Wall clock time and date at job start Tue Mar 31 2020 14:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 120.00841 * 2 1 4 4 C 1.38215 * 120.01104 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02284 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99639 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46738 * 90.00360 * 6 5 4 8 8 C 1.46897 * 110.99727 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46940 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47448 * 304.99654 * 9 8 7 11 11 C 1.53001 * 109.47080 * 65.00472 * 9 8 7 12 12 C 1.53002 * 109.46893 * 184.99774 * 9 8 7 13 13 C 1.50706 * 109.47153 * 174.99718 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 C 1.38197 * 120.00801 * 0.23632 * 5 4 3 22 22 C 1.38306 * 120.00265 * 179.97438 * 2 1 3 23 23 Br 1.89098 * 120.00911 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47022 * 89.99850 * 1 2 3 25 25 H 1.08998 * 109.46999 * 209.99782 * 1 2 3 26 26 H 1.09003 * 109.46753 * 330.00283 * 1 2 3 27 27 H 1.08007 * 119.99119 * 359.95438 * 3 2 1 28 28 H 1.08002 * 119.98923 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47182 * 330.00105 * 6 5 4 30 30 H 1.09003 * 109.47063 * 210.00146 * 6 5 4 31 31 H 1.00902 * 111.00039 * 56.04720 * 7 6 5 32 32 H 1.08997 * 109.47423 * 60.00043 * 8 7 6 33 33 H 1.09001 * 109.47481 * 299.99662 * 8 7 6 34 34 H 1.09001 * 109.46866 * 299.99538 * 11 9 8 35 35 H 1.09000 * 109.47309 * 59.99633 * 11 9 8 36 36 H 1.09000 * 109.46932 * 180.02562 * 11 9 8 37 37 H 1.09004 * 109.47178 * 55.00508 * 12 9 8 38 38 H 1.08993 * 109.47411 * 295.00191 * 12 9 8 39 39 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 40 40 H 1.08004 * 120.00560 * 179.72110 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2724 0.0001 0.0005 6 6 5.7794 0.0009 0.0005 7 7 6.2690 0.0010 1.3856 8 6 7.7374 0.0011 1.4248 9 6 8.2087 0.0020 2.8804 10 1 7.7598 0.8440 3.4072 11 6 7.7860 -1.3051 3.5541 12 6 9.7329 0.1278 2.9229 13 6 10.1870 0.2522 4.3545 14 1 9.4611 0.2420 5.1540 15 6 11.5291 0.3789 4.6436 16 7 12.4136 0.3858 3.6702 17 14 12.0921 0.5323 6.4181 18 1 12.1343 1.9663 6.8017 19 1 11.1423 -0.1890 7.3028 20 1 13.4471 -0.0582 6.5605 21 6 3.5821 -1.1971 -0.0049 22 6 2.1986 -1.1977 0.0005 23 35 1.2535 -2.8356 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6584 2.1324 -0.0007 28 1 4.1203 2.1326 0.0010 29 1 6.1423 0.8910 -0.5133 30 1 6.1432 -0.8890 -0.5133 31 1 5.8938 -0.7806 1.9018 32 1 8.1143 0.8911 0.9208 33 1 8.1145 -0.8889 0.9210 34 1 6.7001 -1.3948 3.5238 35 1 8.2349 -2.1472 3.0273 36 1 8.1213 -1.3043 4.5912 37 1 10.0401 1.0131 2.3662 38 1 10.1832 -0.7577 2.4745 39 1 12.1214 0.3059 2.7488 40 1 4.1226 -2.1322 -0.0095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602752224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:14 Heat of formation + Delta-G solvation = -4.393674 kcal Electronic energy + Delta-G solvation = -18769.594976 eV Core-core repulsion = 15822.021013 eV Total energy + Delta-G solvation = -2947.573963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.86225 -37.13927 -34.83948 -33.11433 -32.36718 -31.61078 -29.62730 -28.25083 -26.51586 -25.44042 -23.76393 -22.85367 -22.20145 -20.90800 -19.24934 -16.80869 -16.52100 -16.16790 -15.46696 -15.11045 -14.70824 -14.20768 -13.92477 -13.75364 -13.70484 -13.46064 -13.03371 -12.70429 -12.54432 -12.29903 -12.01191 -11.67080 -11.60695 -11.30622 -11.24586 -11.08358 -11.01870 -10.67925 -10.39189 -10.22887 -10.08163 -9.85882 -9.47461 -9.08355 -8.80700 -8.47092 -8.29156 -8.24423 -6.31702 -3.99790 0.86311 0.99830 1.37326 3.30108 3.45712 3.49187 3.64771 4.33829 4.47248 4.53130 4.59695 4.71688 4.85160 5.05078 5.17277 5.26727 5.30388 5.40245 5.44605 5.51905 5.61216 5.66215 5.72200 5.79308 5.91669 5.95435 6.12316 6.14170 6.31345 6.36351 6.45182 6.56513 6.79535 7.00988 7.03213 7.20980 7.42605 7.50339 7.61875 8.27646 8.51670 8.93600 9.71682 11.08842 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.025650 B = 0.002238 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.375806 B =12508.679571 C =12944.417564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 C -0.117 4.117 4 C -0.077 4.077 5 C -0.076 4.076 6 C 0.095 3.905 7 N -0.684 5.684 8 C 0.063 3.937 9 C -0.077 4.077 10 H 0.067 0.933 11 C -0.134 4.134 12 C 0.015 3.985 13 C -0.593 4.593 14 H 0.050 0.950 15 C 0.012 3.988 16 N -0.917 5.917 17 Si 1.070 2.930 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.285 1.285 21 C -0.082 4.082 22 C -0.093 4.093 23 Br -0.054 7.054 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.340 0.660 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.268 0.732 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.767 -3.525 -11.417 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.063 4.063 3 C -0.136 4.136 4 C -0.096 4.096 5 C -0.078 4.078 6 C -0.034 4.034 7 N -0.316 5.316 8 C -0.066 4.066 9 C -0.096 4.096 10 H 0.085 0.915 11 C -0.191 4.191 12 C -0.023 4.023 13 C -0.632 4.632 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.553 5.553 17 Si 0.898 3.102 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.211 1.211 21 C -0.103 4.103 22 C -0.172 4.172 23 Br 0.031 6.969 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.078 0.922 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.819 -3.314 -10.389 28.028 hybrid contribution -0.894 -0.728 -1.264 1.711 sum -26.714 -4.042 -11.653 29.424 Atomic orbital electron populations 1.20985 0.90449 1.03682 1.02974 1.19787 0.96509 0.91645 0.98395 1.21040 0.94205 0.97108 1.01202 1.21206 0.93850 0.98181 0.96373 1.19853 0.95821 0.92503 0.99575 1.20898 0.89412 1.01536 0.91506 1.60634 1.09451 1.50251 1.11255 1.22183 0.85359 0.99869 0.99144 1.21083 0.98689 0.97701 0.92114 0.91460 1.21734 0.97940 0.97266 1.02166 1.19243 0.89567 0.95698 0.97777 1.22059 0.94576 1.54353 0.92197 0.93159 1.25824 0.93313 0.94078 1.05885 1.70752 1.36639 1.47014 1.00939 0.83532 0.75717 0.76647 0.74258 1.21513 1.21516 1.21097 1.21008 0.91942 0.98672 0.98651 1.21642 0.94543 0.91079 1.09945 1.96667 1.75586 1.26925 1.97706 0.90590 0.90579 0.90985 0.85151 0.85057 0.89947 0.94431 0.84091 0.91408 0.95743 0.94819 0.94095 0.91682 0.97596 0.97668 0.92164 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.55 36.01 0.34 -0.55 16 2 C -0.06 -0.58 5.88 -104.60 -0.62 -1.20 16 3 C -0.12 -1.07 9.70 -39.59 -0.38 -1.45 16 4 C -0.08 -0.79 9.70 -39.58 -0.38 -1.17 16 5 C -0.08 -0.85 5.39 -104.63 -0.56 -1.41 16 6 C 0.10 1.14 5.81 -4.98 -0.03 1.11 16 7 N -0.68 -9.87 6.49 -115.06 -0.75 -10.62 16 8 C 0.06 1.07 5.14 -3.82 -0.02 1.05 16 9 C -0.08 -1.58 2.55 -90.62 -0.23 -1.81 16 10 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 11 C -0.13 -2.53 8.77 37.16 0.33 -2.21 16 12 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 13 C -0.59 -16.85 8.41 -34.44 -0.29 -17.14 16 14 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 15 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 16 N -0.92 -28.34 13.65 55.43 0.76 -27.58 16 17 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.08 -0.89 9.44 -39.56 -0.37 -1.27 16 22 C -0.09 -0.97 6.22 -39.52 -0.25 -1.22 16 23 Br -0.05 -0.51 31.79 -68.01 -2.16 -2.68 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.56 6.64 -51.93 -0.35 0.22 16 26 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 28 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 30 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.34 4.82 6.98 -39.29 -0.27 4.54 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 37 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 38 H 0.01 0.14 8.00 -51.93 -0.42 -0.28 16 39 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 40 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -30.51 345.62 -10.96 -41.47 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.26 Total: 0.41 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -2.67 Total: -26.74 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.01 Total: -38.20 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.16 Total: -2.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.51 -10.96 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.074 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds