Wall clock time and date at job start Tue Mar 31 2020 14:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47203 * 90.00043 * 9 7 5 11 11 H 1.48495 * 109.47415 * 210.00145 * 9 7 5 12 12 H 1.48498 * 109.47390 * 330.00270 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 H 1.08994 * 109.46818 * 35.00369 * 15 14 13 17 17 C 1.52993 * 109.47308 * 275.00154 * 15 14 13 18 18 C 1.50695 * 109.46760 * 155.00092 * 15 14 13 19 19 C 1.38243 * 119.99155 * 39.72661 * 18 15 14 20 20 C 1.38220 * 120.00866 * 179.76351 * 19 18 15 21 21 C 1.38324 * 119.99124 * 0.51334 * 20 19 18 22 22 Br 1.89099 * 120.01302 * 179.72420 * 21 20 19 23 23 C 1.38334 * 119.97936 * 359.73852 * 21 20 19 24 24 C 1.38213 * 119.98860 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 26 26 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 28 28 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 29 29 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 30 30 H 0.97000 * 120.00592 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 32 32 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 33 33 H 1.00908 * 110.99847 * 56.04959 * 14 13 2 34 34 H 1.08999 * 109.47404 * 180.02562 * 17 15 14 35 35 H 1.09004 * 109.47538 * 300.00000 * 17 15 14 36 36 H 1.09001 * 109.46997 * 59.99957 * 17 15 14 37 37 H 1.08000 * 119.99561 * 0.02562 * 19 18 15 38 38 H 1.08006 * 120.00818 * 180.27914 * 20 19 18 39 39 H 1.08000 * 120.00654 * 179.97438 * 23 21 20 40 40 H 1.07996 * 119.99645 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6765 -1.5186 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.5650 1.5431 -5.5817 11 1 1.3130 -0.3703 -6.3891 12 1 0.2283 1.2846 -4.9874 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 3.0883 -1.0985 3.4742 17 6 1.1123 -1.6917 4.0938 18 6 2.2756 0.3920 4.7671 19 6 1.3382 1.3979 4.9104 20 6 1.4735 2.3299 5.9221 21 6 2.5528 2.2623 6.7847 22 35 2.7427 3.5417 8.1642 23 6 3.4934 1.2587 6.6376 24 6 3.3546 0.3243 5.6287 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1264 -0.7993 -1.2056 29 1 1.6055 -1.7198 -1.2951 30 1 2.9239 -1.8416 -4.7317 31 1 3.1264 -0.7993 1.2056 32 1 1.6054 -1.7197 1.2951 33 1 0.6528 0.1793 2.4753 34 1 1.4633 -2.1845 5.0004 35 1 0.1487 -1.2202 4.2868 36 1 1.0032 -2.4288 3.2982 37 1 0.4977 1.4530 4.2344 38 1 0.7387 3.1131 6.0369 39 1 4.3364 1.2058 7.3106 40 1 4.0886 -0.4596 5.5141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602503385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:54 Heat of formation + Delta-G solvation = 2.634565 kcal Electronic energy + Delta-G solvation = -19014.645172 eV Core-core repulsion = 16067.375976 eV Total energy + Delta-G solvation = -2947.269196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77250 -37.32350 -34.90767 -32.64402 -31.79285 -31.22860 -29.88679 -28.39736 -26.82431 -25.37307 -23.58903 -23.04451 -22.09389 -20.52764 -19.05397 -17.04335 -16.39034 -15.74103 -15.45812 -15.06875 -14.62001 -14.22672 -14.07369 -13.67439 -13.60003 -13.36328 -12.86206 -12.59918 -12.55771 -12.08595 -11.79881 -11.75674 -11.40347 -11.25833 -11.03446 -10.90765 -10.87408 -10.74791 -10.49760 -10.34133 -10.21445 -9.74720 -9.18872 -9.17654 -8.98777 -8.71538 -8.33660 -8.20486 -5.98381 -3.99504 0.92982 1.15870 1.43296 3.32789 3.39141 3.42063 3.44396 4.26226 4.48140 4.61148 4.68451 4.72294 5.02169 5.11620 5.22449 5.26143 5.37542 5.48432 5.57994 5.60919 5.74691 5.78063 5.82304 5.93967 6.02083 6.03402 6.10252 6.25293 6.38697 6.44943 6.53071 6.64831 6.91898 7.08800 7.15118 7.30912 7.56963 7.68818 7.84467 8.01711 8.45502 9.06832 9.63992 11.13133 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.002151 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.169738 B =13016.797599 C =13518.462589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.682 5.682 15 C 0.115 3.885 16 H 0.088 0.912 17 C -0.177 4.177 18 C -0.043 4.043 19 C -0.092 4.092 20 C -0.092 4.092 21 C -0.097 4.097 22 Br -0.062 7.062 23 C -0.091 4.091 24 C -0.112 4.112 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.031 0.969 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.339 0.661 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 5.316 26.645 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.313 5.313 15 C 0.005 3.995 16 H 0.106 0.894 17 C -0.236 4.236 18 C -0.044 4.044 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.176 4.176 22 Br 0.023 6.977 23 C -0.111 4.111 24 C -0.132 4.132 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.473 6.103 26.979 27.664 hybrid contribution -0.816 -0.561 -1.194 1.551 sum -1.289 5.542 25.785 26.405 Atomic orbital electron populations 1.21742 0.96696 1.00420 1.00254 1.21221 0.94832 1.00134 0.94104 0.91622 1.19108 0.96132 0.95350 0.90358 1.21234 1.34643 1.08246 0.90981 0.92573 1.25019 0.95344 0.95082 0.99108 1.69960 1.39105 1.21223 1.23391 0.86632 0.78933 0.79819 0.82844 1.20711 1.21331 1.19919 1.22182 1.00332 0.94577 0.89263 1.60705 1.19702 1.50035 1.00872 1.20512 0.99367 0.90918 0.88693 0.89353 1.22480 0.99552 0.99502 1.02081 1.20039 0.93769 0.95674 0.94899 1.20962 0.99588 0.93852 0.96717 1.21104 0.96561 0.99264 0.94216 1.21725 1.00051 0.97841 0.98013 1.96689 1.97955 1.55233 1.47821 1.21026 0.98029 0.93665 0.98410 1.21030 0.97951 0.99147 0.95024 0.91840 0.94017 0.95051 0.96673 0.96762 0.93096 0.91397 0.95578 0.84140 0.92065 0.92293 0.91782 0.85106 0.85226 0.85263 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.77 37.16 0.33 -2.07 16 2 C -0.08 -1.66 2.54 -90.62 -0.23 -1.89 16 3 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.22 8.41 -34.44 -0.29 -14.51 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 13 C 0.06 1.06 4.94 -3.83 -0.02 1.04 16 14 N -0.68 -9.19 5.70 -107.96 -0.61 -9.81 16 15 C 0.12 1.30 2.79 -68.87 -0.19 1.11 16 16 H 0.09 1.01 7.66 -51.93 -0.40 0.61 16 17 C -0.18 -1.74 9.14 37.15 0.34 -1.40 16 18 C -0.04 -0.46 4.96 -104.62 -0.52 -0.98 16 19 C -0.09 -0.98 9.32 -39.59 -0.37 -1.35 16 20 C -0.09 -0.93 9.79 -39.56 -0.39 -1.32 16 21 C -0.10 -1.00 6.22 -39.51 -0.25 -1.24 16 22 Br -0.06 -0.58 33.70 -68.01 -2.29 -2.87 16 23 C -0.09 -0.89 9.79 -39.56 -0.39 -1.28 16 24 C -0.11 -1.11 9.67 -39.59 -0.38 -1.50 16 25 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 26 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.03 0.46 6.68 -51.93 -0.35 0.12 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 32 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 33 H 0.34 4.28 6.07 -39.29 -0.24 4.04 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 36 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 37 H 0.13 1.29 7.24 -52.49 -0.38 0.91 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.05 8.04 -52.49 -0.42 0.63 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -29.36 345.69 -10.78 -40.14 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.22 Total: 0.17 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -2.58 Total: -23.34 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.12 Total: -35.90 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.29 Total: -2.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.36 -10.78 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602503385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.775 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds