Wall clock time and date at job start Tue Mar 31 2020 13:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47218 * 269.99704 * 3 2 1 5 5 H 1.48501 * 109.46993 * 30.00105 * 3 2 1 6 6 H 1.48497 * 109.46986 * 149.99890 * 3 2 1 7 7 C 1.37877 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00165 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00219 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47219 * 176.14539 * 9 7 2 11 11 C 1.46825 * 110.99967 * 295.66677 * 10 9 7 12 12 C 1.53303 * 109.39844 * 189.74892 * 11 10 9 13 13 C 1.51433 * 108.24399 * 306.21327 * 12 11 10 14 14 C 1.32578 * 121.10808 * 229.00524 * 13 12 11 15 15 C 1.47790 * 119.99832 * 187.24463 * 14 13 12 16 16 C 1.39526 * 120.14673 * 35.60150 * 15 14 13 17 17 C 1.38065 * 119.85989 * 179.97438 * 16 15 14 18 18 Cl 1.73603 * 119.93036 * 180.02562 * 17 16 15 19 19 C 1.38484 * 120.14122 * 0.02562 * 17 16 15 20 20 C 1.38273 * 120.28927 * 0.02562 * 19 17 16 21 21 C 1.38129 * 120.14213 * 0.23621 * 20 19 17 22 22 Cl 1.73603 * 120.07320 * 179.74374 * 21 20 19 23 23 C 1.51427 * 117.77876 * 49.27477 * 13 12 11 24 24 C 1.46822 * 110.99839 * 60.35662 * 10 9 7 25 25 H 0.96995 * 119.99897 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46963 * 56.14676 * 9 7 2 27 27 H 1.09000 * 109.46912 * 296.15010 * 9 7 2 28 28 H 1.09005 * 109.48170 * 69.77612 * 11 10 9 29 29 H 1.09001 * 109.48619 * 309.73433 * 11 10 9 30 30 H 1.08995 * 109.70721 * 186.51970 * 12 11 10 31 31 H 1.08997 * 109.70553 * 65.89802 * 12 11 10 32 32 H 1.08008 * 120.00124 * 7.23575 * 14 13 12 33 33 H 1.08004 * 120.07355 * 359.95816 * 16 15 14 34 34 H 1.08004 * 119.85463 * 180.02562 * 19 17 16 35 35 H 1.08004 * 119.93402 * 179.97438 * 20 19 17 36 36 H 1.08997 * 109.71040 * 70.41128 * 23 13 12 37 37 H 1.09002 * 109.70828 * 191.03319 * 23 13 12 38 38 H 1.09001 * 109.48483 * 290.22282 * 24 10 9 39 39 H 1.08993 * 109.48753 * 50.25179 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5759 0.0924 11 6 3.6164 -3.1862 1.3712 12 6 4.3432 -4.5260 1.5352 13 6 4.0642 -5.3698 0.3091 14 6 3.6628 -6.6285 0.4208 15 6 3.5516 -7.4781 -0.7834 16 6 4.4657 -7.3364 -1.8279 17 6 4.3566 -8.1336 -2.9498 18 17 5.4934 -7.9592 -4.2502 19 6 3.3422 -9.0720 -3.0400 20 6 2.4324 -9.2168 -2.0089 21 6 2.5272 -8.4218 -0.8834 22 17 1.3800 -8.6006 0.4072 23 6 4.2649 -4.7301 -1.0486 24 6 3.5379 -3.3757 -1.0484 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6221 0.8540 27 1 3.8752 -0.7405 -0.9220 28 1 2.5392 -3.3528 1.3849 29 1 3.8918 -2.5205 2.1892 30 1 3.9754 -5.0371 2.4248 31 1 5.4155 -4.3536 1.6265 32 1 3.4172 -7.0329 1.3917 33 1 5.2569 -6.6044 -1.7591 34 1 3.2614 -9.6935 -3.9196 35 1 1.6433 -9.9503 -2.0855 36 1 5.3290 -4.5793 -1.2302 37 1 3.8467 -5.3728 -1.8233 38 1 2.4630 -3.5370 -0.9666 39 1 3.7565 -2.8467 -1.9759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000476982368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:38 Heat of formation + Delta-G solvation = 10.800987 kcal Electronic energy + Delta-G solvation = -22520.659128 eV Core-core repulsion = 19093.047811 eV Total energy + Delta-G solvation = -3427.611317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.070 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88996 -39.59290 -37.78080 -37.25879 -36.27262 -34.51521 -32.64116 -31.97274 -31.43050 -29.77663 -27.58699 -24.86007 -24.48220 -23.37333 -23.00523 -21.58843 -19.67959 -18.80965 -17.76549 -17.20642 -17.02650 -16.50314 -16.00455 -15.96294 -15.53078 -15.25070 -15.19408 -14.90226 -14.50961 -14.25368 -13.85728 -13.61392 -13.44978 -13.39953 -13.11071 -13.04188 -12.92434 -12.68359 -12.24065 -12.18317 -12.01535 -11.95969 -11.94148 -11.81258 -11.74831 -11.37318 -11.24255 -10.80332 -10.67861 -9.73928 -9.21022 -8.94996 -8.32172 -6.37976 -0.26946 0.01067 0.95460 1.16352 1.31887 1.35889 1.37111 1.48888 2.33411 2.47310 3.03008 3.30558 3.48790 3.66937 3.83038 3.90715 4.05375 4.17074 4.30536 4.38751 4.44356 4.54083 4.61896 4.67154 4.71555 4.78409 4.90434 4.97221 5.01158 5.05892 5.07007 5.11442 5.14340 5.17795 5.26538 5.46949 5.48384 5.62500 5.82348 6.09694 6.34328 6.42232 6.69242 7.29445 8.84350 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003381 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.265070 B = 8280.004314 C = 9109.222705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.550 4.550 8 H 0.030 0.970 9 C 0.158 3.842 10 N -0.527 5.527 11 C 0.066 3.934 12 C -0.073 4.073 13 C -0.081 4.081 14 C -0.150 4.150 15 C -0.031 4.031 16 C -0.102 4.102 17 C -0.037 4.037 18 Cl -0.059 7.059 19 C -0.100 4.100 20 C -0.096 4.096 21 C -0.043 4.043 22 Cl -0.064 7.064 23 C -0.085 4.085 24 C 0.069 3.931 25 H 0.266 0.734 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.005 0.995 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.152 0.848 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.003 0.997 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.262 -20.346 -3.831 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.589 4.589 8 H 0.048 0.952 9 C 0.031 3.969 10 N -0.250 5.250 11 C -0.063 4.063 12 C -0.110 4.110 13 C -0.082 4.082 14 C -0.168 4.168 15 C -0.032 4.032 16 C -0.121 4.121 17 C -0.064 4.064 18 Cl -0.030 7.030 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.070 4.070 22 Cl -0.035 7.035 23 C -0.121 4.121 24 C -0.059 4.059 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.023 0.977 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.150 0.850 33 H 0.170 0.830 34 H 0.184 0.816 35 H 0.182 0.818 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.022 0.978 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.633 -20.226 -3.846 23.647 hybrid contribution -1.525 1.031 0.111 1.844 sum 10.107 -19.195 -3.735 22.013 Atomic orbital electron populations 1.70090 1.08460 1.28165 1.52245 1.25953 0.95506 1.03531 0.93780 0.85664 0.79595 0.78133 0.79268 1.19179 1.21133 1.16568 1.21922 0.92888 0.93048 1.51066 0.95189 1.20099 0.91672 0.88020 0.97158 1.62281 1.58025 1.02528 1.02121 1.21934 0.96359 0.95777 0.92205 1.20918 1.01905 0.93014 0.95146 1.22474 0.95135 0.93794 0.96748 1.21296 1.05193 0.93629 0.96644 1.18841 0.93929 0.95454 0.94974 1.21449 0.99977 0.99187 0.91473 1.21017 0.94780 0.99464 0.91147 1.98388 1.59702 1.97081 1.47850 1.21311 0.92788 0.97749 1.00052 1.21213 1.00125 0.99119 0.90981 1.21330 0.93526 0.99800 0.92295 1.98379 1.58674 1.96882 1.49553 1.21379 1.01815 0.94386 0.94558 1.21967 0.95783 0.93945 0.94235 0.92553 0.94708 0.95181 0.97683 0.91113 0.89516 0.88188 0.84986 0.83019 0.81622 0.81805 0.88387 0.89891 0.97824 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.95 43.68 27.55 68.60 1.89 45.57 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.24 -10.25 6.43 99.48 0.64 -9.61 16 7 C -0.55 -31.35 8.37 25.60 0.21 -31.14 16 8 H 0.03 1.93 6.17 -2.91 -0.02 1.91 16 9 C 0.16 7.44 4.17 85.56 0.36 7.79 16 10 N -0.53 -21.19 4.77 -899.10 -4.29 -25.48 16 11 C 0.07 2.46 5.08 86.42 0.44 2.90 16 12 C -0.07 -2.00 6.21 30.18 0.19 -1.82 16 13 C -0.08 -2.25 5.33 -17.14 -0.09 -2.34 16 14 C -0.15 -3.78 8.70 23.64 0.21 -3.58 16 15 C -0.03 -0.73 5.27 -20.10 -0.11 -0.83 16 16 C -0.10 -2.18 7.14 22.54 0.16 -2.02 16 17 C -0.04 -0.71 6.31 22.29 0.14 -0.57 16 18 Cl -0.06 -1.05 28.95 -2.72 -0.08 -1.13 16 19 C -0.10 -1.61 9.82 22.34 0.22 -1.39 16 20 C -0.10 -1.65 9.82 22.25 0.22 -1.43 16 21 C -0.04 -0.94 6.35 22.58 0.14 -0.80 16 22 Cl -0.06 -1.46 27.79 -2.72 -0.08 -1.53 16 23 C -0.08 -2.42 4.43 30.32 0.13 -2.29 16 24 C 0.07 2.67 5.02 86.56 0.43 3.10 16 25 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 26 H 0.03 1.61 6.84 -2.39 -0.02 1.60 16 27 H 0.03 1.39 7.74 -2.39 -0.02 1.37 16 28 H 0.00 0.22 7.10 -2.38 -0.02 0.20 16 29 H 0.07 2.58 8.01 -2.39 -0.02 2.56 16 30 H 0.09 2.07 7.94 -2.39 -0.02 2.05 16 31 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.13 3.13 7.58 -2.91 -0.02 3.11 16 33 H 0.15 3.08 6.01 -2.91 -0.02 3.06 16 34 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.10 2.45 7.88 -2.39 -0.02 2.43 16 37 H 0.08 2.26 5.04 -2.39 -0.01 2.25 16 38 H 0.00 0.16 6.74 -2.39 -0.02 0.14 16 39 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 Total: -1.00 -65.94 338.83 1.87 -64.07 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.00 Total: 11.14 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 3.12 Total: -33.34 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -3.99 Total: -84.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.89 Total: 45.57 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.15 Total: -2.66 kcal Total: -65.94 1.87 -64.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000476982368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.875 kcal (2) G-P(sol) polarization free energy of solvation -65.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds