Wall clock time and date at job start Tue Mar 31 2020 14:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47527 * 2 1 4 4 C 1.53003 * 109.47423 * 240.00090 * 2 1 3 5 5 C 1.50703 * 109.47125 * 64.99909 * 4 2 1 6 6 H 1.07999 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00337 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99542 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00195 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47106 * 89.99846 * 9 7 5 11 11 H 1.48506 * 109.47065 * 209.99510 * 9 7 5 12 12 H 1.48493 * 109.47183 * 329.99721 * 9 7 5 13 13 C 1.52997 * 109.47079 * 120.00334 * 2 1 3 14 14 N 1.46900 * 109.47220 * 294.99805 * 13 2 1 15 15 C 1.46894 * 111.00559 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47515 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.38233 * 119.99171 * 269.72332 * 17 16 15 19 19 C 1.38221 * 120.01137 * 179.76441 * 18 17 16 20 20 C 1.38327 * 119.98849 * 0.51394 * 19 18 17 21 21 Br 1.89094 * 120.01053 * 179.71876 * 20 19 18 22 22 C 1.38323 * 119.97745 * 359.74139 * 20 19 18 23 23 C 1.38212 * 119.99322 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47033 * 59.99907 * 1 2 3 25 25 H 1.09007 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47507 * 300.00027 * 1 2 3 27 27 H 1.08998 * 109.47666 * 185.00015 * 4 2 1 28 28 H 1.09001 * 109.46990 * 305.00497 * 4 2 1 29 29 H 0.97011 * 120.00008 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46989 * 175.00023 * 13 2 1 31 31 H 1.09005 * 109.47424 * 54.99799 * 13 2 1 32 32 H 1.00905 * 110.99607 * 303.95664 * 14 13 2 33 33 H 1.09002 * 109.47104 * 59.99767 * 15 14 13 34 34 H 1.08998 * 109.46828 * 300.00600 * 15 14 13 35 35 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 36 36 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 37 37 H 1.08004 * 119.99601 * 0.02709 * 18 17 16 38 38 H 1.07999 * 120.00655 * 180.23086 * 19 18 17 39 39 H 1.08001 * 120.00599 * 179.97438 * 22 20 19 40 40 H 1.07999 * 120.00030 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4021 -3.7284 8 7 2.6756 -1.5192 -3.8512 9 14 1.4988 0.5630 -5.2496 10 1 2.5648 1.5418 -5.5823 11 1 1.3112 -0.3708 -6.3890 12 1 0.2282 1.2852 -4.9870 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.1257 -0.6266 3.6671 16 6 1.7023 0.1908 4.8892 17 6 2.1884 -0.4907 6.1423 18 6 1.3861 -1.4184 6.7800 19 6 1.8335 -2.0472 7.9267 20 6 3.0800 -1.7404 8.4421 21 35 3.6894 -2.5945 10.0152 22 6 3.8802 -0.8081 7.8065 23 6 3.4340 -0.1833 6.6573 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1263 -0.7995 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 2.9230 -1.8421 -4.7319 30 1 3.1262 -0.7995 1.2055 31 1 1.6053 -1.7199 1.2951 32 1 1.9881 0.9872 2.3966 33 1 3.2126 -0.7038 3.6400 34 1 1.6920 -1.6246 3.7299 35 1 0.6153 0.2676 4.9161 36 1 2.1356 1.1890 4.8265 37 1 0.4112 -1.6549 6.3799 38 1 1.2082 -2.7747 8.4228 39 1 4.8534 -0.5679 8.2087 40 1 4.0586 0.5448 6.1612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:35 Heat of formation + Delta-G solvation = -3.078240 kcal Electronic energy + Delta-G solvation = -18374.415179 eV Core-core repulsion = 15426.898257 eV Total energy + Delta-G solvation = -2947.516921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77324 -37.09717 -34.88821 -33.16580 -31.95563 -31.40437 -30.62946 -27.89215 -26.68752 -24.97208 -23.17733 -23.05896 -22.01577 -21.11354 -19.04527 -16.97315 -16.31376 -16.10926 -15.55972 -15.29960 -14.69394 -14.29186 -14.20598 -13.91099 -13.64301 -13.45965 -13.14067 -12.53407 -12.34632 -12.06670 -11.72260 -11.51707 -11.42757 -11.33857 -11.09468 -10.95356 -10.86422 -10.71076 -10.62845 -10.29089 -10.22825 -9.70506 -9.37369 -9.16247 -8.98487 -8.83346 -8.32802 -8.16555 -5.97500 -3.98650 0.73521 0.96421 1.29035 3.25245 3.32902 3.39294 3.42679 4.22814 4.39730 4.48303 4.55622 4.80439 4.88203 5.00818 5.10218 5.19272 5.31482 5.38276 5.53737 5.58319 5.68717 5.76347 5.85287 5.89365 5.92661 5.96807 6.15223 6.28147 6.40878 6.47806 6.54514 6.68051 7.00376 7.17611 7.19399 7.33479 7.61543 7.69845 7.85380 8.02679 8.46599 9.07742 9.64666 11.14001 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.043519 B = 0.001668 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.246939 B =16783.045585 C =17018.616218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.064 3.936 16 C -0.083 4.083 17 C -0.058 4.058 18 C -0.109 4.109 19 C -0.089 4.089 20 C -0.097 4.097 21 Br -0.058 7.058 22 C -0.089 4.089 23 C -0.112 4.112 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.012 0.988 28 H 0.016 0.984 29 H 0.259 0.741 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.337 0.663 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -0.198 30.548 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.319 5.319 15 C -0.065 4.065 16 C -0.120 4.120 17 C -0.059 4.059 18 C -0.128 4.128 19 C -0.109 4.109 20 C -0.177 4.177 21 Br 0.027 6.973 22 C -0.109 4.109 23 C -0.131 4.131 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.891 -0.932 31.036 31.062 hybrid contribution 0.723 0.728 -1.286 1.645 sum 1.614 -0.204 29.750 29.794 Atomic orbital electron populations 1.21588 0.95704 1.00572 1.00150 1.21202 0.96025 0.98899 0.94026 0.92836 1.19127 0.95901 0.95602 0.90457 1.21237 1.34599 1.08249 0.90977 0.92553 1.25033 0.95385 0.95109 0.99133 1.69972 1.39118 1.21211 1.23371 0.86617 0.78909 0.79787 0.82828 1.20783 1.21313 1.19881 1.22154 0.97191 0.97726 0.89371 1.60544 1.64028 1.05793 1.01535 1.21885 0.97321 0.98207 0.89111 1.20662 1.02430 0.98509 0.90440 1.20093 0.93938 0.95783 0.96127 1.21142 1.00376 0.96319 0.94995 1.21122 0.94203 0.99382 0.96165 1.21772 0.97939 1.01915 0.96039 1.96715 1.89134 1.79001 1.32418 1.21103 0.99376 0.95082 0.95345 1.21120 0.95931 1.00287 0.95729 0.92766 0.94180 0.93934 0.96953 0.96549 0.93107 0.95758 0.91552 0.84583 0.95445 0.91054 0.89666 0.90762 0.84846 0.85044 0.85096 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.15 0.33 -2.03 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 1.09 5.07 -3.83 -0.02 1.07 16 14 N -0.69 -9.42 5.96 -113.78 -0.68 -10.10 16 15 C 0.06 0.73 5.67 -3.83 -0.02 0.71 16 16 C -0.08 -0.75 5.61 -27.88 -0.16 -0.90 16 17 C -0.06 -0.52 5.13 -104.62 -0.54 -1.06 16 18 C -0.11 -0.93 9.70 -39.59 -0.38 -1.32 16 19 C -0.09 -0.76 9.79 -39.55 -0.39 -1.14 16 20 C -0.10 -0.87 6.22 -39.52 -0.25 -1.12 16 21 Br -0.06 -0.48 33.70 -68.01 -2.29 -2.77 16 22 C -0.09 -0.76 9.79 -39.56 -0.39 -1.15 16 23 C -0.11 -0.95 9.70 -39.59 -0.38 -1.33 16 24 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.34 4.30 8.73 -39.29 -0.34 3.95 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -29.78 352.50 -11.40 -41.18 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.53 Total: -1.24 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.93 Total: -22.77 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.06 Total: -36.38 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.78 -11.40 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.100 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds