Wall clock time and date at job start Tue Mar 31 2020 14:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 N 1.30038 * 126.18508 * 269.69327 * 14 13 12 16 16 O 1.21280 * 110.49927 * 179.80434 * 15 14 13 17 17 C 1.34220 * 109.69386 * 0.45679 * 16 15 14 18 18 C 1.47663 * 126.68410 * 179.71730 * 17 16 15 19 19 C 1.39851 * 120.17292 * 179.72684 * 18 17 16 20 20 F 1.35105 * 120.09744 * 359.97438 * 19 18 17 21 21 C 1.38216 * 119.80353 * 179.76786 * 19 18 17 22 22 C 1.38311 * 120.14880 * 0.52739 * 21 19 18 23 23 C 1.38337 * 120.34893 * 359.70232 * 22 21 19 24 24 C 1.38084 * 120.19901 * 0.04381 * 23 22 21 25 25 Cl 1.73598 * 120.07778 * 179.97438 * 24 23 22 26 26 N 1.32183 * 106.63251 * 359.72338 * 17 16 15 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 31 31 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 32 32 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 33 33 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 34 34 H 1.07994 * 119.92882 * 180.25614 * 21 19 18 35 35 H 1.08000 * 119.82657 * 179.72151 * 22 21 19 36 36 H 1.08005 * 119.90160 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 7 1.8583 -1.1495 4.4310 16 8 2.5579 -1.6518 5.2848 17 6 3.8471 -1.3753 5.0337 18 6 5.0124 -1.7970 5.8366 19 6 6.3048 -1.4348 5.4439 20 9 6.4920 -0.6976 4.3273 21 6 7.3897 -1.8296 6.2038 22 6 7.1998 -2.5899 7.3434 23 6 5.9245 -2.9558 7.7351 24 6 4.8299 -2.5649 6.9895 25 17 3.2310 -3.0264 7.4835 26 7 3.8704 -0.6519 3.9277 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7089 1.1613 -3.4844 31 1 2.9173 -1.1206 1.0287 32 1 2.7589 1.0461 2.1182 33 1 1.0871 0.6164 2.5525 34 1 8.3883 -1.5475 5.9047 35 1 8.0516 -2.8994 7.9309 36 1 5.7845 -3.5493 8.6265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602871486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:12 Heat of formation + Delta-G solvation = 55.488368 kcal Electronic energy + Delta-G solvation = -24148.536046 eV Core-core repulsion = 20190.985801 eV Total energy + Delta-G solvation = -3957.550245 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.23176 -45.40894 -39.66253 -36.97627 -36.64319 -35.30455 -33.70964 -32.36777 -31.09578 -30.57379 -28.97370 -25.87838 -24.98119 -24.93239 -23.59763 -22.62635 -21.26014 -19.86396 -18.54166 -18.01001 -17.64318 -17.05865 -16.55318 -16.42701 -15.98350 -15.42255 -15.06918 -14.80659 -14.19669 -13.95738 -13.81155 -13.73652 -13.67867 -12.69566 -12.60870 -12.38603 -12.01633 -11.93451 -11.90381 -11.67709 -11.45254 -11.25081 -10.96046 -10.89778 -10.83513 -10.55416 -10.34950 -10.14877 -9.98262 -9.30215 -9.06216 -8.87277 -8.49365 -7.42679 -6.04229 -4.10857 -0.10048 0.42103 1.46654 1.47272 2.35200 2.52538 2.90955 3.31928 3.35769 3.39003 3.47415 3.64173 4.11792 4.15139 4.40261 4.41484 4.52283 4.60534 4.90517 5.23631 5.26306 5.29822 5.38981 5.44674 5.56351 5.68158 5.91618 6.01169 6.09145 6.12315 6.82797 7.10585 7.16463 7.41708 7.74951 7.83624 8.20930 8.27370 8.28587 8.56150 8.96890 9.54857 11.02260 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.002840 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.752301 B = 9858.408188 C =10718.654324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.214 3.786 3 H 0.006 0.994 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.681 5.681 13 C 0.147 3.853 14 C 0.192 3.808 15 N -0.366 5.366 16 O 0.102 5.898 17 C 0.190 3.810 18 C -0.051 4.051 19 C 0.167 3.833 20 F -0.101 7.101 21 C -0.155 4.155 22 C -0.055 4.055 23 C -0.125 4.125 24 C 0.016 3.984 25 Cl -0.026 7.026 26 N -0.447 5.447 27 H 0.083 0.917 28 H 0.005 0.995 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.337 0.663 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.222 -6.253 24.473 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 H 0.024 0.976 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.314 5.314 13 C 0.015 3.985 14 C -0.082 4.082 15 N -0.069 5.069 16 O 0.039 5.961 17 C -0.027 4.027 18 C -0.054 4.054 19 C 0.145 3.855 20 F -0.079 7.079 21 C -0.174 4.174 22 C -0.074 4.074 23 C -0.143 4.143 24 C -0.013 4.013 25 Cl 0.004 6.996 26 N -0.181 5.181 27 H 0.102 0.898 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.605 -6.137 24.036 27.388 hybrid contribution 0.975 0.082 -1.162 1.519 sum 12.580 -6.055 22.874 26.798 Atomic orbital electron populations 1.21742 0.97575 0.99591 0.99534 1.19152 0.92774 0.92491 0.84859 0.97631 1.21178 1.31733 1.12665 0.90292 0.92192 1.24904 0.94965 0.94979 0.99036 1.69884 1.36463 1.22780 1.23689 0.86543 0.79123 0.79760 0.81894 1.20165 1.21240 1.20249 1.60814 1.32625 1.32444 1.05557 1.20266 1.00517 0.92582 0.85100 1.26053 0.84336 0.98823 0.98956 1.74626 1.18055 1.12657 1.01549 1.85591 1.15257 1.55007 1.40283 1.25700 0.86759 0.96696 0.93565 1.17075 0.88001 1.04728 0.95644 1.17464 0.91324 0.92122 0.84568 1.91687 1.95460 1.72904 1.47870 1.21279 0.98785 1.01130 0.96160 1.21204 0.97166 0.94190 0.94800 1.21086 0.90519 1.01842 1.00891 1.20855 0.88905 0.97484 0.94045 1.98455 1.20704 1.90260 1.90210 1.72253 1.20780 1.16082 1.08949 0.89825 0.97593 0.94806 0.92779 0.84602 0.92525 0.88840 0.82901 0.83172 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.19 37.16 0.34 -2.87 16 2 C 0.21 5.56 2.60 -68.86 -0.18 5.38 16 3 H 0.01 0.17 7.80 -51.93 -0.40 -0.24 16 4 C -0.52 -14.58 8.59 -34.44 -0.30 -14.88 16 5 H 0.06 1.66 7.62 -52.48 -0.40 1.26 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.99 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -15.58 6.29 -109.21 -0.69 -16.27 16 13 C 0.15 2.92 6.11 -4.97 -0.03 2.88 16 14 C 0.19 3.63 7.71 -156.56 -1.21 2.42 16 15 N -0.37 -6.77 12.15 31.20 0.38 -6.40 16 16 O 0.10 1.65 8.87 16.60 0.15 1.79 16 17 C 0.19 2.92 7.89 -13.88 -0.11 2.81 16 18 C -0.05 -0.59 5.88 -104.90 -0.62 -1.20 16 19 C 0.17 1.74 7.29 -38.99 -0.28 1.45 16 20 F -0.10 -1.34 15.84 2.25 0.04 -1.31 16 21 C -0.15 -0.97 10.01 -39.56 -0.40 -1.36 16 22 C -0.05 -0.23 10.03 -39.52 -0.40 -0.63 16 23 C -0.12 -0.68 9.81 -39.60 -0.39 -1.07 16 24 C 0.02 0.15 6.35 -39.09 -0.25 -0.10 16 25 Cl -0.03 -0.25 26.32 -51.86 -1.36 -1.62 16 26 N -0.45 -7.97 10.27 -10.18 -0.10 -8.08 16 27 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 28 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 29 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.34 7.72 8.22 -39.29 -0.32 7.40 16 32 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 33 H 0.09 1.82 7.44 -51.93 -0.39 1.44 16 34 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 36 H 0.15 0.44 8.06 -52.48 -0.42 0.02 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -31.75 331.96 -8.35 -40.10 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.46 Total: 0.69 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -3.91 Total: -5.49 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.21 Total: -55.73 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.15 Total: 1.79 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.36 Total: -1.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.75 -8.35 -40.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.590 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds