Wall clock time and date at job start Tue Mar 31 2020 14:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46974 * 2 1 4 4 C 1.53001 * 109.47190 * 120.00169 * 2 1 3 5 5 C 1.50693 * 109.47190 * 295.00217 * 4 2 1 6 6 H 1.08003 * 120.00116 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00224 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99494 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46789 * 90.00381 * 9 7 5 11 11 H 1.48501 * 109.46936 * 209.99826 * 9 7 5 12 12 H 1.48491 * 109.47406 * 330.00140 * 9 7 5 13 13 C 1.53000 * 109.47042 * 240.00214 * 2 1 3 14 14 N 1.46903 * 109.46932 * 65.00099 * 13 2 1 15 15 C 1.46893 * 111.00228 * 66.04561 * 14 13 2 16 16 C 1.46904 * 110.99834 * 190.00100 * 14 13 2 17 17 C 1.50698 * 109.47074 * 169.99909 * 16 14 13 18 18 C 1.38245 * 120.00747 * 104.99772 * 17 16 14 19 19 C 1.38217 * 120.01087 * 179.72499 * 18 17 16 20 20 C 1.38260 * 120.02131 * 0.02562 * 19 18 17 21 21 C 1.38194 * 120.00900 * 359.97438 * 20 19 18 22 22 C 1.38308 * 120.00716 * 284.72312 * 17 16 14 23 23 Br 1.89099 * 120.00648 * 0.27492 * 22 17 16 24 24 H 1.09003 * 109.47556 * 59.99901 * 1 2 3 25 25 H 1.08999 * 109.46974 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47009 * 299.99415 * 1 2 3 27 27 H 1.08999 * 109.46542 * 55.00321 * 4 2 1 28 28 H 1.08997 * 109.47037 * 175.00116 * 4 2 1 29 29 H 0.97001 * 120.00031 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47142 * 305.00264 * 13 2 1 31 31 H 1.09001 * 109.47032 * 184.99364 * 13 2 1 32 32 H 1.09002 * 109.47338 * 183.95514 * 15 14 13 33 33 H 1.09006 * 109.47019 * 303.94845 * 15 14 13 34 34 H 1.08996 * 109.47609 * 63.95151 * 15 14 13 35 35 H 1.08999 * 109.47244 * 49.99697 * 16 14 13 36 36 H 1.08997 * 109.46831 * 289.99717 * 16 14 13 37 37 H 1.08000 * 119.99338 * 359.74108 * 18 17 16 38 38 H 1.08001 * 119.98505 * 180.02562 * 19 18 17 39 39 H 1.08002 * 119.99487 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00347 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0806 0.9744 2.3757 7 6 1.9933 -0.4019 3.7283 8 7 2.6773 -1.5183 3.8509 9 14 1.4996 0.5632 5.2496 10 1 0.1726 0.0949 5.7237 11 1 2.5093 0.3533 6.3181 12 1 1.4246 2.0083 4.9164 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0376 -2.4456 15 6 2.3340 1.3375 -2.4894 16 6 1.9124 -0.7356 -3.6672 17 6 1.2829 -0.0395 -4.8463 18 6 2.0744 0.6528 -5.7438 19 6 1.4977 1.2864 -6.8284 20 6 0.1291 1.2286 -7.0160 21 6 -0.6628 0.5368 -6.1194 22 6 -0.0861 -0.0980 -5.0340 23 35 -1.1693 -1.0448 -3.8068 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6054 -1.7198 1.2950 28 1 3.1263 -0.7995 1.2055 29 1 2.9246 -1.8413 4.7315 30 1 1.6053 -1.7197 -1.2952 31 1 3.1263 -0.7993 -1.2057 32 1 1.9759 1.9073 -3.3468 33 1 2.1238 1.8893 -1.5731 34 1 3.4088 1.1807 -2.5807 35 1 1.4856 -1.7332 -3.5639 36 1 2.9881 -0.8149 -3.8239 37 1 3.1434 0.6983 -5.5975 38 1 2.1165 1.8268 -7.5295 39 1 -0.3210 1.7243 -7.8635 40 1 -1.7318 0.4914 -6.2664 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602435982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:22 Heat of formation + Delta-G solvation = 1.950462 kcal Electronic energy + Delta-G solvation = -19619.049679 eV Core-core repulsion = 16671.750818 eV Total energy + Delta-G solvation = -2947.298861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54119 -38.80744 -36.16623 -34.18756 -33.17387 -32.26780 -30.10106 -28.95255 -28.23070 -27.40309 -25.38001 -23.37146 -23.35498 -21.64699 -20.45229 -18.49947 -17.56059 -16.84409 -16.78246 -16.31679 -16.11992 -15.79596 -15.20558 -14.91196 -14.36752 -14.28418 -14.19210 -13.84296 -13.66541 -13.27682 -13.12309 -12.73774 -12.69672 -12.59915 -12.47703 -12.22532 -12.17859 -11.96173 -11.90432 -11.64833 -11.34560 -11.02915 -10.92118 -10.84844 -10.51651 -9.82415 -9.53642 -9.13916 -8.16251 -6.24911 0.21429 0.35494 0.89632 1.40151 1.41190 1.52082 2.42586 2.64932 3.17064 3.17818 3.74911 3.86567 4.10045 4.14992 4.29645 4.31108 4.46766 4.48707 4.57976 4.58073 4.66605 4.73754 4.82616 4.93893 4.95926 5.00490 5.03776 5.15256 5.31287 5.34658 5.45846 5.50854 5.51866 5.53545 5.58779 5.83411 5.91374 5.93572 6.12318 6.22112 6.34189 6.90986 7.43064 8.95850 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.003392 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.424375 B = 8252.332999 C = 8863.456915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.069 4.069 3 H 0.055 0.945 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.076 3.924 14 N -0.525 5.525 15 C 0.027 3.973 16 C 0.087 3.913 17 C -0.063 4.063 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.115 4.115 21 C -0.105 4.105 22 C -0.086 4.086 23 Br -0.055 7.055 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.033 0.967 27 H -0.012 1.012 28 H -0.014 1.014 29 H 0.261 0.739 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 4.907 -26.058 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.003 4.003 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.051 4.051 14 N -0.249 5.249 15 C -0.121 4.121 16 C -0.040 4.040 17 C -0.065 4.065 18 C -0.134 4.134 19 C -0.123 4.123 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.166 4.166 23 Br 0.031 6.969 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.007 0.993 28 H 0.004 0.996 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.823 4.517 -25.433 26.479 hybrid contribution 1.046 0.001 1.017 1.459 sum -4.777 4.518 -24.416 25.286 Atomic orbital electron populations 1.21418 0.94880 1.00013 1.00126 1.21000 0.96475 0.98452 0.92835 0.92713 1.18996 0.94003 0.94597 0.92719 1.21627 1.34237 1.08509 0.92101 0.92266 1.25932 0.95285 0.96118 1.02571 1.70100 1.40315 1.23009 1.24205 0.85529 0.77969 0.79334 0.78734 1.19997 1.20881 1.18762 1.22004 0.96797 0.96895 0.89422 1.61944 1.58254 1.03985 1.00704 1.22400 0.95912 0.91298 1.02526 1.21125 0.98450 0.96849 0.87599 1.19720 0.92082 0.98414 0.96279 1.21308 1.00475 0.97107 0.94510 1.21583 0.95480 0.98036 0.97244 1.21500 0.93911 0.98453 0.99484 1.21355 1.01205 0.96779 0.93159 1.21871 0.94055 1.03604 0.97040 1.96745 1.66584 1.73707 1.59910 0.91726 0.94980 0.94767 0.99333 0.99605 0.92986 0.91753 0.95973 0.90821 0.92006 0.95429 0.90143 0.93099 0.84258 0.82765 0.82610 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.29 8.89 71.98 0.64 -3.65 16 2 C -0.07 -2.89 2.26 -10.79 -0.02 -2.92 16 3 H 0.05 2.32 6.26 -2.39 -0.01 2.30 16 4 C 0.03 1.84 4.45 29.85 0.13 1.98 16 5 C -0.53 -30.31 8.41 25.60 0.22 -30.09 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.08 2.70 4.35 86.30 0.38 3.07 16 14 N -0.53 -15.22 3.97 -927.05 -3.68 -18.90 16 15 C 0.03 0.71 9.15 127.69 1.17 1.88 16 16 C 0.09 2.15 4.36 85.56 0.37 2.53 16 17 C -0.06 -1.37 4.42 -19.85 -0.09 -1.46 16 18 C -0.11 -1.94 9.13 22.27 0.20 -1.74 16 19 C -0.11 -1.39 10.05 22.27 0.22 -1.17 16 20 C -0.11 -1.55 10.05 22.26 0.22 -1.32 16 21 C -0.11 -1.88 9.79 22.28 0.22 -1.67 16 22 C -0.09 -1.93 6.22 22.31 0.14 -1.79 16 23 Br -0.06 -1.41 31.93 -20.37 -0.65 -2.06 16 24 H 0.06 2.33 7.75 -2.39 -0.02 2.31 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.03 1.45 6.95 -2.39 -0.02 1.44 16 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 31 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 32 H 0.07 1.75 6.88 -2.39 -0.02 1.73 16 33 H 0.06 1.83 6.21 -2.38 -0.01 1.81 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 2.11 7.19 -2.39 -0.02 2.09 16 36 H 0.05 1.15 7.93 -2.39 -0.02 1.14 16 37 H 0.14 1.94 8.00 -2.91 -0.02 1.91 16 38 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -65.66 342.34 3.25 -62.42 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.00 Total: 4.96 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.26 Total: -36.00 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -3.39 Total: -76.54 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 35 Polarization: -1.41 SS G_CDS: -0.65 Total: -2.06 kcal Total: -65.66 3.25 -62.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602435982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.366 kcal (2) G-P(sol) polarization free energy of solvation -65.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds