Wall clock time and date at job start Tue Mar 31 2020 14:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47527 * 2 1 4 4 C 1.53003 * 109.47423 * 240.00090 * 2 1 3 5 5 C 1.50703 * 109.47125 * 64.99909 * 4 2 1 6 6 H 1.07999 * 119.99683 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00337 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99542 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00195 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47106 * 89.99846 * 9 7 5 11 11 H 1.48506 * 109.47065 * 209.99510 * 9 7 5 12 12 H 1.48493 * 109.47183 * 329.99721 * 9 7 5 13 13 C 1.52997 * 109.47079 * 120.00334 * 2 1 3 14 14 N 1.46900 * 109.47220 * 294.99805 * 13 2 1 15 15 C 1.46894 * 111.00559 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47515 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.38233 * 119.99171 * 269.72332 * 17 16 15 19 19 C 1.38221 * 120.01137 * 179.76441 * 18 17 16 20 20 C 1.38327 * 119.98849 * 0.51394 * 19 18 17 21 21 Br 1.89094 * 120.01053 * 179.71876 * 20 19 18 22 22 C 1.38323 * 119.97745 * 359.74139 * 20 19 18 23 23 C 1.38212 * 119.99322 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47033 * 59.99907 * 1 2 3 25 25 H 1.09007 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47507 * 300.00027 * 1 2 3 27 27 H 1.08998 * 109.47666 * 185.00015 * 4 2 1 28 28 H 1.09001 * 109.46990 * 305.00497 * 4 2 1 29 29 H 0.97011 * 120.00008 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46989 * 175.00023 * 13 2 1 31 31 H 1.09005 * 109.47424 * 54.99799 * 13 2 1 32 32 H 1.00905 * 110.99607 * 303.95664 * 14 13 2 33 33 H 1.09002 * 109.47104 * 59.99767 * 15 14 13 34 34 H 1.08998 * 109.46828 * 300.00600 * 15 14 13 35 35 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 36 36 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 37 37 H 1.08004 * 119.99601 * 0.02709 * 18 17 16 38 38 H 1.07999 * 120.00655 * 180.23086 * 19 18 17 39 39 H 1.08001 * 120.00599 * 179.97438 * 22 20 19 40 40 H 1.07999 * 120.00030 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4021 -3.7284 8 7 2.6756 -1.5192 -3.8512 9 14 1.4988 0.5630 -5.2496 10 1 2.5648 1.5418 -5.5823 11 1 1.3112 -0.3708 -6.3890 12 1 0.2282 1.2852 -4.9870 13 6 2.0399 -0.7213 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.1257 -0.6266 3.6671 16 6 1.7023 0.1908 4.8892 17 6 2.1884 -0.4907 6.1423 18 6 1.3861 -1.4184 6.7800 19 6 1.8335 -2.0472 7.9267 20 6 3.0800 -1.7404 8.4421 21 35 3.6894 -2.5945 10.0152 22 6 3.8802 -0.8081 7.8065 23 6 3.4340 -0.1833 6.6573 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1263 -0.7995 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 2.9230 -1.8421 -4.7319 30 1 3.1262 -0.7995 1.2055 31 1 1.6053 -1.7199 1.2951 32 1 1.9881 0.9872 2.3966 33 1 3.2126 -0.7038 3.6400 34 1 1.6920 -1.6246 3.7299 35 1 0.6153 0.2676 4.9161 36 1 2.1356 1.1890 4.8265 37 1 0.4112 -1.6549 6.3799 38 1 1.2082 -2.7747 8.4228 39 1 4.8534 -0.5679 8.2087 40 1 4.0586 0.5448 6.1612 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602548420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:35 Heat of formation + Delta-G solvation = -18.228846 kcal Electronic energy + Delta-G solvation = -18375.072158 eV Core-core repulsion = 15426.898257 eV Total energy + Delta-G solvation = -2948.173901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42016 -38.42608 -36.21228 -34.59070 -33.43795 -32.02367 -31.50398 -29.15949 -28.29353 -26.41686 -24.53315 -23.80175 -23.28406 -21.85723 -20.67511 -18.48463 -17.59858 -16.97770 -16.61107 -16.27531 -16.17683 -15.66139 -15.46290 -14.86040 -14.47095 -14.38382 -14.28379 -14.04565 -13.66931 -13.36357 -13.22483 -12.81151 -12.75702 -12.60236 -12.39020 -12.20452 -12.10381 -11.95491 -11.79478 -11.63980 -11.45723 -11.27119 -11.07569 -10.88830 -10.52733 -10.00133 -9.53641 -9.32062 -8.16794 -6.25879 0.07597 0.33733 0.64267 1.40952 1.41961 1.53077 2.42681 2.59660 3.16574 3.24581 3.78384 3.96155 4.01177 4.09326 4.18674 4.33438 4.36150 4.41201 4.48806 4.55966 4.63144 4.77776 4.90175 4.93042 4.93399 5.04139 5.08512 5.18258 5.22692 5.26017 5.30921 5.48545 5.53137 5.57595 5.61934 5.82746 5.85562 5.89994 6.06837 6.32063 6.53890 6.90443 7.42360 8.95226 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.043519 B = 0.001668 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.246939 B =16783.045585 C =17018.616218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.056 0.944 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.077 3.923 14 N -0.684 5.684 15 C 0.067 3.933 16 C -0.071 4.071 17 C -0.067 4.067 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.109 4.109 21 Br -0.056 7.056 22 C -0.097 4.097 23 C -0.116 4.116 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.069 0.931 27 H -0.015 1.015 28 H -0.011 1.011 29 H 0.261 0.739 30 H 0.016 0.984 31 H 0.059 0.941 32 H 0.345 0.655 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.553 1.122 31.299 31.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.007 4.007 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.052 4.052 14 N -0.315 5.315 15 C -0.062 4.062 16 C -0.109 4.109 17 C -0.068 4.068 18 C -0.133 4.133 19 C -0.116 4.116 20 C -0.188 4.188 21 Br 0.029 6.971 22 C -0.117 4.117 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.004 0.996 28 H 0.007 0.993 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.164 0.836 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.222 0.403 31.810 31.813 hybrid contribution 0.957 0.281 -1.457 1.766 sum 1.179 0.684 30.352 30.383 Atomic orbital electron populations 1.21490 0.94631 1.00331 1.00616 1.21016 0.96768 0.98489 0.93052 0.92563 1.19032 0.94061 0.94705 0.92892 1.21650 1.34335 1.08545 0.92027 0.91961 1.25983 0.95356 0.96136 1.02753 1.70110 1.40382 1.22960 1.24248 0.85486 0.79033 0.78333 0.78448 1.19905 1.21047 1.18667 1.21832 0.96460 0.97337 0.89566 1.60457 1.64053 1.06026 1.00983 1.21897 0.97172 0.98235 0.88913 1.20532 1.02617 0.98526 0.89184 1.20139 0.94295 0.96161 0.96243 1.21337 1.00915 0.96109 0.94977 1.21315 0.94313 0.99660 0.96311 1.21952 0.98324 1.02219 0.96311 1.96711 1.89122 1.78982 1.32303 1.21303 0.99914 0.94991 0.95443 1.21326 0.95993 1.00448 0.95725 0.94429 0.94775 0.91170 0.99647 0.99294 0.92990 0.96530 0.92248 0.83635 0.95574 0.91661 0.89384 0.89647 0.83711 0.83939 0.83973 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.24 8.89 71.98 0.64 -3.60 16 2 C -0.07 -2.98 2.48 -10.80 -0.03 -3.01 16 3 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.61 4.45 29.85 0.13 1.75 16 5 C -0.53 -29.77 8.41 25.60 0.22 -29.55 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -57.44 13.29 21.45 0.28 -57.15 16 9 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.08 2.58 5.07 86.30 0.44 3.02 16 14 N -0.68 -17.44 5.96 -513.90 -3.06 -20.50 16 15 C 0.07 1.40 5.67 86.30 0.49 1.89 16 16 C -0.07 -1.12 5.61 29.85 0.17 -0.95 16 17 C -0.07 -1.08 5.13 -19.86 -0.10 -1.18 16 18 C -0.11 -1.78 9.70 22.26 0.22 -1.56 16 19 C -0.10 -1.51 9.79 22.29 0.22 -1.30 16 20 C -0.11 -1.82 6.22 22.31 0.14 -1.68 16 21 Br -0.06 -0.88 33.70 -20.37 -0.69 -1.57 16 22 C -0.10 -1.51 9.79 22.28 0.22 -1.30 16 23 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 24 H 0.04 1.50 6.95 -2.39 -0.02 1.49 16 25 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 27 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 28 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 30 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.35 7.99 8.73 -89.69 -0.78 7.20 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.36 8.08 -2.39 -0.02 1.35 16 36 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 37 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -63.73 352.50 2.21 -61.52 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.22 Total: 10.07 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 3.42 Total: -38.85 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -2.78 Total: -77.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.69 Total: -1.57 kcal Total: -63.73 2.21 -61.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.290 kcal (2) G-P(sol) polarization free energy of solvation -63.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds