Wall clock time and date at job start Tue Mar 31 2020 14:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46905 * 110.99837 * 293.95486 * 14 13 2 16 16 C 1.46905 * 111.00567 * 170.00024 * 14 13 2 17 17 C 1.50695 * 109.47434 * 189.99928 * 16 14 13 18 18 C 1.38239 * 119.98976 * 269.72424 * 17 16 14 19 19 C 1.38227 * 120.00688 * 179.76961 * 18 17 16 20 20 C 1.38320 * 119.99124 * 0.50135 * 19 18 17 21 21 Br 1.89092 * 120.01136 * 179.72420 * 20 19 18 22 22 C 1.38323 * 119.97751 * 359.75380 * 20 19 18 23 23 C 1.38216 * 119.99117 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 32 32 H 1.09003 * 109.47034 * 60.00137 * 15 14 13 33 33 H 1.09009 * 109.46956 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.47265 * 299.99320 * 15 14 13 35 35 H 1.08997 * 109.46495 * 310.00319 * 16 14 13 36 36 H 1.08999 * 109.46712 * 69.99812 * 16 14 13 37 37 H 1.07998 * 119.99814 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.00172 * 180.23280 * 19 18 17 39 39 H 1.08002 * 120.00330 * 179.97438 * 22 20 19 40 40 H 1.08005 * 119.99357 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.3341 1.3374 2.4894 16 6 1.9123 -0.7357 3.6672 17 6 1.2829 -0.0398 4.8463 18 6 2.0068 0.8929 5.5654 19 6 1.4282 1.5349 6.6441 20 6 0.1281 1.2366 7.0103 21 35 -0.6613 2.1090 8.4907 22 6 -0.5940 0.2995 6.2937 23 6 -0.0166 -0.3379 5.2117 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 2.9246 -1.8413 -4.7316 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 2.0678 1.9176 1.6059 33 1 2.0280 1.8785 3.3848 34 1 3.4126 1.1809 2.5100 35 1 1.4856 -1.7334 3.5638 36 1 2.9880 -0.8151 3.8239 37 1 3.0232 1.1228 5.2819 38 1 1.9926 2.2663 7.2036 39 1 -1.6090 0.0660 6.5795 40 1 -0.5803 -1.0700 4.6524 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602432672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:15 Heat of formation + Delta-G solvation = -1.025049 kcal Electronic energy + Delta-G solvation = -19164.306293 eV Core-core repulsion = 16216.878405 eV Total energy + Delta-G solvation = -2947.427888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59179 -38.83765 -36.20825 -34.27658 -33.14583 -32.02552 -30.80775 -28.94217 -28.19013 -27.21185 -25.31864 -23.74800 -23.23169 -21.69403 -20.46159 -18.50124 -17.56803 -16.85014 -16.72055 -16.33076 -16.22221 -15.78741 -15.28963 -14.96514 -14.45586 -14.29301 -14.16906 -13.97114 -13.72215 -13.28350 -13.13227 -12.77938 -12.73594 -12.60062 -12.48605 -12.21992 -12.15124 -12.03540 -11.86740 -11.71126 -11.36198 -11.24437 -11.04119 -10.88310 -10.51712 -9.94957 -9.60198 -9.18523 -8.16493 -6.25064 0.08802 0.37328 0.66120 1.40609 1.41251 1.52367 2.42364 2.55703 3.17028 3.21361 3.77553 3.83038 3.99376 4.09340 4.23293 4.30863 4.40946 4.50091 4.56393 4.57744 4.68273 4.72269 4.80869 4.93294 4.95361 4.99606 5.04546 5.13661 5.23867 5.25777 5.30973 5.49246 5.52730 5.57134 5.61537 5.82661 5.85649 5.91236 6.10097 6.18771 6.33701 6.90983 7.43030 8.95458 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.036586 B = 0.002104 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.127992 B =13301.866232 C =13548.146022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.073 3.927 14 N -0.535 5.535 15 C 0.020 3.980 16 C 0.089 3.911 17 C -0.062 4.062 18 C -0.111 4.111 19 C -0.096 4.096 20 C -0.103 4.103 21 Br -0.055 7.055 22 C -0.097 4.097 23 C -0.099 4.099 24 H 0.037 0.963 25 H 0.063 0.937 26 H 0.034 0.966 27 H -0.015 1.015 28 H -0.009 1.009 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 5.878 27.916 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.055 4.055 14 N -0.259 5.259 15 C -0.128 4.128 16 C -0.038 4.038 17 C -0.063 4.063 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.182 4.182 21 Br 0.031 6.969 22 C -0.116 4.116 23 C -0.118 4.118 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.004 0.996 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.573 6.177 28.323 29.519 hybrid contribution 1.065 -0.180 -1.463 1.818 sum -4.508 5.997 26.860 27.888 Atomic orbital electron populations 1.21460 0.94797 1.00399 1.00222 1.21020 0.96588 0.98482 0.92955 0.92880 1.19017 0.94060 0.94740 0.92685 1.21630 1.34276 1.08475 0.92114 0.92285 1.25925 0.95340 0.96093 1.02564 1.70093 1.40335 1.22920 1.24231 0.85543 0.78991 0.78424 0.78693 1.19959 1.20928 1.18828 1.22071 0.97059 0.97077 0.89282 1.61983 1.58487 1.04242 1.01148 1.22495 0.95981 0.91416 1.02871 1.21132 0.98682 0.96938 0.87093 1.19949 0.94575 0.96383 0.95349 1.21259 1.00813 0.95976 0.94956 1.21254 0.93296 0.99794 0.97208 1.21930 0.97084 1.01764 0.97465 1.96705 1.82472 1.78102 1.39669 1.21286 1.00464 0.95017 0.94875 1.21225 0.94546 1.00002 0.96067 0.94354 0.91779 0.94678 0.99616 0.99015 0.92974 0.91039 0.95902 0.92109 0.90182 0.95451 0.89217 0.93218 0.84166 0.83771 0.83928 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 8.89 71.98 0.64 -3.57 16 2 C -0.07 -2.88 2.26 -10.79 -0.02 -2.90 16 3 H 0.05 2.17 6.34 -2.39 -0.02 2.16 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.72 8.41 25.60 0.22 -29.50 16 6 H 0.06 3.22 7.06 -2.91 -0.02 3.20 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 8 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 9 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.07 2.39 4.35 86.30 0.38 2.76 16 14 N -0.53 -14.25 4.21 -927.03 -3.90 -18.15 16 15 C 0.02 0.51 8.99 127.69 1.15 1.66 16 16 C 0.09 1.88 5.12 85.55 0.44 2.32 16 17 C -0.06 -1.19 4.88 -19.87 -0.10 -1.29 16 18 C -0.11 -1.91 7.92 22.27 0.18 -1.74 16 19 C -0.10 -1.61 9.79 22.29 0.22 -1.39 16 20 C -0.10 -1.84 6.22 22.31 0.14 -1.70 16 21 Br -0.05 -0.90 33.70 -20.37 -0.69 -1.58 16 22 C -0.10 -1.70 9.79 22.28 0.22 -1.49 16 23 C -0.10 -1.84 9.70 22.26 0.22 -1.62 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 2.13 7.75 -2.39 -0.02 2.12 16 26 H 0.03 1.43 6.95 -2.39 -0.02 1.41 16 27 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 31 H 0.02 0.78 8.12 -2.38 -0.02 0.76 16 32 H 0.06 1.71 6.37 -2.39 -0.02 1.70 16 33 H 0.08 1.74 5.91 -2.38 -0.01 1.72 16 34 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 1.81 7.87 -2.39 -0.02 1.79 16 36 H 0.05 1.00 8.06 -2.39 -0.02 0.98 16 37 H 0.14 2.03 8.00 -2.91 -0.02 2.01 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -62.72 343.68 2.98 -59.73 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.00 Total: 6.49 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 4.26 Total: -36.29 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -3.62 Total: -74.87 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 35 Polarization: -0.90 SS G_CDS: -0.69 Total: -1.58 kcal Total: -62.72 2.98 -59.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602432672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.706 kcal (2) G-P(sol) polarization free energy of solvation -62.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds