Wall clock time and date at job start Tue Mar 31 2020 14:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.53003 * 109.47253 * 239.99915 * 2 1 3 5 5 C 1.50696 * 109.47095 * 65.00006 * 4 2 1 6 6 H 1.08008 * 120.00288 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00028 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99981 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99702 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46915 * 90.00373 * 9 7 5 11 11 H 1.48507 * 109.46998 * 209.99684 * 9 7 5 12 12 H 1.48497 * 109.47529 * 329.99945 * 9 7 5 13 13 C 1.52995 * 109.47157 * 119.99557 * 2 1 3 14 14 N 1.46908 * 109.47393 * 183.13000 * 13 2 1 15 15 C 1.46900 * 110.99539 * 72.32764 * 14 13 2 16 16 C 1.46900 * 110.99867 * 196.28260 * 14 13 2 17 17 C 1.50701 * 109.46583 * 170.00229 * 16 14 13 18 18 C 1.38261 * 119.99438 * 269.71945 * 17 16 14 19 19 C 1.38216 * 120.01976 * 180.28257 * 18 17 16 20 20 C 1.38238 * 120.01411 * 359.97438 * 19 18 17 21 21 C 1.38311 * 119.98697 * 0.02562 * 20 19 18 22 22 Br 1.89099 * 120.00790 * 180.02562 * 21 20 19 23 23 C 1.38196 * 119.99480 * 90.00160 * 17 16 14 24 24 H 1.09008 * 109.46946 * 54.47489 * 1 2 3 25 25 H 1.08999 * 109.47200 * 174.47087 * 1 2 3 26 26 H 1.09002 * 109.47106 * 294.47932 * 1 2 3 27 27 H 1.09005 * 109.46969 * 185.00161 * 4 2 1 28 28 H 1.08997 * 109.46884 * 305.00139 * 4 2 1 29 29 H 0.96997 * 120.00266 * 180.02562 * 8 7 5 30 30 H 1.09008 * 109.46914 * 63.13450 * 13 2 1 31 31 H 1.08996 * 109.47806 * 303.13504 * 13 2 1 32 32 H 1.09001 * 109.46980 * 188.29123 * 15 14 13 33 33 H 1.08999 * 109.47077 * 308.28731 * 15 14 13 34 34 H 1.08991 * 109.47067 * 68.28860 * 15 14 13 35 35 H 1.08996 * 109.47188 * 50.00124 * 16 14 13 36 36 H 1.09004 * 109.46567 * 289.99643 * 16 14 13 37 37 H 1.08003 * 119.99127 * 0.28057 * 18 17 16 38 38 H 1.08003 * 119.99448 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.00818 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.00782 * 359.69559 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 1.6449 0.2771 -4.7994 9 14 2.9628 -1.9889 -3.9027 10 1 2.0235 -3.1333 -4.0189 11 1 3.8109 -1.9192 -5.1198 12 1 3.8252 -2.1756 -2.7084 13 6 2.0400 -0.7211 1.2493 14 7 3.5071 -0.6560 1.2877 15 6 3.9653 0.7002 1.6177 16 6 4.0532 -1.6405 2.2314 17 6 5.5492 -1.7176 2.0671 18 6 6.1010 -2.6185 1.1751 19 6 7.4733 -2.6937 1.0282 20 6 8.2947 -1.8679 1.7727 21 6 7.7432 -0.9665 2.6650 22 35 8.8663 0.1640 3.6831 23 6 6.3696 -0.8919 2.8121 24 1 -0.3633 0.5972 -0.8364 25 1 -0.3633 -1.0229 -0.0990 26 1 -0.3633 0.4258 0.9353 27 1 3.1264 -0.7995 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 1.8915 -0.0461 -5.6800 30 1 1.7232 -1.7638 1.2216 31 1 1.6316 -0.2408 2.1384 32 1 5.0469 0.7579 1.4960 33 1 3.4860 1.4177 0.9517 34 1 3.7029 0.9311 2.6500 35 1 3.6147 -2.6180 2.0310 36 1 3.8148 -1.3374 3.2510 37 1 5.4596 -3.2636 0.5930 38 1 7.9039 -3.3973 0.3311 39 1 9.3670 -1.9270 1.6581 40 1 5.9385 -0.1880 3.5085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602442117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:24 Heat of formation + Delta-G solvation = 18.763201 kcal Electronic energy + Delta-G solvation = -19669.231081 eV Core-core repulsion = 16722.661275 eV Total energy + Delta-G solvation = -2946.569805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69851 -37.62585 -34.62021 -32.58453 -32.11060 -31.24654 -29.43700 -27.71184 -27.17468 -26.25757 -23.20098 -22.56324 -21.95755 -20.73734 -18.83774 -16.92598 -16.66514 -15.79001 -15.57918 -15.32343 -14.71354 -14.22782 -13.98601 -13.60334 -13.49002 -13.11223 -12.94376 -12.58428 -12.35566 -12.06117 -11.70418 -11.59713 -11.39489 -11.25899 -11.16202 -11.00651 -10.94987 -10.76032 -10.48347 -10.34145 -9.69760 -9.63416 -9.38376 -9.04835 -8.92560 -8.78179 -8.42190 -7.99050 -5.93334 -3.88653 1.00123 1.13509 1.45701 3.38064 3.44309 3.45421 3.52719 4.28411 4.56263 4.59785 4.66687 4.89628 5.11876 5.18987 5.28820 5.39265 5.43331 5.44884 5.58141 5.63029 5.74740 5.78685 5.88231 5.97180 6.02248 6.16780 6.19976 6.22235 6.27703 6.41307 6.46548 6.68100 6.84825 6.97116 7.12586 7.28535 7.36007 7.52645 7.71907 7.95318 8.66887 9.12843 9.71075 11.20479 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.003337 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.853949 B = 8389.191854 C = 9101.042990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 H 0.062 0.938 4 C -0.001 4.001 5 C -0.511 4.511 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.910 5.910 9 Si 0.876 3.124 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.261 1.261 13 C 0.061 3.939 14 N -0.527 5.527 15 C 0.023 3.977 16 C 0.092 3.908 17 C -0.064 4.064 18 C -0.080 4.080 19 C -0.114 4.114 20 C -0.095 4.095 21 C -0.092 4.092 22 Br -0.060 7.060 23 C -0.085 4.085 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.003 0.997 29 H 0.260 0.740 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.018 0.982 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.546 -4.327 20.111 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.038 4.038 5 C -0.549 4.549 6 H 0.087 0.913 7 C -0.136 4.136 8 N -0.550 5.550 9 Si 0.704 3.296 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.185 1.185 13 C -0.066 4.066 14 N -0.251 5.251 15 C -0.125 4.125 16 C -0.036 4.036 17 C -0.066 4.066 18 C -0.099 4.099 19 C -0.133 4.133 20 C -0.115 4.115 21 C -0.171 4.171 22 Br 0.025 6.975 23 C -0.105 4.105 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.142 -4.014 19.844 24.696 hybrid contribution -0.013 -0.806 0.207 0.832 sum 14.130 -4.820 20.051 24.999 Atomic orbital electron populations 1.21702 0.95952 1.01351 1.00096 1.21036 0.94510 0.99373 0.94374 0.91996 1.19527 0.97196 0.94775 0.92320 1.21238 1.34808 1.09399 0.89482 0.91264 1.25007 0.95711 0.96923 0.95964 1.69923 1.47689 1.39422 0.97944 0.86818 0.80767 0.84352 0.77679 1.20678 1.21789 1.18526 1.22337 0.85471 1.00931 0.97877 1.61918 1.09850 1.04724 1.48563 1.22476 1.01265 0.90399 0.98403 1.21094 0.90178 0.97802 0.94498 1.19806 0.95472 0.95459 0.95820 1.21254 0.94996 0.97590 0.96030 1.21182 0.93566 0.99293 0.99261 1.21074 1.00307 0.94902 0.95239 1.21694 0.93978 1.00096 1.01315 1.96691 1.65456 1.64605 1.70719 1.20990 0.91197 0.98738 0.99597 0.91516 0.93562 0.95088 0.94952 0.97840 0.93026 0.91392 0.95748 0.91673 0.90437 0.96308 0.89705 0.94182 0.85062 0.85108 0.85283 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.91 37.16 0.33 -2.08 16 2 C -0.07 -1.43 2.34 -90.62 -0.21 -1.64 16 3 H 0.06 1.25 6.54 -51.93 -0.34 0.91 16 4 C 0.00 -0.02 3.45 -27.88 -0.10 -0.12 16 5 C -0.51 -14.51 9.03 -34.44 -0.31 -14.82 16 6 H 0.07 2.11 7.31 -52.48 -0.38 1.73 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 9 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.06 0.96 4.39 -3.82 -0.02 0.94 16 14 N -0.53 -8.05 3.99 -244.37 -0.98 -9.03 16 15 C 0.02 0.32 8.89 60.06 0.53 0.86 16 16 C 0.09 1.14 5.11 -4.98 -0.03 1.11 16 17 C -0.06 -0.79 4.88 -104.63 -0.51 -1.30 16 18 C -0.08 -0.97 9.70 -39.58 -0.38 -1.35 16 19 C -0.11 -1.24 10.05 -39.59 -0.40 -1.64 16 20 C -0.10 -1.02 9.79 -39.55 -0.39 -1.41 16 21 C -0.09 -1.04 6.22 -39.51 -0.25 -1.29 16 22 Br -0.06 -0.62 33.70 -68.01 -2.29 -2.91 16 23 C -0.08 -0.99 7.82 -39.56 -0.31 -1.30 16 24 H 0.07 1.35 7.12 -51.92 -0.37 0.98 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.80 6.61 -51.93 -0.34 0.46 16 28 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.07 1.03 7.80 -51.92 -0.41 0.62 16 31 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 32 H 0.06 0.92 6.45 -51.93 -0.34 0.58 16 33 H 0.08 1.20 6.41 -51.93 -0.33 0.87 16 34 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 35 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 36 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 37 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.13 1.37 8.03 -52.49 -0.42 0.94 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -30.90 340.50 -10.43 -41.33 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.26 Total: -2.04 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -2.13 Total: -22.26 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.20 Total: -36.72 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.90 -10.43 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602442117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.093 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds