0400 20 6 2.4324 -9.2168 -2.0089 21 6 2.5272 -8.4218 -0.8834 22 17 1.3800 -8.6006 0.4072 23 6 4.2649 -4.7301 -1.0486 24 6 3.5379 -3.3757 -1.0484 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6221 0.8540 27 1 3.8752 -0.7405 -0.9220 28 1 2.5392 -3.3528 1.3849 29 1 3.8918 -2.5205 2.1892 30 1 3.9754 -5.0371 2.4248 31 1 5.4155 -4.3536 1.6265 32 1 3.4172 -7.0329 1.3917 33 1 5.2569 -6.6044 -1.7591 34 1 3.2614 -9.6935 -3.9196 35 1 1.6433 -9.9503 -2.0855 36 1 5.3290 -4.5793 -1.2302 37 1 3.8467 -5.3728 -1.8233 38 1 2.4630 -3.5370 -0.9666 39 1 3.7565 -2.8467 -1.9759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000476982368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:39 Heat of formation + Delta-G solvation = 26.437076 kcal Electronic energy + Delta-G solvation = -22519.981097 eV Core-core repulsion = 19093.047811 eV Total energy + Delta-G solvation = -3426.933285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.070 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.94669 -38.25963 -36.93612 -36.36245 -34.94651 -32.56925 -31.38799 -30.89107 -30.29783 -28.28362 -26.05477 -23.57264 -23.19675 -22.22787 -21.71118 -20.09782 -18.38513 -17.14557 -16.55919 -16.15700 -16.08272 -15.07607 -14.59014 -14.42204 -14.36595 -14.04518 -13.90104 -13.74534 -13.19739 -12.70403 -12.59376 -12.43484 -12.35686 -12.00747 -11.95169 -11.93119 -11.23182 -11.21498 -11.09045 -11.05559 -10.92711 -10.82106 -10.39736 -10.15788 -10.03066 -9.90569 -9.71394 -9.51037 -8.87022 -8.62147 -8.16220 -7.24584 -6.12579 -4.13027 0.61479 0.84655 1.78888 2.03661 2.31425 3.25925 3.33633 3.34201 3.36658 4.37286 4.41512 4.47229 4.78659 4.88295 4.92373 5.02772 5.09721 5.20673 5.29798 5.53686 5.62092 5.62893 5.73018 5.82410 5.86343 5.93445 5.95841 6.03113 6.11507 6.30397 6.33843 6.48648 6.62292 6.69992 6.71934 6.93599 6.94682 7.04138 7.53300 8.00844 8.06853 8.42079 8.89846 9.49991 11.00363 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003381 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.265070 B = 8280.004314 C = 9109.222705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.153 3.847 10 N -0.536 5.536 11 C 0.066 3.934 12 C -0.085 4.085 13 C -0.055 4.055 14 C -0.169 4.169 15 C -0.008 4.008 16 C -0.098 4.098 17 C -0.031 4.031 18 Cl -0.065 7.065 19 C -0.110 4.110 20 C -0.098 4.098 21 C -0.031 4.031 22 Cl -0.057 7.057 23 C -0.101 4.101 24 C 0.068 3.932 25 H 0.263 0.737 26 H 0.031 0.969 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 -19.403 -3.238 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.027 3.973 10 N -0.260 5.260 11 C -0.063 4.063 12 C -0.123 4.123 13 C -0.055 4.055 14 C -0.186 4.186 15 C -0.009 4.009 16 C -0.117 4.117 17 C -0.057 4.057 18 Cl -0.036 7.036 19 C -0.128 4.128 20 C -0.117 4.117 21 C -0.058 4.058 22 Cl -0.028 7.028 23 C -0.138 4.138 24 C -0.061 4.061 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.464 -19.255 -3.253 21.700 hybrid contribution -0.784 0.916 -0.014 1.206 sum 8.680 -18.339 -3.268 20.551 Atomic orbital electron populations 1.69928 1.06386 1.27009 1.50337 1.24975 0.94680 0.99214 0.94144 0.86809 0.80419 0.83591 0.78665 1.20178 1.21311 1.18774 1.21706 0.90677 0.94693 1.52025 0.90782 1.20206 0.94631 0.85527 0.96957 1.62217 1.58987 1.03736 1.01020 1.21893 0.98112 0.93301 0.92991 1.21004 1.01441 0.95616 0.94205 1.22555 0.92579 0.93191 0.97214 1.21170 1.07678 0.93940 0.95857 1.18798 0.92766 0.94661 0.94698 1.21406 1.00025 0.98878 0.91386 1.20885 0.94307 0.99325 0.91216 1.98383 1.59874 1.97087 1.48301 1.20970 0.93946 0.98397 0.99529 1.20913 0.99645 0.99314 0.91820 1.21142 0.93607 0.99377 0.91704 1.98381 1.58461 1.96853 1.49101 1.21514 1.01421 0.97145 0.93701 1.21965 0.97638 0.91644 0.94847 0.92672 0.95145 0.95706 0.93734 0.91227 0.91297 0.89940 0.85557 0.83297 0.84266 0.84130 0.90162 0.90611 0.93700 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.16 27.55 -169.99 -4.68 16.47 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.08 6.43 56.52 0.36 -5.71 16 7 C -0.55 -15.15 8.37 -34.44 -0.29 -15.44 16 8 H 0.07 2.23 6.17 -52.49 -0.32 1.90 16 9 C 0.15 3.60 4.17 -4.97 -0.02 3.58 16 10 N -0.54 -10.73 4.77 -235.53 -1.12 -11.86 16 11 C 0.07 1.21 5.08 -3.71 -0.02 1.19 16 12 C -0.09 -1.22 6.21 -27.37 -0.17 -1.39 16 13 C -0.06 -0.78 5.33 -100.54 -0.54 -1.32 16 14 C -0.17 -2.21 8.70 -37.58 -0.33 -2.54 16 15 C -0.01 -0.10 5.27 -104.99 -0.55 -0.65 16 16 C -0.10 -1.13 7.14 -39.16 -0.28 -1.41 16 17 C -0.03 -0.32 6.31 -39.55 -0.25 -0.57 16 18 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 19 C -0.11 -1.03 9.82 -39.48 -0.39 -1.41 16 20 C -0.10 -0.96 9.82 -39.61 -0.39 -1.35 16 21 C -0.03 -0.37 6.35 -39.10 -0.25 -0.62 16 22 Cl -0.06 -0.67 27.79 -51.86 -1.44 -2.11 16 23 C -0.10 -1.48 4.43 -27.15 -0.12 -1.60 16 24 C 0.07 1.27 5.02 -3.49 -0.02 1.25 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.03 0.72 6.84 -51.93 -0.36 0.37 16 27 H 0.02 0.59 7.74 -51.93 -0.40 0.18 16 28 H 0.04 0.94 7.10 -51.93 -0.37 0.57 16 29 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 30 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.13 1.57 7.58 -52.48 -0.40 1.17 16 33 H 0.15 1.64 6.01 -52.48 -0.32 1.33 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.08 1.09 7.88 -51.93 -0.41 0.68 16 37 H 0.08 1.06 5.04 -51.93 -0.26 0.80 16 38 H 0.04 0.97 6.74 -51.93 -0.35 0.62 16 39 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -29.38 338.83 -11.44 -40.82 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.87 Total: 0.48 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.70 Total: -20.31 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.35 Total: -38.30 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.68 Total: 16.47 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -2.94 Total: -4.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.38 -11.44 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000476982368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.257 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds