Wall clock time and date at job start Tue Mar 31 2020 14:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46996 * 2 1 4 4 H 1.09000 * 109.47491 * 305.00860 * 3 2 1 5 5 C 1.53000 * 109.47380 * 65.00868 * 3 2 1 6 6 N 1.46904 * 109.47570 * 185.12586 * 5 3 2 7 7 C 1.46898 * 111.00259 * 185.18881 * 6 5 3 8 8 C 1.50690 * 109.47038 * 180.02562 * 7 6 5 9 9 H 1.08006 * 120.00657 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99984 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99908 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99915 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46784 * 90.00089 * 12 10 8 14 14 H 1.48493 * 109.47154 * 210.00042 * 12 10 8 15 15 H 1.48494 * 109.47222 * 330.00480 * 12 10 8 16 16 C 1.53004 * 109.47264 * 185.01018 * 3 2 1 17 17 C 1.50693 * 109.47111 * 64.99893 * 16 3 2 18 18 C 1.38261 * 119.99777 * 90.00109 * 17 16 3 19 19 C 1.38216 * 120.02724 * 180.02562 * 18 17 16 20 20 C 1.38248 * 120.00521 * 0.28199 * 19 18 17 21 21 C 1.38308 * 119.98708 * 359.44511 * 20 19 18 22 22 Br 1.89099 * 120.00656 * 180.30110 * 21 20 19 23 23 C 1.38196 * 119.99833 * 270.02380 * 17 16 3 24 24 H 1.08997 * 109.46942 * 174.04190 * 1 2 3 25 25 H 1.08992 * 109.47039 * 294.04811 * 1 2 3 26 26 H 1.08999 * 109.46608 * 54.04961 * 1 2 3 27 27 H 1.08996 * 109.47082 * 240.00346 * 2 1 3 28 28 H 1.08994 * 109.46749 * 119.99666 * 2 1 3 29 29 H 1.09005 * 109.47219 * 305.13067 * 5 3 2 30 30 H 1.08999 * 109.46974 * 65.12773 * 5 3 2 31 31 H 1.00901 * 110.99530 * 61.23785 * 6 5 3 32 32 H 1.09004 * 109.46908 * 300.00068 * 7 6 5 33 33 H 1.08996 * 109.47143 * 60.00119 * 7 6 5 34 34 H 0.97006 * 119.99839 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.46694 * 305.00178 * 16 3 2 36 36 H 1.09001 * 109.47436 * 184.99850 * 16 3 2 37 37 H 1.08008 * 119.98979 * 0.02562 * 18 17 16 38 38 H 1.08000 * 119.99929 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.00366 * 179.70064 * 20 19 18 40 40 H 1.08009 * 120.00021 * 359.95629 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6354 2.1265 1.3074 6 7 2.0169 3.5442 1.2569 7 6 1.7556 4.2059 2.5421 8 6 2.1578 5.6553 2.4518 9 1 2.5671 6.0460 1.5318 10 6 2.0044 6.4827 3.5440 11 7 2.3559 7.7476 3.4653 12 14 1.2973 5.8071 5.1355 13 1 2.3998 5.2965 5.9895 14 1 0.5743 6.8871 5.8538 15 1 0.3560 4.7004 4.8285 16 6 3.5648 1.4444 -0.1260 17 6 3.9587 0.8823 -1.4675 18 6 4.0990 1.7239 -2.5554 19 6 4.4598 1.2089 -3.7863 20 6 4.6748 -0.1490 -3.9315 21 6 4.5401 -0.9905 -2.8422 22 35 4.8424 -2.8469 -3.0383 23 6 4.1793 -0.4745 -1.6104 24 1 -0.3633 -1.0221 -0.1067 25 1 -0.3633 0.4187 0.9384 26 1 -0.3632 0.6033 -0.8319 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5568 2.0449 1.4415 30 1 2.1429 1.6433 2.1424 31 1 1.5436 4.0193 0.5029 32 1 0.6932 4.1379 2.7764 33 1 2.3328 3.7165 3.3266 34 1 2.2476 8.3297 4.2337 35 1 3.9955 0.8311 0.6656 36 1 3.9356 2.4655 -0.0369 37 1 3.9267 2.7842 -2.4435 38 1 4.5688 1.8667 -4.6359 39 1 4.9520 -0.5520 -4.8944 40 1 4.0700 -1.1319 -0.7604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566555969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:02 Heat of formation + Delta-G solvation = -13.519106 kcal Electronic energy + Delta-G solvation = -19204.273689 eV Core-core repulsion = 16256.304017 eV Total energy + Delta-G solvation = -2947.969671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58366 -38.44017 -36.00358 -34.26808 -33.54054 -32.67113 -30.73888 -30.08968 -28.73630 -26.04859 -24.39071 -23.29218 -22.95264 -22.25242 -20.75161 -18.92874 -17.73122 -16.79559 -16.47141 -16.35160 -16.06868 -15.69409 -15.22261 -14.86454 -14.59302 -14.40187 -14.26636 -14.07108 -13.88616 -13.65918 -13.28747 -12.92290 -12.70313 -12.54672 -12.39135 -12.05505 -11.94772 -11.90778 -11.88383 -11.58681 -11.52444 -11.39508 -11.28465 -11.08485 -10.80229 -9.76755 -9.57150 -9.05214 -8.29691 -6.33687 0.17080 0.35962 0.65966 1.35273 1.36224 1.47213 2.34108 2.67765 3.04676 3.52312 3.71435 3.90428 3.97972 4.10534 4.20116 4.28714 4.39730 4.44484 4.48455 4.59756 4.69125 4.72906 4.80701 4.89070 4.91009 4.99597 5.03119 5.10031 5.15532 5.22011 5.25556 5.35155 5.42134 5.45014 5.53079 5.53947 5.71181 5.91252 5.98266 6.57928 6.68562 6.79595 7.31530 8.87000 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.002551 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.319365 B =10975.070821 C =11516.132175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.064 4.064 4 H 0.066 0.934 5 C 0.061 3.939 6 N -0.684 5.684 7 C 0.175 3.825 8 C -0.526 4.526 9 H 0.039 0.961 10 C 0.007 3.993 11 N -0.948 5.948 12 Si 0.950 3.050 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.251 1.251 16 C -0.068 4.068 17 C -0.070 4.070 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.104 4.104 21 C -0.099 4.099 22 Br -0.054 7.054 23 C -0.096 4.096 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.335 0.665 32 H -0.016 1.016 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 -24.469 -15.344 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.083 4.083 4 H 0.084 0.916 5 C -0.069 4.069 6 N -0.314 5.314 7 C 0.046 3.954 8 C -0.564 4.564 9 H 0.057 0.943 10 C -0.190 4.190 11 N -0.589 5.589 12 Si 0.773 3.227 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.175 1.175 16 C -0.106 4.106 17 C -0.071 4.071 18 C -0.131 4.131 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.178 4.178 22 Br 0.031 6.969 23 C -0.115 4.115 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.001 0.999 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.251 -25.145 -15.170 29.547 hybrid contribution -1.140 0.930 0.836 1.692 sum 2.111 -24.215 -14.334 28.219 Atomic orbital electron populations 1.21809 0.95713 1.01903 1.01543 1.21602 0.96070 0.95263 1.02473 1.21027 0.94582 0.96130 0.96555 0.91599 1.22104 0.97684 0.88813 0.98260 1.60348 1.63073 1.02267 1.05756 1.19722 0.93309 0.92769 0.89570 1.21358 1.41547 0.94250 0.99224 0.94279 1.25875 0.95526 0.94884 1.02740 1.70054 1.49945 1.06496 1.32372 0.85676 0.79414 0.78634 0.78959 1.19119 1.20737 1.17492 1.20550 0.95651 1.01666 0.92718 1.20015 0.97926 0.92917 0.96217 1.21467 0.98154 1.00662 0.92774 1.21428 0.98525 0.94934 0.98074 1.21318 0.99504 0.93415 0.98177 1.21896 1.07928 0.90855 0.97150 1.96696 1.95433 1.06598 1.98163 1.21100 0.98927 0.95182 0.96318 0.91821 0.93165 0.93069 0.91168 0.91484 0.95291 0.91844 0.84763 0.99865 0.95962 0.92399 0.91013 0.90825 0.85131 0.83035 0.83656 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.52 71.98 0.69 -2.26 16 2 C -0.12 -2.33 5.12 30.59 0.16 -2.17 16 3 C -0.06 -1.55 2.03 -10.79 -0.02 -1.58 16 4 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 5 C 0.06 1.84 4.94 86.30 0.43 2.26 16 6 N -0.68 -26.71 5.84 -517.94 -3.02 -29.74 16 7 C 0.18 8.26 4.50 85.55 0.38 8.65 16 8 C -0.53 -30.31 9.87 25.60 0.25 -30.06 16 9 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 10 C 0.01 0.42 5.47 84.66 0.46 0.88 16 11 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 12 Si 0.95 44.03 27.47 68.60 1.88 45.91 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 16 C -0.07 -1.68 4.79 29.85 0.14 -1.54 16 17 C -0.07 -1.54 4.72 -19.87 -0.09 -1.63 16 18 C -0.11 -2.35 9.70 22.27 0.22 -2.13 16 19 C -0.11 -1.93 10.05 22.27 0.22 -1.71 16 20 C -0.10 -1.82 9.79 22.29 0.22 -1.60 16 21 C -0.10 -1.91 6.22 22.31 0.14 -1.77 16 22 Br -0.05 -0.95 33.70 -20.37 -0.69 -1.63 16 23 C -0.10 -1.95 7.61 22.28 0.17 -1.78 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.03 6.75 -2.39 -0.02 1.02 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.36 5.92 -2.39 -0.01 1.34 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.03 0.86 6.47 -2.38 -0.02 0.85 16 30 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 31 H 0.34 12.92 8.78 -89.69 -0.79 12.13 16 32 H -0.02 -0.76 7.20 -2.38 -0.02 -0.78 16 33 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 34 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 35 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 36 H 0.07 2.17 7.57 -2.39 -0.02 2.16 16 37 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.14 2.53 7.99 -2.91 -0.02 2.50 16 Total: -1.00 -63.87 343.61 2.01 -61.86 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.17 Total: 19.04 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 3.36 Total: -36.44 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.73 Total: -88.73 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 35 Polarization: -0.95 SS G_CDS: -0.69 Total: -1.63 kcal Total: -63.87 2.01 -61.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566555969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.338 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds