Wall clock time and date at job start Tue Mar 31 2020 14:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 119.98849 * 2 1 4 4 C 1.38200 * 120.00903 * 180.02562 * 3 2 1 5 5 C 1.38338 * 119.99319 * 359.97438 * 4 3 2 6 6 Br 1.89101 * 120.01372 * 179.97438 * 5 4 3 7 7 C 1.38314 * 119.97768 * 0.02562 * 5 4 3 8 8 C 1.50694 * 120.00277 * 179.97438 * 7 5 4 9 9 N 1.46910 * 109.47067 * 284.99325 * 8 7 5 10 10 C 1.46898 * 111.00101 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47092 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.46862 * 55.00713 * 11 10 9 13 13 C 1.52997 * 109.47482 * 295.00148 * 11 10 9 14 14 C 1.53006 * 109.47223 * 174.99860 * 11 10 9 15 15 C 1.50695 * 109.47196 * 185.00102 * 14 11 10 16 16 H 1.07999 * 120.00313 * 0.02562 * 15 14 11 17 17 C 1.37882 * 119.99880 * 179.97438 * 15 14 11 18 18 N 1.31508 * 120.00054 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47091 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46997 * 120.00139 * 19 17 15 22 22 H 1.48498 * 109.47334 * 240.00730 * 19 17 15 23 23 C 1.38219 * 119.99077 * 180.23141 * 2 1 3 24 24 H 1.09005 * 109.47184 * 90.00661 * 1 2 3 25 25 H 1.09004 * 109.47274 * 210.00228 * 1 2 3 26 26 H 1.09002 * 109.47198 * 330.00104 * 1 2 3 27 27 H 1.07999 * 119.99565 * 359.97438 * 3 2 1 28 28 H 1.08009 * 120.00238 * 179.97438 * 4 3 2 29 29 H 1.09004 * 109.47057 * 164.99917 * 8 7 5 30 30 H 1.08996 * 109.47788 * 44.99260 * 8 7 5 31 31 H 1.00896 * 110.99817 * 56.04942 * 9 8 7 32 32 H 1.09002 * 109.47308 * 60.00022 * 10 9 8 33 33 H 1.09006 * 109.47288 * 300.00665 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 35 35 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 36 36 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 37 37 H 1.09007 * 109.47135 * 305.00448 * 14 11 10 38 38 H 1.08996 * 109.46945 * 64.99955 * 14 11 10 39 39 H 0.97003 * 120.00316 * 180.02562 * 18 17 15 40 40 H 1.08000 * 119.99872 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5800 1.1980 -0.0005 5 6 4.2720 0.0001 -0.0005 6 35 6.1630 0.0001 -0.0020 7 6 3.5803 -1.1976 -0.0005 8 6 4.3335 -2.5028 -0.0011 9 7 4.8881 -2.7475 -1.3393 10 6 5.6303 -4.0146 -1.3779 11 6 6.1909 -4.2346 -2.7844 12 1 6.7892 -3.3714 -3.0760 13 6 5.0359 -4.4118 -3.7719 14 6 7.0671 -5.4889 -2.7938 15 6 7.7171 -5.6374 -4.1452 16 1 7.5251 -4.9098 -4.9198 17 6 8.5581 -6.7018 -4.3924 18 7 8.7924 -7.5876 -3.4491 19 14 9.3645 -6.8856 -6.0673 20 1 8.9416 -5.7654 -6.9459 21 1 10.8410 -6.8613 -5.9111 22 1 8.9522 -8.1756 -6.6764 23 6 2.1979 -1.1971 -0.0048 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6578 2.1327 -0.0004 28 1 4.1198 2.1336 -0.0010 29 1 3.6554 -3.3137 0.2650 30 1 5.1448 -2.4545 0.7251 31 1 5.4697 -1.9783 -1.6359 32 1 4.9609 -4.8358 -1.1215 33 1 6.4506 -3.9772 -0.6610 34 1 4.4117 -3.5182 -3.7652 35 1 4.4377 -5.2750 -3.4802 36 1 5.4354 -4.5681 -4.7740 37 1 7.8375 -5.3998 -2.0277 38 1 6.4506 -6.3642 -2.5889 39 1 9.3843 -8.3362 -3.6228 40 1 1.6577 -2.1323 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602688903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:53 Heat of formation + Delta-G solvation = 0.127901 kcal Electronic energy + Delta-G solvation = -19020.164108 eV Core-core repulsion = 16072.786215 eV Total energy + Delta-G solvation = -2947.377893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83330 -36.88601 -34.58368 -33.26278 -32.22202 -30.87612 -30.60868 -27.09030 -26.60850 -26.00632 -24.19332 -22.48563 -22.17365 -20.58240 -19.02706 -16.62892 -16.29498 -16.17401 -15.30852 -15.00962 -14.59141 -14.31993 -14.05321 -13.86108 -13.48082 -13.22795 -12.76387 -12.67182 -12.49871 -12.18461 -12.00374 -11.51822 -11.37715 -11.34330 -11.25738 -10.83905 -10.79939 -10.70878 -10.28994 -10.22844 -10.18100 -9.65785 -9.23342 -9.03071 -8.90321 -8.67597 -8.30097 -8.08298 -5.94728 -3.95429 0.86358 1.08181 1.50823 3.33588 3.34157 3.41639 3.46117 4.37880 4.50229 4.54350 4.56275 4.77966 4.95571 5.04219 5.18236 5.30325 5.35574 5.41211 5.45339 5.60778 5.70956 5.76088 5.80181 5.93215 5.95403 6.18013 6.20657 6.29979 6.44521 6.58675 6.61263 6.73382 7.04551 7.22376 7.23101 7.37204 7.66145 7.73951 7.89497 8.05956 8.50378 9.11205 9.67793 11.16894 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.003073 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.457493 B = 9108.821338 C = 9969.777467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.122 4.122 4 C -0.087 4.087 5 C -0.096 4.096 6 Br -0.048 7.048 7 C -0.040 4.040 8 C 0.086 3.914 9 N -0.681 5.681 10 C 0.064 3.936 11 C -0.082 4.082 12 H 0.053 0.947 13 C -0.122 4.122 14 C 0.028 3.972 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.100 4.100 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.340 0.660 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.012 0.988 38 H 0.016 0.984 39 H 0.258 0.742 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.473 19.308 11.098 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.175 4.175 6 Br 0.038 6.962 7 C -0.042 4.042 8 C -0.043 4.043 9 N -0.313 5.313 10 C -0.064 4.064 11 C -0.101 4.101 12 H 0.071 0.929 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.119 4.119 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.232 18.855 10.888 26.012 hybrid contribution 0.998 0.048 -0.391 1.073 sum -13.234 18.904 10.497 25.351 Atomic orbital electron populations 1.20828 0.90741 1.02962 1.02732 1.20051 0.96426 0.93033 0.97696 1.20996 0.93404 0.97894 1.01793 1.21051 0.94366 0.96574 0.98652 1.21767 0.90445 0.95913 1.09415 1.96751 1.02883 1.99047 1.97528 1.19800 0.93932 0.93766 0.96697 1.21008 0.97866 0.93281 0.92171 1.60675 1.41733 1.06015 1.22838 1.22172 0.95297 0.90273 0.98705 1.21198 0.96614 1.00546 0.91775 0.92866 1.21586 0.97249 0.99591 0.99548 1.19122 0.93718 0.91189 0.96963 1.21283 1.26461 1.08910 0.98233 0.92510 1.25021 0.96813 0.96040 0.96728 1.69976 1.37434 1.13623 1.32692 0.86582 0.79149 0.77949 0.84611 1.19737 1.21147 1.21099 1.20945 0.92628 0.98095 1.00241 0.90729 0.91225 0.91406 0.85381 0.85135 0.89842 0.93570 0.84069 0.91429 0.95575 0.93989 0.94144 0.92784 0.96921 0.96532 0.93194 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.07 -0.65 5.88 -104.62 -0.62 -1.26 16 3 C -0.12 -1.06 9.70 -39.59 -0.38 -1.45 16 4 C -0.09 -0.86 9.79 -39.56 -0.39 -1.25 16 5 C -0.10 -1.12 6.14 -39.52 -0.24 -1.36 16 6 Br -0.05 -0.58 30.66 -68.01 -2.08 -2.66 16 7 C -0.04 -0.48 5.43 -104.60 -0.57 -1.04 16 8 C 0.09 1.12 5.19 -4.97 -0.03 1.10 16 9 N -0.68 -10.52 5.94 -115.06 -0.68 -11.21 16 10 C 0.06 1.14 5.07 -3.83 -0.02 1.12 16 11 C -0.08 -1.73 2.48 -90.62 -0.22 -1.96 16 12 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 14 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 16 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C -0.10 -1.04 9.32 -39.59 -0.37 -1.41 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.08 1.02 7.95 -51.93 -0.41 0.60 16 30 H 0.05 0.61 7.40 -51.93 -0.38 0.23 16 31 H 0.34 5.34 7.00 -39.29 -0.28 5.06 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 1.21 8.00 -52.49 -0.42 0.79 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -30.51 346.68 -10.89 -41.40 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.41 Total: -0.43 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.66 Total: -22.73 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.05 Total: -37.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.08 Total: -2.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.51 -10.89 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.526 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds