Wall clock time and date at job start Tue Mar 31 2020 14:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46905 * 110.99837 * 293.95486 * 14 13 2 16 16 C 1.46905 * 111.00567 * 170.00024 * 14 13 2 17 17 C 1.50695 * 109.47434 * 189.99928 * 16 14 13 18 18 C 1.38239 * 119.98976 * 269.72424 * 17 16 14 19 19 C 1.38227 * 120.00688 * 179.76961 * 18 17 16 20 20 C 1.38320 * 119.99124 * 0.50135 * 19 18 17 21 21 Br 1.89092 * 120.01136 * 179.72420 * 20 19 18 22 22 C 1.38323 * 119.97751 * 359.75380 * 20 19 18 23 23 C 1.38216 * 119.99117 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 32 32 H 1.09003 * 109.47034 * 60.00137 * 15 14 13 33 33 H 1.09009 * 109.46956 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.47265 * 299.99320 * 15 14 13 35 35 H 1.08997 * 109.46495 * 310.00319 * 16 14 13 36 36 H 1.08999 * 109.46712 * 69.99812 * 16 14 13 37 37 H 1.07998 * 119.99814 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.00172 * 180.23280 * 19 18 17 39 39 H 1.08002 * 120.00330 * 179.97438 * 22 20 19 40 40 H 1.08005 * 119.99357 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.3341 1.3374 2.4894 16 6 1.9123 -0.7357 3.6672 17 6 1.2829 -0.0398 4.8463 18 6 2.0068 0.8929 5.5654 19 6 1.4282 1.5349 6.6441 20 6 0.1281 1.2366 7.0103 21 35 -0.6613 2.1090 8.4907 22 6 -0.5940 0.2995 6.2937 23 6 -0.0166 -0.3379 5.2117 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 2.9246 -1.8413 -4.7316 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 2.0678 1.9176 1.6059 33 1 2.0280 1.8785 3.3848 34 1 3.4126 1.1809 2.5100 35 1 1.4856 -1.7334 3.5638 36 1 2.9880 -0.8151 3.8239 37 1 3.0232 1.1228 5.2819 38 1 1.9926 2.2663 7.2036 39 1 -1.6090 0.0660 6.5795 40 1 -0.5803 -1.0700 4.6524 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602432672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:15 Heat of formation + Delta-G solvation = 13.566432 kcal Electronic energy + Delta-G solvation = -19163.673559 eV Core-core repulsion = 16216.878405 eV Total energy + Delta-G solvation = -2946.795154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78227 -37.62346 -34.63136 -32.74911 -31.80656 -31.29747 -29.93838 -27.23359 -26.88620 -25.96809 -23.65159 -22.98492 -21.91158 -20.77637 -18.85169 -16.82719 -16.39403 -15.86067 -15.47143 -15.39606 -14.73756 -14.36432 -14.13471 -13.75980 -13.57572 -13.22549 -12.86028 -12.53366 -12.33835 -11.91810 -11.70808 -11.42642 -11.32641 -11.25086 -11.15096 -10.94790 -10.86138 -10.71453 -10.53703 -10.28461 -10.25442 -9.61438 -9.22181 -9.16487 -8.97553 -8.78908 -8.32738 -8.06876 -5.97754 -3.98706 0.85412 1.10028 1.38640 3.32833 3.34980 3.39311 3.42845 4.26571 4.48627 4.52509 4.65259 4.68435 5.02626 5.12910 5.34571 5.36757 5.38205 5.46799 5.57214 5.64837 5.74737 5.80078 5.94174 5.96604 6.00267 6.10072 6.20316 6.36808 6.39210 6.53207 6.59352 6.69473 7.00142 7.11643 7.20270 7.31609 7.39393 7.69311 7.85216 8.02535 8.46713 9.07672 9.64703 11.13792 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.036586 B = 0.002104 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.127992 B =13301.866232 C =13548.146022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.532 5.532 15 C 0.018 3.982 16 C 0.086 3.914 17 C -0.051 4.051 18 C -0.109 4.109 19 C -0.093 4.093 20 C -0.094 4.094 21 Br -0.060 7.060 22 C -0.092 4.092 23 C -0.093 4.093 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.012 0.988 28 H 0.016 0.984 29 H 0.259 0.741 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 4.820 26.885 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 N -0.255 5.255 15 C -0.130 4.130 16 C -0.041 4.041 17 C -0.052 4.052 18 C -0.129 4.129 19 C -0.113 4.113 20 C -0.174 4.174 21 Br 0.025 6.975 22 C -0.112 4.112 23 C -0.112 4.112 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.961 5.107 27.270 28.184 hybrid contribution 0.874 0.151 -1.225 1.512 sum -4.087 5.258 26.045 26.883 Atomic orbital electron populations 1.21579 0.95744 1.00478 1.00174 1.21224 0.95973 0.99118 0.93615 0.92534 1.19129 0.95871 0.95579 0.90477 1.21230 1.34541 1.08241 0.90965 0.92589 1.25019 0.95363 0.95093 0.99092 1.69963 1.39126 1.21254 1.23365 0.86637 0.78934 0.79818 0.82875 1.20778 1.21305 1.19877 1.22371 0.97695 0.97195 0.89378 1.62066 1.58323 1.03997 1.01158 1.22506 0.95701 0.91894 1.02862 1.21120 0.98009 0.96940 0.88068 1.19993 0.94204 0.95704 0.95323 1.21107 1.00295 0.96391 0.95070 1.21047 0.93304 0.99663 0.97244 1.21743 0.96727 1.01665 0.97216 1.96699 1.82540 1.78254 1.40025 1.21113 0.99833 0.95158 0.95053 1.21086 0.94533 0.99768 0.95800 0.94232 0.93937 0.92808 0.96987 0.96584 0.93114 0.91240 0.95203 0.90538 0.91824 0.95924 0.89708 0.93949 0.85368 0.85231 0.85116 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.08 -1.61 2.26 -90.62 -0.20 -1.82 16 3 H 0.06 1.16 6.34 -51.93 -0.33 0.83 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.01 4.35 -3.83 -0.02 0.99 16 14 N -0.53 -7.48 4.21 -244.36 -1.03 -8.51 16 15 C 0.02 0.25 8.99 60.07 0.54 0.79 16 16 C 0.09 0.99 5.12 -4.98 -0.03 0.97 16 17 C -0.05 -0.55 4.88 -104.62 -0.51 -1.06 16 18 C -0.11 -1.06 7.92 -39.59 -0.31 -1.38 16 19 C -0.09 -0.88 9.79 -39.56 -0.39 -1.26 16 20 C -0.09 -0.93 6.22 -39.52 -0.25 -1.18 16 21 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.84 16 22 C -0.09 -0.89 9.79 -39.56 -0.39 -1.28 16 23 C -0.09 -0.94 9.70 -39.59 -0.38 -1.33 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 26 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 31 H 0.03 0.51 8.12 -51.92 -0.42 0.09 16 32 H 0.08 1.12 6.37 -51.93 -0.33 0.79 16 33 H 0.06 0.76 5.91 -51.92 -0.31 0.45 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.93 7.87 -51.93 -0.41 0.52 16 36 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 37 H 0.13 1.09 8.00 -52.49 -0.42 0.67 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -29.47 343.68 -10.82 -40.29 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -6.28 Total: -3.53 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.12 Total: -21.08 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.29 Total: -34.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.47 -10.82 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.853 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds