Wall clock time and date at job start Tue Mar 31 2020 14:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46996 * 2 1 4 4 H 1.09000 * 109.47491 * 305.00860 * 3 2 1 5 5 C 1.53000 * 109.47380 * 65.00868 * 3 2 1 6 6 N 1.46904 * 109.47570 * 185.12586 * 5 3 2 7 7 C 1.46898 * 111.00259 * 185.18881 * 6 5 3 8 8 C 1.50690 * 109.47038 * 180.02562 * 7 6 5 9 9 H 1.08006 * 120.00657 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99984 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99908 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99915 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46784 * 90.00089 * 12 10 8 14 14 H 1.48493 * 109.47154 * 210.00042 * 12 10 8 15 15 H 1.48494 * 109.47222 * 330.00480 * 12 10 8 16 16 C 1.53004 * 109.47264 * 185.01018 * 3 2 1 17 17 C 1.50693 * 109.47111 * 64.99893 * 16 3 2 18 18 C 1.38261 * 119.99777 * 90.00109 * 17 16 3 19 19 C 1.38216 * 120.02724 * 180.02562 * 18 17 16 20 20 C 1.38248 * 120.00521 * 0.28199 * 19 18 17 21 21 C 1.38308 * 119.98708 * 359.44511 * 20 19 18 22 22 Br 1.89099 * 120.00656 * 180.30110 * 21 20 19 23 23 C 1.38196 * 119.99833 * 270.02380 * 17 16 3 24 24 H 1.08997 * 109.46942 * 174.04190 * 1 2 3 25 25 H 1.08992 * 109.47039 * 294.04811 * 1 2 3 26 26 H 1.08999 * 109.46608 * 54.04961 * 1 2 3 27 27 H 1.08996 * 109.47082 * 240.00346 * 2 1 3 28 28 H 1.08994 * 109.46749 * 119.99666 * 2 1 3 29 29 H 1.09005 * 109.47219 * 305.13067 * 5 3 2 30 30 H 1.08999 * 109.46974 * 65.12773 * 5 3 2 31 31 H 1.00901 * 110.99530 * 61.23785 * 6 5 3 32 32 H 1.09004 * 109.46908 * 300.00068 * 7 6 5 33 33 H 1.08996 * 109.47143 * 60.00119 * 7 6 5 34 34 H 0.97006 * 119.99839 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.46694 * 305.00178 * 16 3 2 36 36 H 1.09001 * 109.47436 * 184.99850 * 16 3 2 37 37 H 1.08008 * 119.98979 * 0.02562 * 18 17 16 38 38 H 1.08000 * 119.99929 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.00366 * 179.70064 * 20 19 18 40 40 H 1.08009 * 120.00021 * 359.95629 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6354 2.1265 1.3074 6 7 2.0169 3.5442 1.2569 7 6 1.7556 4.2059 2.5421 8 6 2.1578 5.6553 2.4518 9 1 2.5671 6.0460 1.5318 10 6 2.0044 6.4827 3.5440 11 7 2.3559 7.7476 3.4653 12 14 1.2973 5.8071 5.1355 13 1 2.3998 5.2965 5.9895 14 1 0.5743 6.8871 5.8538 15 1 0.3560 4.7004 4.8285 16 6 3.5648 1.4444 -0.1260 17 6 3.9587 0.8823 -1.4675 18 6 4.0990 1.7239 -2.5554 19 6 4.4598 1.2089 -3.7863 20 6 4.6748 -0.1490 -3.9315 21 6 4.5401 -0.9905 -2.8422 22 35 4.8424 -2.8469 -3.0383 23 6 4.1793 -0.4745 -1.6104 24 1 -0.3633 -1.0221 -0.1067 25 1 -0.3633 0.4187 0.9384 26 1 -0.3632 0.6033 -0.8319 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5568 2.0449 1.4415 30 1 2.1429 1.6433 2.1424 31 1 1.5436 4.0193 0.5029 32 1 0.6932 4.1379 2.7764 33 1 2.3328 3.7165 3.3266 34 1 2.2476 8.3297 4.2337 35 1 3.9955 0.8311 0.6656 36 1 3.9356 2.4655 -0.0369 37 1 3.9267 2.7842 -2.4435 38 1 4.5688 1.8667 -4.6359 39 1 4.9520 -0.5520 -4.8944 40 1 4.0700 -1.1319 -0.7604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566555969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:02 Heat of formation + Delta-G solvation = 2.402043 kcal Electronic energy + Delta-G solvation = -19203.583296 eV Core-core repulsion = 16256.304017 eV Total energy + Delta-G solvation = -2947.279279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.73376 -37.28979 -34.42118 -32.76092 -32.21750 -31.84355 -29.68396 -29.01773 -27.24084 -24.79433 -23.26621 -22.43485 -21.37712 -21.08750 -19.68189 -16.94262 -16.80775 -15.58690 -15.38114 -15.19229 -14.64880 -14.40741 -13.88024 -13.79841 -13.61123 -13.25316 -13.00593 -12.88749 -12.56802 -12.25599 -11.92716 -11.76675 -11.49425 -11.25617 -11.11158 -11.06658 -10.85485 -10.74106 -10.52417 -10.42077 -10.39315 -10.19832 -9.77170 -9.29494 -8.96583 -8.74208 -8.60132 -7.45865 -6.07556 -4.05442 0.98206 1.15766 1.44154 3.27455 3.34762 3.36895 3.48912 4.40506 4.59087 4.69731 4.84064 4.91276 4.98035 5.12237 5.20120 5.24650 5.25553 5.38061 5.41242 5.54736 5.67813 5.72297 5.85159 5.86389 5.96396 6.00368 6.05948 6.11012 6.17437 6.22331 6.32947 6.36752 6.54174 6.63791 6.73078 6.76917 7.01796 7.59265 7.88177 8.31904 8.63517 9.00373 9.54660 11.05741 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.002551 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.319365 B =10975.070821 C =11516.132175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.074 4.074 4 H 0.069 0.931 5 C 0.059 3.941 6 N -0.680 5.680 7 C 0.164 3.836 8 C -0.515 4.515 9 H 0.079 0.921 10 C 0.068 3.932 11 N -0.901 5.901 12 Si 0.877 3.123 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.268 1.268 16 C -0.075 4.075 17 C -0.061 4.061 18 C -0.100 4.100 19 C -0.113 4.113 20 C -0.104 4.104 21 C -0.090 4.090 22 Br -0.062 7.062 23 C -0.092 4.092 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.334 0.666 32 H -0.017 1.017 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -22.189 -15.258 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.093 4.093 4 H 0.087 0.913 5 C -0.071 4.071 6 N -0.310 5.310 7 C 0.037 3.963 8 C -0.554 4.554 9 H 0.097 0.903 10 C -0.134 4.134 11 N -0.540 5.540 12 Si 0.705 3.295 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.193 1.193 16 C -0.112 4.112 17 C -0.062 4.062 18 C -0.118 4.118 19 C -0.132 4.132 20 C -0.124 4.124 21 C -0.169 4.169 22 Br 0.023 6.977 23 C -0.111 4.111 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.151 0.849 32 H 0.000 1.000 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.814 -22.839 -15.064 27.624 hybrid contribution -1.374 0.215 0.937 1.677 sum 2.440 -22.624 -14.127 26.784 Atomic orbital electron populations 1.21813 0.96128 1.01067 1.02004 1.21664 0.95804 0.96773 1.01877 1.21133 0.94425 0.95245 0.98508 0.91256 1.22024 0.97362 0.91256 0.96498 1.60450 1.62554 1.00416 1.07579 1.19976 0.93644 0.95204 0.87526 1.21065 1.42006 0.91717 1.00587 0.90309 1.24913 0.95123 0.94733 0.98599 1.69901 1.48286 1.04836 1.30942 0.86826 0.79759 0.78882 0.84060 1.20150 1.21239 1.19290 1.20694 0.95837 1.03025 0.91652 1.20138 0.96819 0.92467 0.96754 1.21347 0.97631 1.00645 0.92160 1.21174 0.99521 0.94519 0.97942 1.21040 1.00328 0.93440 0.97578 1.21741 1.07913 0.90201 0.97016 1.96690 1.95475 1.07323 1.98203 1.21055 0.98829 0.95436 0.95809 0.93219 0.92483 0.92887 0.91792 0.92093 0.95835 0.91805 0.84901 0.99982 0.96097 0.92654 0.91212 0.88361 0.84910 0.85271 0.85472 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.52 37.16 0.35 -1.28 16 2 C -0.12 -1.35 5.12 -26.73 -0.14 -1.49 16 3 C -0.07 -0.93 2.03 -90.62 -0.18 -1.12 16 4 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 5 C 0.06 0.92 4.94 -3.82 -0.02 0.90 16 6 N -0.68 -13.26 5.84 -115.06 -0.67 -13.94 16 7 C 0.16 3.91 4.50 -4.98 -0.02 3.89 16 8 C -0.52 -14.55 9.87 -34.44 -0.34 -14.89 16 9 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 12 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 16 C -0.07 -0.93 4.79 -27.88 -0.13 -1.07 16 17 C -0.06 -0.69 4.72 -104.63 -0.49 -1.19 16 18 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 19 C -0.11 -1.08 10.05 -39.59 -0.40 -1.48 16 20 C -0.10 -1.01 9.79 -39.55 -0.39 -1.40 16 21 C -0.09 -0.94 6.22 -39.52 -0.25 -1.19 16 22 Br -0.06 -0.60 33.70 -68.01 -2.29 -2.89 16 23 C -0.09 -1.00 7.61 -39.56 -0.30 -1.30 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.64 6.75 -51.93 -0.35 0.29 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.69 5.92 -51.93 -0.31 0.38 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.02 0.37 6.47 -51.93 -0.34 0.03 16 30 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.33 6.35 8.78 -39.29 -0.34 6.00 16 32 H -0.02 -0.42 7.20 -51.93 -0.37 -0.80 16 33 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.10 1.42 7.57 -51.93 -0.39 1.03 16 37 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.31 7.99 -52.48 -0.42 0.90 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -29.66 343.61 -10.78 -40.44 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.31 Total: 2.36 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.79 Total: -21.20 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.10 Total: -40.71 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.66 -10.78 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566555969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.844 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds