Wall clock time and date at job start Tue Mar 31 2020 14:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.53003 * 109.47253 * 239.99915 * 2 1 3 5 5 C 1.50696 * 109.47095 * 65.00006 * 4 2 1 6 6 H 1.08008 * 120.00288 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00028 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99981 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99702 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46915 * 90.00373 * 9 7 5 11 11 H 1.48507 * 109.46998 * 209.99684 * 9 7 5 12 12 H 1.48497 * 109.47529 * 329.99945 * 9 7 5 13 13 C 1.52995 * 109.47157 * 119.99557 * 2 1 3 14 14 N 1.46908 * 109.47393 * 183.13000 * 13 2 1 15 15 C 1.46900 * 110.99539 * 72.32764 * 14 13 2 16 16 C 1.46900 * 110.99867 * 196.28260 * 14 13 2 17 17 C 1.50701 * 109.46583 * 170.00229 * 16 14 13 18 18 C 1.38261 * 119.99438 * 269.71945 * 17 16 14 19 19 C 1.38216 * 120.01976 * 180.28257 * 18 17 16 20 20 C 1.38238 * 120.01411 * 359.97438 * 19 18 17 21 21 C 1.38311 * 119.98697 * 0.02562 * 20 19 18 22 22 Br 1.89099 * 120.00790 * 180.02562 * 21 20 19 23 23 C 1.38196 * 119.99480 * 90.00160 * 17 16 14 24 24 H 1.09008 * 109.46946 * 54.47489 * 1 2 3 25 25 H 1.08999 * 109.47200 * 174.47087 * 1 2 3 26 26 H 1.09002 * 109.47106 * 294.47932 * 1 2 3 27 27 H 1.09005 * 109.46969 * 185.00161 * 4 2 1 28 28 H 1.08997 * 109.46884 * 305.00139 * 4 2 1 29 29 H 0.96997 * 120.00266 * 180.02562 * 8 7 5 30 30 H 1.09008 * 109.46914 * 63.13450 * 13 2 1 31 31 H 1.08996 * 109.47806 * 303.13504 * 13 2 1 32 32 H 1.09001 * 109.46980 * 188.29123 * 15 14 13 33 33 H 1.08999 * 109.47077 * 308.28731 * 15 14 13 34 34 H 1.08991 * 109.47067 * 68.28860 * 15 14 13 35 35 H 1.08996 * 109.47188 * 50.00124 * 16 14 13 36 36 H 1.09004 * 109.46567 * 289.99643 * 16 14 13 37 37 H 1.08003 * 119.99127 * 0.28057 * 18 17 16 38 38 H 1.08003 * 119.99448 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.00818 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.00782 * 359.69559 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 1.6449 0.2771 -4.7994 9 14 2.9628 -1.9889 -3.9027 10 1 2.0235 -3.1333 -4.0189 11 1 3.8109 -1.9192 -5.1198 12 1 3.8252 -2.1756 -2.7084 13 6 2.0400 -0.7211 1.2493 14 7 3.5071 -0.6560 1.2877 15 6 3.9653 0.7002 1.6177 16 6 4.0532 -1.6405 2.2314 17 6 5.5492 -1.7176 2.0671 18 6 6.1010 -2.6185 1.1751 19 6 7.4733 -2.6937 1.0282 20 6 8.2947 -1.8679 1.7727 21 6 7.7432 -0.9665 2.6650 22 35 8.8663 0.1640 3.6831 23 6 6.3696 -0.8919 2.8121 24 1 -0.3633 0.5972 -0.8364 25 1 -0.3633 -1.0229 -0.0990 26 1 -0.3633 0.4258 0.9353 27 1 3.1264 -0.7995 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 1.8915 -0.0461 -5.6800 30 1 1.7232 -1.7638 1.2216 31 1 1.6316 -0.2408 2.1384 32 1 5.0469 0.7579 1.4960 33 1 3.4860 1.4177 0.9517 34 1 3.7029 0.9311 2.6500 35 1 3.6147 -2.6180 2.0310 36 1 3.8148 -1.3374 3.2510 37 1 5.4596 -3.2636 0.5930 38 1 7.9039 -3.3973 0.3311 39 1 9.3670 -1.9270 1.6581 40 1 5.9385 -0.1880 3.5085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602442117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:24 Heat of formation + Delta-G solvation = 2.089016 kcal Electronic energy + Delta-G solvation = -19669.954127 eV Core-core repulsion = 16722.661275 eV Total energy + Delta-G solvation = -2947.292852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58370 -38.82484 -36.13396 -34.24271 -33.32576 -32.28731 -30.27575 -29.62931 -28.22339 -27.44981 -24.79785 -23.44366 -23.38550 -21.67895 -20.41632 -18.87898 -17.71452 -16.82147 -16.73215 -16.30220 -16.23356 -15.60662 -15.16663 -15.04234 -14.59837 -14.43259 -14.03714 -13.97520 -13.71790 -13.61796 -13.05981 -12.80493 -12.75675 -12.62191 -12.50185 -12.29885 -12.03695 -11.91182 -11.77270 -11.65151 -11.36160 -11.26607 -11.10503 -10.91092 -10.67087 -9.89298 -9.63819 -9.09283 -8.20897 -6.21054 0.14436 0.29553 0.62953 1.37515 1.40651 1.54421 2.43064 2.56614 3.15913 3.23961 3.72500 3.85352 4.05041 4.11004 4.26206 4.31292 4.35387 4.46150 4.51052 4.55843 4.59800 4.72594 4.80952 4.82451 4.90978 4.93149 4.98678 5.10822 5.17973 5.20020 5.37616 5.40846 5.51496 5.57745 5.66560 5.76549 5.84178 5.85643 6.20527 6.25902 6.41931 6.87280 7.42371 8.96198 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.003337 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.853949 B = 8389.191854 C = 9101.042990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 H 0.046 0.954 4 C 0.008 3.992 5 C -0.515 4.515 6 H 0.030 0.970 7 C 0.000 4.000 8 N -0.959 5.959 9 Si 0.945 3.055 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.244 1.244 13 C 0.072 3.928 14 N -0.551 5.551 15 C 0.028 3.972 16 C 0.096 3.904 17 C -0.075 4.075 18 C -0.096 4.096 19 C -0.117 4.117 20 C -0.099 4.099 21 C -0.103 4.103 22 Br -0.053 7.053 23 C -0.089 4.089 24 H 0.032 0.968 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.025 0.975 28 H 0.007 0.993 29 H 0.262 0.738 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.630 -6.056 22.041 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.064 0.936 4 C -0.029 4.029 5 C -0.553 4.553 6 H 0.048 0.952 7 C -0.195 4.195 8 N -0.601 5.601 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.167 1.167 13 C -0.055 4.055 14 N -0.275 5.275 15 C -0.120 4.120 16 C -0.031 4.031 17 C -0.077 4.077 18 C -0.115 4.115 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.182 4.182 22 Br 0.032 6.968 23 C -0.110 4.110 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 15.226 -5.743 21.804 27.207 hybrid contribution -0.351 -0.169 -0.383 0.547 sum 14.875 -5.912 21.421 26.741 Atomic orbital electron populations 1.21627 0.95205 1.01340 1.00455 1.20945 0.95211 0.98506 0.94473 0.93578 1.19402 0.96678 0.94546 0.92266 1.21608 1.33602 1.08426 0.91644 0.95162 1.25967 0.97097 1.00889 0.95593 1.70086 1.49647 1.41729 0.98618 0.85716 0.79465 0.79755 0.78099 1.19428 1.21718 1.16719 1.22131 0.86022 1.01044 0.96351 1.61826 1.09592 1.05595 1.50450 1.22385 1.00848 0.89739 0.99060 1.21107 0.90117 0.97276 0.94639 1.19868 0.95555 0.95942 0.96318 1.21427 0.95736 0.97945 0.96347 1.21445 0.93209 0.99495 0.99399 1.21338 1.01282 0.94459 0.94771 1.21879 0.94204 1.00458 1.01657 1.96694 1.65136 1.64402 1.70535 1.21088 0.91380 0.98780 0.99715 0.94926 0.92939 0.91721 0.95628 0.97449 0.92958 0.90362 0.93464 0.91888 0.92556 0.94201 0.88999 0.92543 0.85012 0.83119 0.83642 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.91 71.98 0.64 -3.90 16 2 C -0.07 -2.73 2.34 -10.80 -0.03 -2.75 16 3 H 0.05 1.87 6.54 -2.39 -0.02 1.85 16 4 C 0.01 0.40 3.45 29.85 0.10 0.50 16 5 C -0.51 -29.95 9.03 25.60 0.23 -29.72 16 6 H 0.03 1.94 7.31 -2.91 -0.02 1.92 16 7 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 8 N -0.96 -61.67 13.96 21.45 0.30 -61.37 16 9 Si 0.95 45.60 27.47 68.60 1.88 47.48 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.24 -10.99 6.54 99.48 0.65 -10.34 16 13 C 0.07 2.05 4.39 86.30 0.38 2.43 16 14 N -0.55 -15.59 3.99 -927.04 -3.70 -19.29 16 15 C 0.03 0.74 8.89 127.69 1.13 1.88 16 16 C 0.10 2.11 5.11 85.56 0.44 2.55 16 17 C -0.08 -1.70 4.88 -19.87 -0.10 -1.80 16 18 C -0.10 -2.14 9.70 22.27 0.22 -1.92 16 19 C -0.12 -2.28 10.05 22.26 0.22 -2.06 16 20 C -0.10 -1.91 9.79 22.29 0.22 -1.69 16 21 C -0.10 -2.15 6.22 22.31 0.14 -2.01 16 22 Br -0.05 -1.00 33.70 -20.37 -0.69 -1.69 16 23 C -0.09 -1.91 7.82 22.29 0.17 -1.73 16 24 H 0.03 1.34 7.12 -2.38 -0.02 1.32 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.03 1.23 6.61 -2.38 -0.02 1.22 16 28 H 0.01 0.33 7.57 -2.39 -0.02 0.31 16 29 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.08 2.09 7.80 -2.38 -0.02 2.08 16 31 H 0.05 1.16 8.05 -2.39 -0.02 1.14 16 32 H 0.06 1.69 6.45 -2.39 -0.02 1.68 16 33 H 0.06 1.73 6.41 -2.39 -0.02 1.71 16 34 H 0.04 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.09 1.88 7.80 -2.39 -0.02 1.86 16 36 H 0.06 1.06 8.02 -2.38 -0.02 1.04 16 37 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.13 2.59 8.03 -2.91 -0.02 2.57 16 Total: -1.00 -67.47 340.50 2.98 -64.49 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.95 Total: 10.15 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 4.24 Total: -39.78 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -3.40 Total: -80.66 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -0.69 Total: -1.69 kcal Total: -67.47 2.98 -64.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602442117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.579 kcal (2) G-P(sol) polarization free energy of solvation -67.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds