Wall clock time and date at job start Tue Mar 31 2020 14:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 N 1.30038 * 126.18508 * 269.69327 * 14 13 12 16 16 O 1.21280 * 110.49927 * 179.80434 * 15 14 13 17 17 C 1.34220 * 109.69386 * 0.45679 * 16 15 14 18 18 C 1.47663 * 126.68410 * 179.71730 * 17 16 15 19 19 C 1.39851 * 120.17292 * 179.72684 * 18 17 16 20 20 F 1.35105 * 120.09744 * 359.97438 * 19 18 17 21 21 C 1.38216 * 119.80353 * 179.76786 * 19 18 17 22 22 C 1.38311 * 120.14880 * 0.52739 * 21 19 18 23 23 C 1.38337 * 120.34893 * 359.70232 * 22 21 19 24 24 C 1.38084 * 120.19901 * 0.04381 * 23 22 21 25 25 Cl 1.73598 * 120.07778 * 179.97438 * 24 23 22 26 26 N 1.32183 * 106.63251 * 359.72338 * 17 16 15 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 31 31 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 32 32 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 33 33 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 34 34 H 1.07994 * 119.92882 * 180.25614 * 21 19 18 35 35 H 1.08000 * 119.82657 * 179.72151 * 22 21 19 36 36 H 1.08005 * 119.90160 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 7 1.8583 -1.1495 4.4310 16 8 2.5579 -1.6518 5.2848 17 6 3.8471 -1.3753 5.0337 18 6 5.0124 -1.7970 5.8366 19 6 6.3048 -1.4348 5.4439 20 9 6.4920 -0.6976 4.3273 21 6 7.3897 -1.8296 6.2038 22 6 7.1998 -2.5899 7.3434 23 6 5.9245 -2.9558 7.7351 24 6 4.8299 -2.5649 6.9895 25 17 3.2310 -3.0264 7.4835 26 7 3.8704 -0.6519 3.9277 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7089 1.1613 -3.4844 31 1 2.9173 -1.1206 1.0287 32 1 2.7589 1.0461 2.1182 33 1 1.0871 0.6164 2.5525 34 1 8.3883 -1.5475 5.9047 35 1 8.0516 -2.8994 7.9309 36 1 5.7845 -3.5493 8.6265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602871486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:12 Heat of formation + Delta-G solvation = 33.869307 kcal Electronic energy + Delta-G solvation = -24149.473519 eV Core-core repulsion = 20190.985801 eV Total energy + Delta-G solvation = -3958.487718 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.07845 -46.74288 -40.27679 -38.35555 -37.65589 -36.85472 -35.04409 -34.13350 -31.78238 -31.52409 -30.81469 -27.73463 -26.93487 -25.88534 -24.59940 -23.48894 -22.45889 -21.86670 -19.49941 -19.35061 -18.74233 -18.38626 -17.85328 -17.41383 -16.95606 -16.81617 -16.17283 -15.99212 -15.66393 -15.43118 -15.38209 -14.64775 -14.50995 -14.34882 -13.97062 -13.62781 -13.32119 -13.15697 -13.03149 -12.83447 -12.75393 -12.64763 -12.49341 -12.44365 -12.31521 -12.24457 -12.08577 -12.05037 -11.63221 -10.99053 -10.62179 -9.97275 -9.87306 -9.32958 -8.18123 -6.32866 -0.91376 -0.14593 0.35910 0.78933 1.07184 1.40613 1.42784 1.45742 1.50639 2.28507 2.30660 2.39739 2.78788 2.97095 3.10574 3.48904 3.59027 3.72095 3.74225 4.07014 4.13252 4.24160 4.37522 4.48989 4.63369 4.74292 4.76193 4.85843 5.00103 5.00965 5.09550 5.10567 5.35195 5.54114 5.58547 5.74621 6.12797 6.26598 6.54384 6.83613 6.96292 7.36926 8.87792 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.002840 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.752301 B = 9858.408188 C =10718.654324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.219 3.781 3 H -0.018 1.018 4 C -0.544 4.544 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.270 1.270 12 N -0.681 5.681 13 C 0.153 3.847 14 C 0.179 3.821 15 N -0.385 5.385 16 O 0.107 5.893 17 C 0.207 3.793 18 C -0.088 4.088 19 C 0.142 3.858 20 F -0.128 7.128 21 C -0.143 4.143 22 C -0.024 4.024 23 C -0.111 4.111 24 C 0.010 3.990 25 Cl -0.040 7.040 26 N -0.477 5.477 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.334 0.666 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.181 0.819 35 H 0.202 0.798 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.839 -7.922 26.525 31.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.111 3.889 3 H -0.001 1.001 4 C -0.582 4.582 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.195 1.195 12 N -0.313 5.313 13 C 0.022 3.978 14 C -0.094 4.094 15 N -0.089 5.089 16 O 0.044 5.956 17 C -0.009 4.009 18 C -0.092 4.092 19 C 0.120 3.880 20 F -0.106 7.106 21 C -0.162 4.162 22 C -0.042 4.042 23 C -0.129 4.129 24 C -0.019 4.019 25 Cl -0.011 7.011 26 N -0.210 5.210 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.198 0.802 35 H 0.219 0.781 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 14.230 -7.804 26.107 30.740 hybrid contribution 0.330 0.539 -1.576 1.698 sum 14.560 -7.265 24.531 29.437 Atomic orbital electron populations 1.21575 0.97276 0.99009 0.99468 1.18966 0.92962 0.91202 0.85734 1.00078 1.21476 1.32269 1.12948 0.91544 0.92533 1.25717 0.94986 0.95641 1.01961 1.70001 1.37047 1.23793 1.24505 0.85502 0.78758 0.78594 0.78129 1.19737 1.20490 1.19546 1.60708 1.32493 1.32825 1.05270 1.20122 1.00795 0.92246 0.84606 1.25778 0.85069 0.99593 0.98995 1.74571 1.18923 1.13316 1.02067 1.85550 1.15698 1.54759 1.39614 1.26438 0.87225 0.94564 0.92717 1.17317 0.87071 1.07733 0.97101 1.17955 0.92142 0.93082 0.84798 1.91618 1.95583 1.73875 1.49503 1.21703 0.98588 1.00093 0.95791 1.21840 0.98057 0.91013 0.93335 1.21594 0.89771 1.00604 1.00915 1.21063 0.89334 0.97653 0.93825 1.98452 1.22137 1.90323 1.90156 1.72226 1.20181 1.18022 1.10588 0.91761 0.95717 0.95459 0.92561 0.84878 0.92420 0.88629 0.80211 0.78098 0.79832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.99 9.19 71.98 0.66 -5.33 16 2 C 0.22 11.73 2.60 44.17 0.11 11.85 16 3 H -0.02 -1.05 7.80 -2.39 -0.02 -1.07 16 4 C -0.54 -31.13 8.59 25.60 0.22 -30.91 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.17 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -53.41 11.32 21.45 0.24 -53.17 16 8 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.68 -32.21 6.29 -499.45 -3.14 -35.36 16 13 C 0.15 6.35 6.11 85.56 0.52 6.87 16 14 C 0.18 7.06 7.71 138.53 1.07 8.13 16 15 N -0.38 -14.74 12.15 -58.57 -0.71 -15.46 16 16 O 0.11 3.57 8.87 69.48 0.62 4.18 16 17 C 0.21 6.56 7.89 87.25 0.69 7.24 16 18 C -0.09 -2.01 5.88 -20.04 -0.12 -2.12 16 19 C 0.14 2.81 7.29 22.66 0.17 2.98 16 20 F -0.13 -3.46 15.84 44.97 0.71 -2.74 16 21 C -0.14 -1.26 10.01 22.28 0.22 -1.04 16 22 C -0.02 -0.07 10.03 22.31 0.22 0.16 16 23 C -0.11 -0.72 9.81 22.26 0.22 -0.50 16 24 C 0.01 0.16 6.35 22.59 0.14 0.31 16 25 Cl -0.04 -0.74 26.32 -2.72 -0.07 -0.82 16 26 N -0.48 -17.77 10.27 -302.74 -3.11 -20.88 16 27 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 28 H 0.02 1.14 7.45 -2.39 -0.02 1.12 16 29 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.33 15.94 8.22 -89.70 -0.74 15.21 16 32 H 0.06 2.36 8.05 -2.39 -0.02 2.34 16 33 H 0.10 3.86 7.44 -2.38 -0.02 3.85 16 34 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 35 H 0.20 -1.30 8.06 -2.91 -0.02 -1.33 16 36 H 0.18 0.04 8.06 -2.91 -0.02 0.01 16 Total: -1.00 -72.30 331.96 1.56 -70.75 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.41 Total: 8.02 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 4.58 Total: -0.98 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -6.72 Total: -124.86 kcal Atomic # 8 Polarization: 3.57 SS G_CDS: 0.62 Total: 4.18 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.71 Total: -2.74 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.07 Total: -0.82 kcal Total: -72.30 1.56 -70.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.616 kcal (2) G-P(sol) polarization free energy of solvation -72.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds