Wall clock time and date at job start Tue Mar 31 2020 14:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38246 * 120.00546 * 2 1 4 4 C 1.38217 * 120.01018 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.98796 * 179.97438 * 4 3 2 6 6 N 1.46893 * 109.47092 * 83.66999 * 5 4 3 7 7 C 1.46904 * 111.00026 * 198.66194 * 6 5 4 8 8 C 1.50698 * 109.47353 * 163.28420 * 7 6 5 9 9 H 1.08000 * 119.99677 * 357.68222 * 8 7 6 10 10 C 1.37873 * 120.00186 * 177.68022 * 8 7 6 11 11 N 1.31514 * 119.99910 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00007 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47123 * 60.00239 * 12 10 8 14 14 H 1.48501 * 109.47135 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47334 * 299.99986 * 12 10 8 16 16 C 1.46899 * 111.00246 * 74.70969 * 6 5 4 17 17 C 1.53001 * 109.46967 * 70.52785 * 16 6 5 18 18 C 1.53002 * 109.47329 * 190.53237 * 16 6 5 19 19 C 1.38264 * 120.01888 * 359.97438 * 4 3 2 20 20 C 1.38187 * 120.01311 * 359.97438 * 19 4 3 21 21 C 1.38306 * 120.00622 * 179.97438 * 2 1 3 22 22 Br 1.89106 * 120.01022 * 359.74575 * 21 2 1 23 23 H 1.09002 * 109.47498 * 270.02222 * 1 2 3 24 24 H 1.08997 * 109.46984 * 30.03032 * 1 2 3 25 25 H 1.09009 * 109.47105 * 150.02301 * 1 2 3 26 26 H 1.07997 * 119.98909 * 359.97370 * 3 2 1 27 27 H 1.09002 * 109.47194 * 203.67045 * 5 4 3 28 28 H 1.09000 * 109.46838 * 323.66800 * 5 4 3 29 29 H 1.08996 * 109.46843 * 283.29009 * 7 6 5 30 30 H 1.09001 * 109.46698 * 43.28536 * 7 6 5 31 31 H 0.96996 * 119.99607 * 179.97438 * 11 10 8 32 32 H 1.09005 * 109.47160 * 310.53247 * 16 6 5 33 33 H 1.08998 * 109.46755 * 68.13340 * 17 16 6 34 34 H 1.08998 * 109.46804 * 188.12497 * 17 16 6 35 35 H 1.08991 * 109.47303 * 308.12702 * 17 16 6 36 36 H 1.08998 * 109.47348 * 51.70987 * 18 16 6 37 37 H 1.08996 * 109.46852 * 171.71319 * 18 16 6 38 38 H 1.08998 * 109.46559 * 291.71148 * 18 16 6 39 39 H 1.08001 * 119.99202 * 180.02562 * 19 4 3 40 40 H 1.08000 * 120.00785 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3336 2.5026 0.0000 6 7 4.4455 3.0040 1.3761 7 6 4.7616 4.4385 1.3898 8 6 4.4692 5.0044 2.7555 9 1 4.0517 4.3711 3.5243 10 6 4.7348 6.3305 3.0236 11 7 5.2437 7.1015 2.0875 12 14 4.3717 7.0321 4.7164 13 1 5.1593 6.2951 5.7370 14 1 4.7445 8.4692 4.7470 15 1 2.9232 6.8896 5.0111 16 6 5.4424 2.2381 2.1361 17 6 6.8433 2.5690 1.6175 18 6 5.3470 2.6060 3.6181 19 6 4.2723 0.0002 0.0016 20 6 3.5821 -1.1970 0.0027 21 6 2.1986 -1.1977 0.0005 22 35 1.2536 -2.8357 0.0085 23 1 -0.3634 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3634 -0.8903 -0.5135 26 1 1.6582 2.1324 -0.0004 27 1 5.3306 2.3467 -0.4121 28 1 3.7983 3.2306 -0.6096 29 1 5.8166 4.5803 1.1559 30 1 4.1523 4.9518 0.6458 31 1 5.4301 8.0345 2.2761 32 1 5.2521 1.1718 2.0135 33 1 7.0899 3.6003 1.8699 34 1 7.5689 1.8988 2.0784 35 1 6.8691 2.4436 0.5352 36 1 4.3134 2.5097 3.9506 37 1 5.9798 1.9362 4.2002 38 1 5.6797 3.6344 3.7592 39 1 5.3523 0.0008 0.0024 40 1 4.1226 -2.1320 0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579378109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:31 Heat of formation + Delta-G solvation = 27.977070 kcal Electronic energy + Delta-G solvation = -20021.921492 eV Core-core repulsion = 17075.751230 eV Total energy + Delta-G solvation = -2946.170262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.61051 -37.61608 -33.53846 -32.51863 -32.22885 -30.94047 -29.38599 -27.61770 -26.74970 -26.18324 -24.37666 -22.30319 -22.03243 -20.37688 -18.62101 -16.53712 -16.09487 -15.74953 -15.21819 -14.82222 -14.53056 -14.07791 -13.85433 -13.44287 -13.24809 -12.99974 -12.45411 -12.26153 -12.18642 -12.15274 -11.66188 -11.39031 -11.23608 -11.07673 -10.99220 -10.91304 -10.67608 -10.65437 -10.53727 -10.28826 -10.17143 -10.12503 -9.41923 -9.00098 -8.68866 -8.43899 -8.35371 -7.22786 -6.02098 -3.99094 1.21217 1.42072 1.65621 3.32694 3.37452 3.40176 3.69618 4.42864 4.77616 4.84455 4.92955 5.11056 5.32175 5.37846 5.40784 5.54002 5.61437 5.69519 5.71918 5.78160 5.86412 6.00548 6.02464 6.11698 6.20554 6.28874 6.33026 6.44652 6.53184 6.61275 6.73917 6.78734 6.96076 6.98279 7.22087 7.40537 7.48054 7.83917 8.11877 8.20026 8.54883 9.05429 9.60972 11.08486 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023885 B = 0.003138 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.020047 B = 8920.256988 C = 9272.684656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.059 4.059 3 C -0.093 4.093 4 C -0.036 4.036 5 C 0.081 3.919 6 N -0.524 5.524 7 C 0.186 3.814 8 C -0.502 4.502 9 H 0.075 0.925 10 C 0.053 3.947 11 N -0.900 5.900 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.090 3.910 17 C -0.183 4.183 18 C -0.145 4.145 19 C -0.118 4.118 20 C -0.090 4.090 21 C -0.101 4.101 22 Br -0.065 7.065 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.006 0.994 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.027 0.973 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 -18.475 -5.997 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.061 4.061 3 C -0.112 4.112 4 C -0.037 4.037 5 C -0.047 4.047 6 N -0.248 5.248 7 C 0.061 3.939 8 C -0.541 4.541 9 H 0.093 0.907 10 C -0.148 4.148 11 N -0.540 5.540 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.202 1.202 16 C -0.019 4.019 17 C -0.242 4.242 18 C -0.202 4.202 19 C -0.138 4.138 20 C -0.110 4.110 21 C -0.181 4.181 22 Br 0.020 6.980 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.151 0.849 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.370 -18.938 -5.793 20.804 hybrid contribution 0.922 0.940 0.495 1.407 sum -5.448 -17.998 -5.298 19.536 Atomic orbital electron populations 1.20963 0.90641 1.03286 1.03043 1.19767 0.96376 0.91578 0.98362 1.20950 0.93725 0.97068 0.99475 1.20151 0.93851 0.95282 0.94391 1.21137 0.97668 0.92696 0.93200 1.62395 1.47075 1.06381 1.08925 1.19880 0.95515 0.80507 0.97971 1.21398 1.40612 0.94487 0.97570 0.90745 1.24974 0.95741 0.97056 0.96983 1.69946 1.44604 1.06530 1.32958 0.86655 0.78867 0.77884 0.84607 1.20242 1.21495 1.20231 1.21453 0.88946 0.96299 0.95197 1.22454 0.98700 1.03095 0.99949 1.22243 1.00764 1.03683 0.93542 1.21053 0.99920 0.91456 1.01347 1.20960 0.91917 0.98710 0.99390 1.21571 0.94553 0.90518 1.11418 1.96599 1.76047 1.27520 1.97844 0.90567 0.91024 0.90914 0.84939 0.94234 0.90285 0.97588 0.95846 0.92995 0.92396 0.90844 0.93618 0.93743 0.92825 0.95431 0.88544 0.85651 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.55 36.00 0.34 -0.99 16 2 C -0.06 -0.78 5.88 -104.60 -0.62 -1.39 16 3 C -0.09 -1.35 9.38 -39.59 -0.37 -1.72 16 4 C -0.04 -0.54 4.99 -104.62 -0.52 -1.06 16 5 C 0.08 1.38 5.02 -4.98 -0.03 1.35 16 6 N -0.52 -10.55 4.42 -229.52 -1.01 -11.56 16 7 C 0.19 4.52 4.48 -4.97 -0.02 4.50 16 8 C -0.50 -13.21 6.67 -34.44 -0.23 -13.44 16 9 H 0.07 1.94 5.36 -52.49 -0.28 1.66 16 10 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 11 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 12 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.09 1.67 2.83 -67.71 -0.19 1.47 16 17 C -0.18 -3.22 8.32 37.16 0.31 -2.91 16 18 C -0.15 -2.83 7.69 37.16 0.29 -2.55 16 19 C -0.12 -1.60 8.39 -39.59 -0.33 -1.93 16 20 C -0.09 -1.14 9.79 -39.56 -0.39 -1.52 16 21 C -0.10 -1.31 6.22 -39.52 -0.25 -1.56 16 22 Br -0.07 -0.73 31.79 -68.01 -2.16 -2.89 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 25 H 0.07 0.73 6.65 -51.92 -0.35 0.39 16 26 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 27 H 0.04 0.64 6.03 -51.93 -0.31 0.33 16 28 H 0.08 1.35 7.64 -51.93 -0.40 0.96 16 29 H 0.01 0.16 5.69 -51.93 -0.30 -0.13 16 30 H 0.02 0.62 7.68 -51.93 -0.40 0.22 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 1.00 6.31 -51.93 -0.33 0.67 16 33 H 0.07 1.50 6.49 -51.93 -0.34 1.16 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.73 6.26 -51.93 -0.33 0.41 16 36 H 0.05 1.08 7.48 -51.93 -0.39 0.69 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 2.15 5.44 -51.93 -0.28 1.87 16 39 H 0.13 1.54 8.02 -52.49 -0.42 1.12 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -27.60 331.02 -10.35 -37.95 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.78 Total: 0.97 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.10 Total: -20.40 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.28 Total: -36.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.16 Total: -2.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.60 -10.35 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579378109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.928 kcal (2) G-P(sol) polarization free energy of solvation -27.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds