Wall clock time and date at job start Tue Mar 31 2020 14:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47615 * 2 1 4 4 H 1.09003 * 109.47300 * 177.62615 * 3 2 1 5 5 C 1.50705 * 109.46899 * 57.62531 * 3 2 1 6 6 H 1.07998 * 119.99960 * 239.99833 * 5 3 2 7 7 C 1.37875 * 119.99770 * 60.00049 * 5 3 2 8 8 N 1.31514 * 120.00367 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99899 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46926 * 60.00375 * 9 7 5 11 11 H 1.48502 * 109.47248 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47328 * 300.00584 * 9 7 5 13 13 N 1.46901 * 109.47072 * 297.62767 * 3 2 1 14 14 C 1.46894 * 110.99960 * 274.12871 * 13 3 2 15 15 C 1.52997 * 109.47076 * 184.28431 * 14 13 3 16 16 C 1.53007 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.46734 * 179.97438 * 16 15 14 18 18 C 1.38241 * 120.00269 * 100.00081 * 17 16 15 19 19 C 1.38224 * 120.00583 * 179.97438 * 18 17 16 20 20 C 1.38260 * 120.02283 * 0.02562 * 19 18 17 21 21 C 1.38199 * 120.00940 * 359.97438 * 20 19 18 22 22 C 1.38299 * 120.00275 * 279.72063 * 17 16 15 23 23 Br 1.89103 * 120.01310 * 0.02694 * 22 17 16 24 24 H 1.09001 * 109.47157 * 54.76991 * 1 2 3 25 25 H 1.08997 * 109.47384 * 174.78166 * 1 2 3 26 26 H 1.09011 * 109.46703 * 294.77419 * 1 2 3 27 27 H 1.09003 * 109.47231 * 239.99916 * 2 1 3 28 28 H 1.09007 * 109.47223 * 120.00460 * 2 1 3 29 29 H 0.97002 * 120.00226 * 180.02562 * 8 7 5 30 30 H 1.00902 * 110.99821 * 150.17125 * 13 3 2 31 31 H 1.09004 * 109.46837 * 304.28254 * 14 13 3 32 32 H 1.08997 * 109.47342 * 64.28007 * 14 13 3 33 33 H 1.09004 * 109.47143 * 299.99635 * 15 14 13 34 34 H 1.08998 * 109.47435 * 60.00145 * 15 14 13 35 35 H 1.08999 * 109.47054 * 299.99381 * 16 15 14 36 36 H 1.08994 * 109.47503 * 60.00080 * 16 15 14 37 37 H 1.07995 * 119.99594 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.98667 * 180.02562 * 19 18 17 39 39 H 1.07991 * 119.99782 * 179.97438 * 20 19 18 40 40 H 1.07996 * 120.00538 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1293 1.4427 0.0426 5 6 1.4903 2.1697 1.2000 6 1 0.8740 3.0462 1.0647 7 6 1.7741 1.7160 2.4707 8 7 2.5249 0.6489 2.6356 9 14 1.0932 2.6177 3.9582 10 1 -0.3907 2.6179 3.9004 11 1 1.5406 1.9349 5.1986 12 1 1.5887 4.0177 3.9580 13 7 1.5978 2.1182 -1.2271 14 6 2.5365 1.8737 -2.3302 15 6 2.1016 2.6772 -3.5575 16 6 3.0796 2.4229 -4.7063 17 6 2.6508 3.2140 -5.9153 18 6 3.2755 4.4100 -6.2161 19 6 2.8827 5.1353 -7.3252 20 6 1.8645 4.6653 -8.1340 21 6 1.2395 3.4698 -7.8341 22 6 1.6363 2.7406 -6.7273 23 35 0.7862 1.1011 -6.3204 24 1 -0.3633 0.5928 -0.8394 25 1 -0.3634 -1.0234 -0.0935 26 1 -0.3633 0.4307 0.9332 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.7242 0.3295 3.5295 30 1 1.4736 3.1073 -1.0705 31 1 3.5380 2.1821 -2.0302 32 1 2.5413 0.8114 -2.5745 33 1 1.1001 2.3688 -3.8575 34 1 2.0968 3.7395 -3.3133 35 1 4.0809 2.7317 -4.4061 36 1 3.0849 1.3608 -4.9508 37 1 4.0706 4.7776 -5.5844 38 1 3.3712 6.0694 -7.5601 39 1 1.5576 5.2325 -9.0002 40 1 0.4445 3.1026 -8.4661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578450813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:52 Heat of formation + Delta-G solvation = 6.361094 kcal Electronic energy + Delta-G solvation = -19196.877258 eV Core-core repulsion = 16249.769657 eV Total energy + Delta-G solvation = -2947.107601 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63467 -36.60822 -34.65169 -32.60427 -32.19387 -30.91246 -29.65575 -28.95676 -26.40577 -24.50831 -23.03458 -22.66799 -21.60002 -20.69679 -18.92947 -16.87333 -16.30385 -15.95342 -15.30653 -14.93954 -14.57913 -13.96102 -13.78111 -13.68654 -13.41239 -13.09415 -12.96490 -12.28150 -12.06773 -11.73837 -11.61346 -11.49958 -11.24465 -11.10023 -10.91915 -10.82986 -10.62457 -10.39090 -10.31250 -10.10001 -9.92800 -9.62708 -9.29728 -9.04369 -8.77324 -8.71312 -8.42734 -7.15666 -5.98182 -4.03322 0.91248 1.08310 1.57853 3.32633 3.37330 3.39960 3.41249 4.42478 4.52118 4.59878 4.73005 5.03744 5.09575 5.25319 5.31020 5.34191 5.39083 5.61624 5.72523 5.86020 5.91006 6.01630 6.08203 6.17908 6.23979 6.27417 6.57366 6.61143 6.64263 6.67771 6.78093 6.91828 7.29755 7.38599 7.56436 7.79530 7.84273 7.90327 8.31790 8.46034 8.74226 9.06629 9.61172 11.07860 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.003076 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.270204 B = 9100.358283 C = 9908.853188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.064 3.936 15 C -0.111 4.111 16 C -0.090 4.090 17 C -0.044 4.044 18 C -0.114 4.114 19 C -0.104 4.104 20 C -0.126 4.126 21 C -0.091 4.091 22 C -0.091 4.091 23 Br -0.042 7.042 24 H 0.047 0.953 25 H 0.011 0.989 26 H 0.051 0.949 27 H 0.009 0.991 28 H 0.084 0.916 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 5.052 -22.953 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.066 4.066 15 C -0.149 4.149 16 C -0.128 4.128 17 C -0.046 4.046 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.145 4.145 21 C -0.111 4.111 22 C -0.171 4.171 23 Br 0.044 6.956 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.630 3.786 -22.816 23.137 hybrid contribution 0.607 1.389 0.998 1.815 sum -0.023 5.175 -21.818 22.424 Atomic orbital electron populations 1.21435 0.97548 0.97043 1.01560 1.21408 0.95070 0.98283 0.99179 1.19119 0.93209 0.91643 0.85194 0.98335 1.21170 1.31560 1.11916 0.90440 0.92408 1.24883 0.95131 0.95037 0.98810 1.69883 1.37533 1.23197 1.22235 0.86653 0.79490 0.79739 0.82065 1.20210 1.21377 1.20418 1.60677 1.47692 1.15783 1.07507 1.21871 0.93846 0.99397 0.91482 1.21580 0.99407 1.00188 0.93709 1.20801 1.00072 0.99940 0.92020 1.19938 0.93819 0.95207 0.95608 1.21122 1.00385 0.94158 0.97643 1.21274 0.96729 0.99607 0.94643 1.21116 0.96974 0.96095 1.00275 1.21109 0.99565 0.94683 0.95700 1.21818 1.00359 0.95401 0.99511 1.96758 1.78402 1.26004 1.94462 0.93437 0.96965 0.92988 0.97206 0.89813 0.92962 0.85465 0.96556 0.91963 0.90666 0.92474 0.90674 0.89973 0.85155 0.85557 0.85426 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.46 37.16 0.35 -2.40 16 2 C -0.10 -2.50 5.57 -26.73 -0.15 -2.65 16 3 C 0.22 5.44 2.31 -68.86 -0.16 5.28 16 4 H 0.00 -0.03 7.72 -51.93 -0.40 -0.43 16 5 C -0.51 -13.87 7.31 -34.44 -0.25 -14.12 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.39 11.34 55.43 0.63 -24.77 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.69 -14.57 5.58 -107.95 -0.60 -15.17 16 14 C 0.06 1.15 5.53 -3.83 -0.02 1.13 16 15 C -0.11 -1.62 5.34 -26.73 -0.14 -1.76 16 16 C -0.09 -1.12 4.76 -27.88 -0.13 -1.25 16 17 C -0.04 -0.51 5.14 -104.59 -0.54 -1.05 16 18 C -0.11 -1.14 9.67 -39.59 -0.38 -1.52 16 19 C -0.10 -0.89 10.05 -39.58 -0.40 -1.29 16 20 C -0.13 -1.06 10.05 -39.59 -0.40 -1.46 16 21 C -0.09 -0.89 9.79 -39.55 -0.39 -1.28 16 22 C -0.09 -1.06 6.22 -39.52 -0.25 -1.30 16 23 Br -0.04 -0.51 30.88 -68.01 -2.10 -2.61 16 24 H 0.05 1.07 7.52 -51.93 -0.39 0.68 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.05 1.29 7.35 -51.92 -0.38 0.91 16 27 H 0.01 0.22 7.54 -51.93 -0.39 -0.17 16 28 H 0.08 2.29 6.14 -51.93 -0.32 1.97 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.33 6.85 8.15 -39.29 -0.32 6.53 16 31 H 0.02 0.30 7.95 -51.93 -0.41 -0.11 16 32 H 0.06 1.16 7.55 -51.93 -0.39 0.76 16 33 H 0.07 1.17 7.02 -51.93 -0.36 0.80 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.85 8.01 -51.93 -0.42 0.44 16 36 H 0.08 1.04 7.13 -51.93 -0.37 0.67 16 37 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -28.58 341.62 -11.12 -39.70 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.23 Total: 3.45 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.95 Total: -22.03 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.03 Total: -39.94 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.10 Total: -2.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.58 -11.12 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578450813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.066 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds