Wall clock time and date at job start Tue Mar 31 2020 14:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38239 * 120.00573 * 2 1 4 4 C 1.38224 * 120.01100 * 180.25737 * 3 2 1 5 5 C 1.38263 * 120.01964 * 359.48336 * 4 3 2 6 6 C 1.50704 * 119.99762 * 180.25733 * 5 4 3 7 7 N 1.46898 * 109.46943 * 90.00462 * 6 5 4 8 8 C 1.46894 * 110.99908 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47407 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.46872 * 54.99946 * 9 8 7 11 11 C 1.53003 * 109.47238 * 294.99956 * 9 8 7 12 12 C 1.53001 * 109.47272 * 174.99817 * 9 8 7 13 13 C 1.50701 * 109.47109 * 185.00056 * 12 9 8 14 14 H 1.08001 * 119.99745 * 359.97438 * 13 12 9 15 15 C 1.37874 * 120.00050 * 179.97438 * 13 12 9 16 16 N 1.31516 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99880 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47031 * 60.00540 * 17 15 13 19 19 H 1.48500 * 109.47051 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47343 * 300.00259 * 17 15 13 21 21 C 1.38204 * 120.00696 * 0.23940 * 5 4 3 22 22 C 1.38303 * 120.00733 * 179.72162 * 2 1 3 23 23 Br 1.89099 * 120.00925 * 359.97438 * 22 2 1 24 24 H 1.08995 * 109.47074 * 270.27856 * 1 2 3 25 25 H 1.09004 * 109.46973 * 30.28012 * 1 2 3 26 26 H 1.09002 * 109.46840 * 150.27763 * 1 2 3 27 27 H 1.07997 * 119.99629 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99433 * 179.76937 * 4 3 2 29 29 H 1.09001 * 109.47047 * 210.00275 * 6 5 4 30 30 H 1.08997 * 109.46713 * 330.00242 * 6 5 4 31 31 H 1.00901 * 110.99749 * 303.94905 * 7 6 5 32 32 H 1.09004 * 109.46974 * 299.99777 * 8 7 6 33 33 H 1.08999 * 109.47119 * 59.99494 * 8 7 6 34 34 H 1.09006 * 109.46658 * 59.99512 * 11 9 8 35 35 H 1.08999 * 109.47061 * 179.97438 * 11 9 8 36 36 H 1.08997 * 109.47004 * 299.99992 * 11 9 8 37 37 H 1.09002 * 109.47183 * 304.99591 * 12 9 8 38 38 H 1.08995 * 109.46917 * 65.00272 * 12 9 8 39 39 H 0.96996 * 120.00030 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.00225 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2724 0.0002 0.0000 6 6 5.7794 0.0009 0.0000 7 7 6.2690 0.0073 1.3850 8 6 7.7374 0.0089 1.4242 9 6 8.2088 0.0162 2.8798 10 1 7.7607 -0.8236 3.4110 11 6 7.7848 1.3264 3.5466 12 6 9.7332 -0.1080 2.9229 13 6 10.1874 -0.2243 4.3551 14 1 9.4615 -0.2106 5.1546 15 6 11.5297 -0.3482 4.6447 16 7 12.4137 -0.3645 3.6711 17 14 12.0928 -0.4917 6.4200 18 1 11.4799 -1.6949 7.0379 19 1 13.5723 -0.6124 6.4618 20 1 11.6738 0.7186 7.1715 21 6 3.5820 -1.1971 0.0058 22 6 2.1986 -1.1976 0.0058 23 35 1.2536 -2.8355 0.0145 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6583 2.1324 -0.0004 28 1 4.1203 2.1327 -0.0091 29 1 6.1432 -0.8912 -0.5098 30 1 6.1422 0.8888 -0.5178 31 1 5.8932 0.7909 1.8977 32 1 8.1152 -0.8830 0.9241 33 1 8.1135 0.8970 0.9164 34 1 6.6988 1.4148 3.5158 35 1 8.1203 1.3314 4.5837 36 1 8.2329 2.1660 3.0154 37 1 10.0412 -0.9960 2.3708 38 1 10.1826 0.7756 2.4698 39 1 13.3581 -0.4513 3.8749 40 1 4.1225 -2.1321 0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602752222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:12 Heat of formation + Delta-G solvation = -0.371075 kcal Electronic energy + Delta-G solvation = -18728.430389 eV Core-core repulsion = 15781.030859 eV Total energy + Delta-G solvation = -2947.399530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82371 -37.03667 -34.69929 -32.93614 -32.31279 -31.60593 -29.58731 -28.27179 -26.79313 -25.43781 -23.82437 -22.82642 -22.11080 -20.84000 -18.99086 -16.69957 -16.20500 -16.15389 -15.37656 -14.98094 -14.78737 -14.39664 -14.05701 -13.75488 -13.71467 -13.30510 -12.71341 -12.59450 -12.54486 -12.20510 -12.03087 -11.75580 -11.46450 -11.27177 -11.24812 -11.03234 -10.87518 -10.73913 -10.35375 -10.30666 -10.21310 -9.72204 -9.18908 -9.02165 -8.96831 -8.76663 -8.32104 -8.17322 -5.96943 -3.98151 0.87604 1.05985 1.43384 3.33268 3.35180 3.39473 3.42159 4.38948 4.47131 4.50304 4.61434 4.76726 4.91835 5.02380 5.21074 5.29929 5.32970 5.38801 5.45774 5.59925 5.65178 5.75595 5.80588 5.83886 5.98762 6.04716 6.13887 6.24047 6.32874 6.45311 6.54861 6.59973 6.92011 7.10252 7.16671 7.31616 7.59933 7.70156 7.86117 8.03179 8.46976 9.07978 9.65221 11.14575 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023184 B = 0.002260 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.458402 B =12384.477874 C =12920.968576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.062 4.062 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.076 4.076 6 C 0.095 3.905 7 N -0.685 5.685 8 C 0.064 3.936 9 C -0.084 4.084 10 H 0.066 0.934 11 C -0.134 4.134 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.064 4.064 22 C -0.093 4.093 23 Br -0.054 7.054 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.339 0.661 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.176 0.477 -11.569 28.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.135 4.135 4 C -0.114 4.114 5 C -0.077 4.077 6 C -0.034 4.034 7 N -0.317 5.317 8 C -0.065 4.065 9 C -0.103 4.103 10 H 0.084 0.916 11 C -0.191 4.191 12 C -0.009 4.009 13 C -0.552 4.552 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.085 4.085 22 C -0.173 4.173 23 Br 0.032 6.968 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.158 0.842 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.371 -0.842 -11.533 28.795 hybrid contribution 0.916 1.210 0.710 1.676 sum -25.455 0.368 -10.823 27.663 Atomic orbital electron populations 1.20980 0.90490 1.03511 1.03088 1.19773 0.96478 0.91657 0.98514 1.20969 0.94070 0.97086 1.01409 1.21215 0.94192 0.97926 0.98105 1.19872 0.95904 0.92464 0.99471 1.20896 0.89319 1.01564 0.91594 1.60641 1.09642 1.50043 1.11326 1.22176 0.85077 0.99974 0.99231 1.21227 0.99589 0.97416 0.92081 0.91594 1.21743 0.97799 0.97512 1.02081 1.19105 0.87795 0.96976 0.97036 1.21202 0.91839 1.49549 0.92599 0.92615 1.25017 0.96988 0.95546 0.96975 1.69953 1.01528 1.50848 1.31381 0.86689 0.77423 0.78634 0.85440 1.20250 1.21376 1.20320 1.21011 0.91562 0.98984 0.96895 1.21699 0.94712 0.91061 1.09782 1.96666 1.75501 1.26961 1.97683 0.90500 0.91119 0.90609 0.85277 0.85549 0.90053 0.94327 0.84184 0.91316 0.95703 0.95006 0.91833 0.94028 0.96640 0.96757 0.93038 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.55 36.00 0.34 -0.56 16 2 C -0.06 -0.59 5.88 -104.60 -0.62 -1.21 16 3 C -0.12 -1.04 9.70 -39.59 -0.38 -1.43 16 4 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 5 C -0.08 -0.84 5.39 -104.62 -0.56 -1.41 16 6 C 0.10 1.14 5.81 -4.98 -0.03 1.11 16 7 N -0.68 -9.87 6.49 -115.06 -0.75 -10.62 16 8 C 0.06 1.08 5.14 -3.83 -0.02 1.06 16 9 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 10 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 11 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 12 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 13 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 14 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 17 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.06 -0.73 9.44 -39.56 -0.37 -1.11 16 22 C -0.09 -1.00 6.22 -39.52 -0.25 -1.25 16 23 Br -0.05 -0.53 31.79 -68.01 -2.16 -2.69 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.08 0.55 6.65 -51.93 -0.35 0.21 16 27 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 30 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.34 4.70 6.97 -39.29 -0.27 4.43 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.03 0.49 6.68 -51.93 -0.35 0.15 16 35 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -29.79 346.94 -10.97 -40.76 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.32 Total: -0.35 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -2.69 Total: -22.79 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.01 Total: -36.90 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.16 Total: -2.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.79 -10.97 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.392 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds