Wall clock time and date at job start Tue Mar 31 2020 14:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 120.00841 * 2 1 4 4 C 1.38215 * 120.01104 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02284 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99639 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46738 * 90.00360 * 6 5 4 8 8 C 1.46897 * 110.99727 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.46940 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47448 * 304.99654 * 9 8 7 11 11 C 1.53001 * 109.47080 * 65.00472 * 9 8 7 12 12 C 1.53002 * 109.46893 * 184.99774 * 9 8 7 13 13 C 1.50706 * 109.47153 * 174.99718 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46758 * 269.72576 * 17 15 13 19 19 H 1.48499 * 109.47026 * 29.72423 * 17 15 13 20 20 H 1.48496 * 109.47474 * 149.72459 * 17 15 13 21 21 C 1.38197 * 120.00801 * 0.23632 * 5 4 3 22 22 C 1.38306 * 120.00265 * 179.97438 * 2 1 3 23 23 Br 1.89098 * 120.00911 * 0.02562 * 22 2 1 24 24 H 1.08999 * 109.47022 * 89.99850 * 1 2 3 25 25 H 1.08998 * 109.46999 * 209.99782 * 1 2 3 26 26 H 1.09003 * 109.46753 * 330.00283 * 1 2 3 27 27 H 1.08007 * 119.99119 * 359.95438 * 3 2 1 28 28 H 1.08002 * 119.98923 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47182 * 330.00105 * 6 5 4 30 30 H 1.09003 * 109.47063 * 210.00146 * 6 5 4 31 31 H 1.00902 * 111.00039 * 56.04720 * 7 6 5 32 32 H 1.08997 * 109.47423 * 60.00043 * 8 7 6 33 33 H 1.09001 * 109.47481 * 299.99662 * 8 7 6 34 34 H 1.09001 * 109.46866 * 299.99538 * 11 9 8 35 35 H 1.09000 * 109.47309 * 59.99633 * 11 9 8 36 36 H 1.09000 * 109.46932 * 180.02562 * 11 9 8 37 37 H 1.09004 * 109.47178 * 55.00508 * 12 9 8 38 38 H 1.08993 * 109.47411 * 295.00191 * 12 9 8 39 39 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 40 40 H 1.08004 * 120.00560 * 179.72110 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2724 0.0001 0.0005 6 6 5.7794 0.0009 0.0005 7 7 6.2690 0.0010 1.3856 8 6 7.7374 0.0011 1.4248 9 6 8.2087 0.0020 2.8804 10 1 7.7598 0.8440 3.4072 11 6 7.7860 -1.3051 3.5541 12 6 9.7329 0.1278 2.9229 13 6 10.1870 0.2522 4.3545 14 1 9.4611 0.2420 5.1540 15 6 11.5291 0.3789 4.6436 16 7 12.4136 0.3858 3.6702 17 14 12.0921 0.5323 6.4181 18 1 12.1343 1.9663 6.8017 19 1 11.1423 -0.1890 7.3028 20 1 13.4471 -0.0582 6.5605 21 6 3.5821 -1.1971 -0.0049 22 6 2.1986 -1.1977 0.0005 23 35 1.2535 -2.8356 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6584 2.1324 -0.0007 28 1 4.1203 2.1326 0.0010 29 1 6.1423 0.8910 -0.5133 30 1 6.1432 -0.8890 -0.5133 31 1 5.8938 -0.7806 1.9018 32 1 8.1143 0.8911 0.9208 33 1 8.1145 -0.8889 0.9210 34 1 6.7001 -1.3948 3.5238 35 1 8.2349 -2.1472 3.0273 36 1 8.1213 -1.3043 4.5912 37 1 10.0401 1.0131 2.3662 38 1 10.1832 -0.7577 2.4745 39 1 12.1214 0.3059 2.7488 40 1 4.1226 -2.1322 -0.0095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602752224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:14 Heat of formation + Delta-G solvation = -20.599036 kcal Electronic energy + Delta-G solvation = -18770.297693 eV Core-core repulsion = 15822.021013 eV Total energy + Delta-G solvation = -2948.276680 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62922 -38.54377 -36.25202 -34.63317 -33.26002 -32.90406 -30.36413 -29.31570 -28.32804 -26.78400 -25.12454 -23.90229 -23.54565 -21.72413 -20.89834 -18.88635 -17.56876 -16.95628 -16.45478 -16.04780 -15.98478 -15.60650 -15.40453 -15.08445 -14.88843 -14.46824 -14.26584 -13.85458 -13.56789 -13.39039 -13.21355 -13.09538 -12.98291 -12.79193 -12.50929 -12.27506 -12.04122 -11.94351 -11.87482 -11.76537 -11.61047 -11.32192 -11.09061 -10.57847 -10.51792 -9.84362 -9.60009 -9.37857 -8.65148 -6.34087 0.10063 0.24204 0.62539 1.52451 1.61633 1.79009 2.51526 2.58117 3.18965 3.31503 3.68926 3.76514 3.93328 4.07338 4.11598 4.19080 4.27050 4.32547 4.42117 4.60523 4.65818 4.67909 4.73170 4.75695 4.77031 4.90923 4.92718 5.01902 5.13735 5.23089 5.23196 5.30074 5.42046 5.47349 5.53320 5.62553 5.83181 5.95437 6.09154 6.22978 6.37086 6.63026 7.46598 8.75750 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.025650 B = 0.002238 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.375806 B =12508.679571 C =12944.417564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.117 4.117 4 C -0.085 4.085 5 C -0.088 4.088 6 C 0.099 3.901 7 N -0.684 5.684 8 C 0.077 3.923 9 C -0.069 4.069 10 H 0.055 0.945 11 C -0.126 4.126 12 C 0.017 3.983 13 C -0.604 4.604 14 H 0.051 0.949 15 C -0.043 4.043 16 N -0.943 5.943 17 Si 1.117 2.883 18 H -0.273 1.273 19 H -0.269 1.269 20 H -0.284 1.284 21 C -0.091 4.091 22 C -0.107 4.107 23 Br -0.050 7.050 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.155 0.845 28 H 0.139 0.861 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.343 0.657 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.043 0.957 37 H -0.015 1.015 38 H -0.013 1.013 39 H 0.255 0.745 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.747 -3.311 -10.994 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.103 4.103 5 C -0.090 4.090 6 C -0.030 4.030 7 N -0.316 5.316 8 C -0.052 4.052 9 C -0.088 4.088 10 H 0.074 0.926 11 C -0.184 4.184 12 C -0.021 4.021 13 C -0.642 4.642 14 H 0.070 0.930 15 C -0.240 4.240 16 N -0.581 5.581 17 Si 0.939 3.061 18 H -0.199 1.199 19 H -0.194 1.194 20 H -0.210 1.210 21 C -0.111 4.111 22 C -0.186 4.186 23 Br 0.036 6.964 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.173 0.827 28 H 0.157 0.843 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.162 0.838 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.003 0.997 38 H 0.005 0.995 39 H 0.064 0.936 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -27.832 -3.103 -9.984 29.731 hybrid contribution -0.362 -0.794 -1.455 1.696 sum -28.195 -3.897 -11.438 30.675 Atomic orbital electron populations 1.21037 0.88858 1.04318 1.03805 1.20133 0.97791 0.91420 0.97341 1.21332 0.93906 0.98062 1.00239 1.21400 0.94568 0.98175 0.96206 1.19776 0.95132 0.93079 1.00964 1.20892 0.90210 1.01976 0.89880 1.60559 1.07419 1.50477 1.13157 1.21869 0.87235 0.99765 0.96374 1.20902 0.94995 0.98201 0.94740 0.92602 1.21641 1.00034 0.96210 1.00470 1.19181 0.93192 0.93744 0.95981 1.22460 0.94815 1.53393 0.93571 0.93038 1.27384 0.94009 0.93220 1.09345 1.70889 1.37185 1.49258 1.00748 0.82929 0.75705 0.77694 0.69771 1.19889 1.19372 1.20967 1.21079 0.92351 0.98720 0.98957 1.21815 0.94610 0.91812 1.10404 1.96661 1.75357 1.26686 1.97713 0.89564 0.90887 0.89429 0.82720 0.84305 0.89576 0.93904 0.83784 0.91924 0.95572 0.91551 0.94022 0.93772 0.99705 0.99478 0.93604 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.55 71.24 0.68 -0.81 16 2 C -0.06 -1.10 5.88 -19.85 -0.12 -1.21 16 3 C -0.12 -1.86 9.70 22.26 0.22 -1.65 16 4 C -0.08 -1.58 9.70 22.27 0.22 -1.36 16 5 C -0.09 -1.84 5.39 -19.87 -0.11 -1.94 16 6 C 0.10 2.23 5.81 85.56 0.50 2.72 16 7 N -0.68 -18.84 6.49 -517.93 -3.36 -22.20 16 8 C 0.08 2.56 5.14 86.31 0.44 3.01 16 9 C -0.07 -2.84 2.55 -10.79 -0.03 -2.87 16 10 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 11 C -0.13 -4.67 8.77 71.98 0.63 -4.04 16 12 C 0.02 0.86 3.76 29.85 0.11 0.98 16 13 C -0.60 -34.70 8.41 25.60 0.22 -34.48 16 14 H 0.05 2.89 7.06 -2.91 -0.02 2.87 16 15 C -0.04 -2.52 5.46 84.65 0.46 -2.06 16 16 N -0.94 -59.41 13.65 21.45 0.29 -59.11 16 17 Si 1.12 51.12 29.90 68.60 2.05 53.17 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C -0.09 -1.86 9.44 22.29 0.21 -1.65 16 22 C -0.11 -2.08 6.22 22.31 0.14 -1.94 16 23 Br -0.05 -0.88 31.79 -20.37 -0.65 -1.53 16 24 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.94 6.64 -2.39 -0.02 0.92 16 26 H 0.09 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 30 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.34 9.10 6.98 -89.69 -0.63 8.48 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 2.01 6.68 -2.39 -0.02 1.99 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.04 1.80 6.95 -2.39 -0.02 1.78 16 37 H -0.02 -0.86 8.01 -2.39 -0.02 -0.88 16 38 H -0.01 -0.73 8.00 -2.39 -0.02 -0.75 16 39 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 40 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -65.64 345.62 2.40 -63.24 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.49 Total: 13.74 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 3.57 Total: -47.31 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -3.07 Total: -81.31 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.65 Total: -1.53 kcal Total: -65.64 2.40 -63.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.642 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds