Wall clock time and date at job start Tue Mar 31 2020 14:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38239 * 120.00573 * 2 1 4 4 C 1.38224 * 120.01100 * 180.25737 * 3 2 1 5 5 C 1.38263 * 120.01964 * 359.48336 * 4 3 2 6 6 C 1.50704 * 119.99762 * 180.25733 * 5 4 3 7 7 N 1.46898 * 109.46943 * 90.00462 * 6 5 4 8 8 C 1.46894 * 110.99908 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47407 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.46872 * 54.99946 * 9 8 7 11 11 C 1.53003 * 109.47238 * 294.99956 * 9 8 7 12 12 C 1.53001 * 109.47272 * 174.99817 * 9 8 7 13 13 C 1.50701 * 109.47109 * 185.00056 * 12 9 8 14 14 H 1.08001 * 119.99745 * 359.97438 * 13 12 9 15 15 C 1.37874 * 120.00050 * 179.97438 * 13 12 9 16 16 N 1.31516 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99880 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47031 * 60.00540 * 17 15 13 19 19 H 1.48500 * 109.47051 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47343 * 300.00259 * 17 15 13 21 21 C 1.38204 * 120.00696 * 0.23940 * 5 4 3 22 22 C 1.38303 * 120.00733 * 179.72162 * 2 1 3 23 23 Br 1.89099 * 120.00925 * 359.97438 * 22 2 1 24 24 H 1.08995 * 109.47074 * 270.27856 * 1 2 3 25 25 H 1.09004 * 109.46973 * 30.28012 * 1 2 3 26 26 H 1.09002 * 109.46840 * 150.27763 * 1 2 3 27 27 H 1.07997 * 119.99629 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99433 * 179.76937 * 4 3 2 29 29 H 1.09001 * 109.47047 * 210.00275 * 6 5 4 30 30 H 1.08997 * 109.46713 * 330.00242 * 6 5 4 31 31 H 1.00901 * 110.99749 * 303.94905 * 7 6 5 32 32 H 1.09004 * 109.46974 * 299.99777 * 8 7 6 33 33 H 1.08999 * 109.47119 * 59.99494 * 8 7 6 34 34 H 1.09006 * 109.46658 * 59.99512 * 11 9 8 35 35 H 1.08999 * 109.47061 * 179.97438 * 11 9 8 36 36 H 1.08997 * 109.47004 * 299.99992 * 11 9 8 37 37 H 1.09002 * 109.47183 * 304.99591 * 12 9 8 38 38 H 1.08995 * 109.46917 * 65.00272 * 12 9 8 39 39 H 0.96996 * 120.00030 * 179.97438 * 16 15 13 40 40 H 1.07998 * 120.00225 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2724 0.0002 0.0000 6 6 5.7794 0.0009 0.0000 7 7 6.2690 0.0073 1.3850 8 6 7.7374 0.0089 1.4242 9 6 8.2088 0.0162 2.8798 10 1 7.7607 -0.8236 3.4110 11 6 7.7848 1.3264 3.5466 12 6 9.7332 -0.1080 2.9229 13 6 10.1874 -0.2243 4.3551 14 1 9.4615 -0.2106 5.1546 15 6 11.5297 -0.3482 4.6447 16 7 12.4137 -0.3645 3.6711 17 14 12.0928 -0.4917 6.4200 18 1 11.4799 -1.6949 7.0379 19 1 13.5723 -0.6124 6.4618 20 1 11.6738 0.7186 7.1715 21 6 3.5820 -1.1971 0.0058 22 6 2.1986 -1.1976 0.0058 23 35 1.2536 -2.8355 0.0145 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6583 2.1324 -0.0004 28 1 4.1203 2.1327 -0.0091 29 1 6.1432 -0.8912 -0.5098 30 1 6.1422 0.8888 -0.5178 31 1 5.8932 0.7909 1.8977 32 1 8.1152 -0.8830 0.9241 33 1 8.1135 0.8970 0.9164 34 1 6.6988 1.4148 3.5158 35 1 8.1203 1.3314 4.5837 36 1 8.2329 2.1660 3.0154 37 1 10.0412 -0.9960 2.3708 38 1 10.1826 0.7756 2.4698 39 1 13.3581 -0.4513 3.8749 40 1 4.1225 -2.1321 0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602752222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:11 Heat of formation + Delta-G solvation = -16.031788 kcal Electronic energy + Delta-G solvation = -18729.109488 eV Core-core repulsion = 15781.030859 eV Total energy + Delta-G solvation = -2948.078629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59111 -38.40878 -36.04479 -34.49771 -33.22277 -32.91419 -30.33521 -29.46333 -28.47343 -26.78078 -25.11498 -23.72162 -23.56044 -21.65116 -20.63855 -18.54610 -17.43191 -16.95328 -16.60538 -16.32445 -15.89934 -15.76024 -15.13339 -14.85626 -14.66601 -14.41467 -14.17936 -13.93658 -13.46106 -13.36188 -13.21507 -13.03197 -12.89563 -12.74122 -12.55825 -12.26172 -12.17392 -11.99879 -11.92066 -11.78646 -11.48620 -11.09014 -11.05938 -10.92845 -10.52272 -9.77142 -9.59088 -9.29570 -8.16877 -6.25905 0.11700 0.29599 0.66708 1.40479 1.43138 1.50774 2.42389 2.55654 3.16520 3.39342 3.71287 3.83621 3.99718 4.13982 4.21256 4.26102 4.30919 4.43928 4.49744 4.64145 4.71031 4.78018 4.78800 4.81053 4.88111 4.95093 5.04454 5.19247 5.24760 5.26685 5.38844 5.44202 5.49439 5.54002 5.55963 5.80382 5.86956 5.90299 6.05855 6.31944 6.48294 6.89979 7.42273 8.94982 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023184 B = 0.002260 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.458402 B =12384.477874 C =12920.968576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.066 4.066 3 C -0.115 4.115 4 C -0.096 4.096 5 C -0.088 4.088 6 C 0.099 3.901 7 N -0.687 5.687 8 C 0.077 3.923 9 C -0.076 4.076 10 H 0.054 0.946 11 C -0.126 4.126 12 C 0.033 3.967 13 C -0.530 4.530 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.960 3.040 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.267 1.267 21 C -0.079 4.079 22 C -0.108 4.108 23 Br -0.053 7.053 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.157 0.843 28 H 0.144 0.856 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.345 0.655 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.043 0.957 37 H -0.014 1.014 38 H -0.008 1.008 39 H 0.262 0.738 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.062 1.691 -11.034 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.068 4.068 3 C -0.134 4.134 4 C -0.115 4.115 5 C -0.089 4.089 6 C -0.030 4.030 7 N -0.319 5.319 8 C -0.052 4.052 9 C -0.095 4.095 10 H 0.072 0.928 11 C -0.183 4.183 12 C -0.004 4.004 13 C -0.568 4.568 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.100 4.100 22 C -0.188 4.188 23 Br 0.033 6.967 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.175 0.825 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.165 0.835 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.005 0.995 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.282 0.372 -11.000 30.348 hybrid contribution 1.445 0.824 0.487 1.733 sum -26.838 1.196 -10.512 28.848 Atomic orbital electron populations 1.21031 0.88907 1.04370 1.03688 1.20131 0.97763 0.91429 0.97471 1.21310 0.93903 0.97966 1.00186 1.21454 0.94773 0.97976 0.97268 1.19801 0.95200 0.93059 1.00862 1.20873 0.90132 1.01947 0.90016 1.60535 1.07603 1.50497 1.13272 1.21855 0.86980 0.99720 0.96610 1.21019 0.95734 0.98153 0.94586 0.92783 1.21644 0.99963 0.96228 1.00497 1.18998 0.91542 0.94452 0.95449 1.21621 0.92281 1.49100 0.93811 0.92171 1.25941 0.97213 0.95163 1.01610 1.70090 1.01867 1.51900 1.33763 0.85578 0.76942 0.79125 0.79889 1.19393 1.21011 1.19139 1.21043 0.92114 0.98969 0.97852 1.21852 0.94646 0.91798 1.10476 1.96653 1.75282 1.27045 1.97711 0.89914 0.89173 0.90890 0.82518 0.83814 0.90483 0.93098 0.83539 0.92337 0.95330 0.91614 0.93713 0.93833 0.99536 0.99009 0.92936 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.55 71.23 0.68 -0.82 16 2 C -0.07 -1.12 5.88 -19.85 -0.12 -1.24 16 3 C -0.12 -1.72 9.70 22.27 0.22 -1.51 16 4 C -0.10 -1.63 9.70 22.27 0.22 -1.41 16 5 C -0.09 -1.84 5.39 -19.87 -0.11 -1.95 16 6 C 0.10 2.25 5.81 85.56 0.50 2.74 16 7 N -0.69 -18.96 6.49 -517.94 -3.36 -22.32 16 8 C 0.08 2.60 5.14 86.30 0.44 3.05 16 9 C -0.08 -3.10 2.55 -10.79 -0.03 -3.12 16 10 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 11 C -0.13 -4.52 8.77 71.98 0.63 -3.89 16 12 C 0.03 1.75 4.45 29.85 0.13 1.88 16 13 C -0.53 -30.13 8.41 25.60 0.22 -29.92 16 14 H 0.06 3.29 7.05 -2.91 -0.02 3.27 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 16 N -0.94 -57.44 13.29 21.45 0.28 -57.15 16 17 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 C -0.08 -1.77 9.44 22.29 0.21 -1.56 16 22 C -0.11 -2.22 6.22 22.31 0.14 -2.09 16 23 Br -0.05 -1.00 31.79 -20.37 -0.65 -1.65 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 0.74 8.09 -2.38 -0.02 0.72 16 26 H 0.07 0.94 6.65 -2.39 -0.02 0.92 16 27 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 28 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 30 H 0.05 1.04 8.09 -2.39 -0.02 1.02 16 31 H 0.35 8.79 6.97 -89.69 -0.63 8.17 16 32 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.90 6.68 -2.38 -0.02 1.89 16 35 H 0.04 1.76 6.95 -2.39 -0.02 1.74 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -64.56 346.94 2.29 -62.27 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.39 Total: 11.60 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 3.59 Total: -39.48 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -3.08 Total: -79.47 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -0.65 Total: -1.65 kcal Total: -64.56 2.29 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.241 kcal (2) G-P(sol) polarization free energy of solvation -64.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds