Wall clock time and date at job start Tue Mar 31 2020 14:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38346 * 120.00547 * 2 1 4 4 Br 1.89105 * 120.00885 * 0.02562 * 3 2 1 5 5 C 1.38309 * 119.98146 * 180.26036 * 3 2 1 6 6 C 1.38239 * 119.98710 * 359.76141 * 5 3 2 7 7 C 1.38216 * 120.00887 * 0.02562 * 6 5 3 8 8 C 1.38192 * 120.00614 * 179.76853 * 2 1 3 9 9 C 1.50694 * 119.99799 * 359.97438 * 8 2 1 10 10 N 1.46910 * 109.47067 * 79.72222 * 9 8 2 11 11 C 1.46898 * 111.00101 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47092 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46862 * 55.00713 * 12 11 10 14 14 C 1.52997 * 109.47482 * 295.00148 * 12 11 10 15 15 C 1.53006 * 109.47223 * 174.99860 * 12 11 10 16 16 C 1.50695 * 109.47196 * 185.00102 * 15 12 11 17 17 H 1.07999 * 120.00313 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99880 * 179.97438 * 16 15 12 19 19 N 1.31508 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47091 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46997 * 120.00139 * 20 18 16 23 23 H 1.48498 * 109.47334 * 240.00730 * 20 18 16 24 24 H 1.09008 * 109.46816 * 270.23149 * 1 2 3 25 25 H 1.08998 * 109.47510 * 30.23160 * 1 2 3 26 26 H 1.08997 * 109.47376 * 150.23732 * 1 2 3 27 27 H 1.07995 * 120.00558 * 179.78392 * 5 3 2 28 28 H 1.07996 * 119.99351 * 179.97438 * 6 5 3 29 29 H 1.08002 * 119.98873 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.47057 * 319.72815 * 9 8 2 31 31 H 1.08996 * 109.47788 * 199.72157 * 9 8 2 32 32 H 1.00896 * 110.99817 * 56.04942 * 10 9 8 33 33 H 1.09002 * 109.47308 * 60.00022 * 11 10 9 34 34 H 1.09006 * 109.47288 * 300.00665 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99783 * 14 12 11 36 36 H 1.09001 * 109.46832 * 299.99974 * 14 12 11 37 37 H 1.09004 * 109.47261 * 179.97438 * 14 12 11 38 38 H 1.09007 * 109.47135 * 305.00448 * 15 12 11 39 39 H 1.08996 * 109.46945 * 64.99955 * 15 12 11 40 40 H 0.97003 * 120.00316 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1980 0.0000 4 35 1.2537 2.8360 0.0007 5 6 3.5819 1.1975 -0.0054 6 6 4.2723 -0.0002 -0.0059 7 6 3.5807 -1.1968 -0.0014 8 6 2.1981 -1.1967 0.0048 9 6 1.4447 -2.5018 0.0107 10 7 0.9853 -2.8081 -1.3507 11 6 0.2446 -4.0763 -1.3835 12 6 -0.2170 -4.3604 -2.8142 13 1 0.6428 -4.3420 -3.4838 14 6 -1.2235 -3.2924 -3.2470 15 6 -0.8791 -5.7386 -2.8723 16 6 -1.2231 -6.0707 -4.3014 17 1 -0.9923 -5.3693 -5.0895 18 6 -1.8317 -7.2706 -4.6029 19 7 -2.1123 -8.1250 -3.6434 20 14 -2.2575 -7.6827 -6.3745 21 1 -1.8405 -6.5635 -7.2570 22 1 -1.5471 -8.9224 -6.7788 23 1 -3.7230 -7.8898 -6.4960 24 1 -0.3633 0.0042 1.0277 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8921 -0.5101 27 1 4.1223 2.1325 -0.0090 28 1 5.3523 -0.0007 -0.0106 29 1 4.1204 -2.1323 -0.0022 30 1 0.5842 -2.4216 0.6750 31 1 2.1009 -3.2987 0.3606 32 1 1.7589 -2.8241 -1.9983 33 1 -0.6242 -4.0067 -0.7289 34 1 0.8922 -4.8843 -1.0429 35 1 -0.7518 -2.3106 -3.2056 36 1 -2.0834 -3.3110 -2.5773 37 1 -1.5520 -3.4946 -4.2665 38 1 -0.1921 -6.4885 -2.4802 39 1 -1.7889 -5.7302 -2.2721 40 1 -2.5401 -8.9694 -3.8556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602705206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:06 Heat of formation + Delta-G solvation = -13.259079 kcal Electronic energy + Delta-G solvation = -19106.878462 eV Core-core repulsion = 16158.920067 eV Total energy + Delta-G solvation = -2947.958396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67268 -38.25228 -35.87699 -34.25378 -33.98441 -32.57642 -30.54026 -28.90575 -27.97093 -27.16241 -25.68284 -23.89570 -22.59848 -21.78708 -20.70849 -18.48468 -17.43318 -17.08521 -16.59846 -16.12994 -15.99537 -15.69256 -15.29752 -14.82826 -14.43419 -14.25037 -14.09663 -13.80996 -13.44990 -13.21957 -13.18526 -13.06802 -13.00371 -12.76099 -12.56452 -12.20321 -12.09505 -11.95199 -11.84223 -11.73126 -11.46616 -11.07281 -11.04006 -10.89240 -10.52878 -9.70483 -9.54971 -9.28456 -8.16801 -6.25373 0.14941 0.31616 0.69740 1.40065 1.40948 1.53648 2.42566 2.58857 3.16895 3.39113 3.74771 3.89970 4.04088 4.14015 4.24228 4.27803 4.39087 4.50809 4.57245 4.65839 4.73519 4.81154 4.83061 4.92048 4.96515 4.99076 5.05130 5.28131 5.31004 5.36590 5.44123 5.48890 5.53568 5.58033 5.59663 5.83483 5.88552 5.91093 6.06942 6.33082 6.48648 6.91145 7.42902 8.95392 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.002422 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.306822 B =11557.291823 C =12130.019418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.043 4.043 3 C -0.111 4.111 4 Br -0.053 7.053 5 C -0.094 4.094 6 C -0.121 4.121 7 C -0.098 4.098 8 C -0.088 4.088 9 C 0.100 3.900 10 N -0.677 5.677 11 C 0.079 3.921 12 C -0.073 4.073 13 H 0.052 0.948 14 C -0.113 4.113 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.060 0.940 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.959 3.041 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.343 0.657 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.034 0.966 38 H -0.013 1.013 39 H -0.010 1.010 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.751 23.009 10.927 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.045 4.045 3 C -0.190 4.190 4 Br 0.032 6.968 5 C -0.113 4.113 6 C -0.140 4.140 7 C -0.117 4.117 8 C -0.089 4.089 9 C -0.028 4.028 10 N -0.308 5.308 11 C -0.050 4.050 12 C -0.092 4.092 13 H 0.071 0.929 14 C -0.170 4.170 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.784 3.216 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.206 1.206 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.163 0.837 28 H 0.174 0.826 29 H 0.160 0.840 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.005 0.995 39 H 0.009 0.991 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.738 23.854 11.015 28.777 hybrid contribution 0.420 -1.700 -0.636 1.863 sum 12.157 22.154 10.379 27.319 Atomic orbital electron populations 1.21049 0.90205 1.04350 1.02928 1.19768 0.97014 0.91172 0.96591 1.21895 0.95381 0.91139 1.10619 1.96653 1.76157 1.26259 1.97719 1.21352 0.91641 1.00162 0.98194 1.21400 1.01418 0.91117 1.00036 1.21480 0.93203 0.99638 0.97367 1.19727 0.93892 0.93873 1.01412 1.20844 0.98188 0.92618 0.91158 1.60464 1.29691 1.33593 1.07055 1.21852 0.97182 0.89005 0.96999 1.21002 0.97888 0.95390 0.94954 0.92906 1.21479 0.97883 0.97892 0.99733 1.19014 0.94045 0.92040 0.95414 1.21678 1.38143 1.02270 0.94415 0.92206 1.25931 0.95990 0.96511 1.01526 1.70100 1.43822 1.09687 1.34030 0.85483 0.77820 0.78281 0.79999 1.18626 1.20548 1.20605 0.90409 0.91043 0.89800 0.83660 0.82605 0.83993 0.90120 0.93576 0.83899 0.91745 0.96038 0.91578 0.94526 0.94645 0.99483 0.99135 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.80 71.23 0.63 -2.12 16 2 C -0.04 -0.93 5.88 -19.85 -0.12 -1.04 16 3 C -0.11 -2.23 6.22 22.31 0.14 -2.09 16 4 Br -0.05 -1.01 31.79 -20.37 -0.65 -1.65 16 5 C -0.09 -1.56 9.79 22.29 0.22 -1.34 16 6 C -0.12 -1.78 10.05 22.26 0.22 -1.56 16 7 C -0.10 -1.65 9.67 22.27 0.22 -1.44 16 8 C -0.09 -1.79 5.39 -19.87 -0.11 -1.90 16 9 C 0.10 2.18 4.94 85.55 0.42 2.60 16 10 N -0.68 -17.52 5.26 -517.92 -2.73 -20.24 16 11 C 0.08 2.54 5.07 86.30 0.44 2.98 16 12 C -0.07 -2.92 2.48 -10.79 -0.03 -2.95 16 13 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 14 C -0.11 -4.24 8.89 71.98 0.64 -3.60 16 15 C 0.03 1.69 4.45 29.85 0.13 1.82 16 16 C -0.53 -29.72 8.41 25.60 0.22 -29.50 16 17 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 20 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.07 1.51 6.66 -2.39 -0.02 1.50 16 26 H 0.08 2.00 6.33 -2.39 -0.02 1.99 16 27 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 28 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 29 H 0.14 1.89 8.04 -2.91 -0.02 1.87 16 30 H 0.08 1.78 7.30 -2.39 -0.02 1.76 16 31 H 0.05 0.93 8.00 -2.39 -0.02 0.91 16 32 H 0.34 8.59 8.72 -89.70 -0.78 7.81 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.07 2.17 7.75 -2.39 -0.02 2.15 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.03 1.44 6.95 -2.38 -0.02 1.42 16 38 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -63.09 344.93 2.66 -60.43 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.24 Total: 11.54 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 3.48 Total: -39.83 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -2.44 Total: -77.06 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.65 Total: -1.65 kcal Total: -63.09 2.66 -60.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.171 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds