Wall clock time and date at job start Tue Mar 31 2020 14:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 119.99595 * 2 1 4 4 C 1.38304 * 119.98715 * 180.23348 * 3 2 1 5 5 Br 1.89102 * 120.00843 * 179.79183 * 4 3 2 6 6 C 1.38347 * 119.98198 * 359.76673 * 4 3 2 7 7 C 1.38195 * 119.98785 * 0.02562 * 6 4 3 8 8 C 1.38229 * 119.99072 * 179.74880 * 2 1 3 9 9 C 1.50695 * 119.99035 * 0.02562 * 8 2 1 10 10 H 1.08994 * 109.47229 * 324.72159 * 9 8 2 11 11 C 1.52993 * 109.47261 * 84.72596 * 9 8 2 12 12 N 1.46904 * 109.46760 * 204.72687 * 9 8 2 13 13 C 1.46899 * 111.00029 * 155.00092 * 12 9 8 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 9 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47306 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47019 * 120.00329 * 20 18 16 23 23 H 1.48498 * 109.47326 * 240.00104 * 20 18 16 24 24 H 1.08991 * 109.47190 * 270.25195 * 1 2 3 25 25 H 1.08998 * 109.47042 * 30.25359 * 1 2 3 26 26 H 1.09007 * 109.47234 * 150.24983 * 1 2 3 27 27 H 1.07997 * 120.00925 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.00313 * 180.02562 * 6 4 3 29 29 H 1.08008 * 119.99299 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47404 * 299.99809 * 11 9 8 31 31 H 1.09004 * 109.47538 * 59.99756 * 11 9 8 32 32 H 1.09001 * 109.46997 * 179.97438 * 11 9 8 33 33 H 1.00902 * 111.00190 * 31.03792 * 12 9 8 34 34 H 1.09002 * 109.47043 * 299.99792 * 13 12 9 35 35 H 1.09001 * 109.47354 * 59.99854 * 13 12 9 36 36 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 37 37 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 38 38 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 39 39 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 40 40 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5811 1.1970 -0.0049 5 35 4.5271 2.8344 -0.0108 6 6 4.2723 -0.0014 -0.0049 7 6 3.5805 -1.1978 -0.0005 8 6 2.1979 -1.1972 0.0052 9 6 1.4440 -2.5020 0.0104 10 1 0.5357 -2.3944 0.6031 11 6 1.0746 -2.8832 -1.4245 12 7 2.2882 -3.5529 0.5944 13 6 1.4686 -4.6332 1.1594 14 6 2.3808 -5.7066 1.7563 15 6 1.5273 -6.8315 2.3453 16 6 2.4258 -7.8891 2.9327 17 1 3.4985 -7.7707 2.8906 18 6 1.8785 -9.0075 3.5249 19 7 0.5723 -9.1516 3.5767 20 14 2.9924 -10.3188 4.2524 21 1 4.4112 -9.9222 4.0662 22 1 2.7054 -10.4633 5.7023 23 1 2.7459 -11.6133 3.5676 24 1 -0.3633 0.0045 1.0276 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3634 -0.8923 -0.5100 27 1 1.6582 2.1325 0.0004 28 1 5.3523 -0.0020 -0.0083 29 1 4.1201 -2.1335 -0.0010 30 1 0.4483 -2.1035 -1.8579 31 1 1.9831 -2.9908 -2.0173 32 1 0.5297 -3.8273 -1.4208 33 1 2.9121 -3.1710 1.2894 34 1 0.8231 -4.2295 1.9395 35 1 0.8560 -5.0738 0.3729 36 1 3.0260 -6.1102 0.9759 37 1 2.9938 -5.2664 2.5428 38 1 0.8824 -6.4276 3.1258 39 1 0.9141 -7.2720 1.5591 40 1 0.1873 -9.9386 3.9929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603432693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:24 Heat of formation + Delta-G solvation = 1.531613 kcal Electronic energy + Delta-G solvation = -18915.888221 eV Core-core repulsion = 15968.571197 eV Total energy + Delta-G solvation = -2947.317023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15699 -36.91536 -34.29372 -33.28161 -32.27613 -31.46946 -29.70121 -28.67318 -27.33125 -25.95466 -23.53555 -22.73906 -21.41099 -20.45261 -19.90437 -16.88546 -16.40139 -16.15280 -15.39196 -15.03031 -14.51372 -14.44509 -14.19738 -13.94478 -13.48137 -13.35804 -12.77218 -12.69188 -12.56888 -12.28530 -12.11648 -11.84125 -11.65871 -11.54737 -11.20119 -10.91847 -10.83374 -10.71720 -10.57309 -10.52893 -10.45662 -9.70573 -9.35187 -9.08067 -9.04866 -8.72411 -8.34611 -8.25923 -5.99545 -4.01476 0.83543 1.05914 1.37025 3.31492 3.32910 3.38941 3.43435 4.20987 4.45956 4.49189 4.53823 4.63687 4.92363 5.03439 5.20542 5.27959 5.30330 5.36469 5.38224 5.48170 5.63020 5.69667 5.75044 5.81480 5.86977 5.93556 5.97525 6.07317 6.21506 6.29912 6.35124 6.59613 6.70270 6.76747 7.12793 7.29524 7.55497 7.68820 7.83314 8.00961 8.44217 9.05992 9.62635 11.11964 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.002158 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.140064 B =12971.509259 C =13755.388359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.093 4.093 4 C -0.091 4.091 5 Br -0.060 7.060 6 C -0.096 4.096 7 C -0.097 4.097 8 C -0.068 4.068 9 C 0.119 3.881 10 H 0.056 0.944 11 C -0.135 4.135 12 N -0.686 5.686 13 C 0.059 3.941 14 C -0.107 4.107 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.339 0.661 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 26.685 -10.067 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.077 4.077 3 C -0.113 4.113 4 C -0.170 4.170 5 Br 0.026 6.974 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.068 4.068 9 C 0.009 3.991 10 H 0.074 0.926 11 C -0.193 4.193 12 N -0.318 5.318 13 C -0.069 4.069 14 C -0.145 4.145 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.163 0.837 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.862 26.857 -10.610 29.133 hybrid contribution 0.025 -0.667 1.287 1.449 sum 3.887 26.190 -9.323 28.070 Atomic orbital electron populations 1.20913 0.90598 1.03383 1.02869 1.19746 0.96377 0.91899 0.99670 1.20908 0.91934 0.98309 1.00167 1.21745 0.94677 0.91602 1.08961 1.96700 1.75381 1.27543 1.97791 1.21129 1.00305 0.90813 0.99358 1.21183 0.93685 0.98288 0.98401 1.20083 0.94035 0.94475 0.98243 1.20481 0.94303 0.87138 0.97189 0.92607 1.21783 1.01729 1.01208 0.94594 1.60731 1.20991 1.10972 1.39095 1.22189 0.95639 0.91896 0.97220 1.21617 0.98242 0.95699 0.98900 1.19065 0.94937 0.91933 0.95644 1.21292 0.93160 1.04322 1.36820 0.92623 1.25036 0.94982 0.98299 0.96263 1.69977 1.10023 1.28675 1.44953 0.86544 0.80988 0.81723 0.78797 1.19716 1.21063 1.21013 0.90763 0.91286 0.90582 0.85212 0.85034 0.83727 0.92675 0.91799 0.91836 0.84174 0.95669 0.91303 0.92498 0.93681 0.96836 0.96580 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.22 36.01 0.33 -0.63 16 2 C -0.08 -0.75 5.88 -104.63 -0.62 -1.36 16 3 C -0.09 -0.90 9.44 -39.56 -0.37 -1.27 16 4 C -0.09 -0.91 6.22 -39.52 -0.25 -1.16 16 5 Br -0.06 -0.54 33.70 -68.01 -2.29 -2.83 16 6 C -0.10 -0.97 9.79 -39.56 -0.39 -1.35 16 7 C -0.10 -1.03 8.86 -39.59 -0.35 -1.38 16 8 C -0.07 -0.73 4.93 -104.62 -0.52 -1.25 16 9 C 0.12 1.38 2.13 -68.87 -0.15 1.24 16 10 H 0.06 0.66 6.66 -51.93 -0.35 0.32 16 11 C -0.14 -1.49 9.20 37.15 0.34 -1.15 16 12 N -0.69 -9.42 5.57 -107.96 -0.60 -10.02 16 13 C 0.06 0.98 5.48 -3.83 -0.02 0.96 16 14 C -0.11 -2.17 5.41 -26.74 -0.14 -2.31 16 15 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 16 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.08 0.60 5.40 -51.93 -0.28 0.32 16 27 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.15 1.52 6.97 -52.48 -0.37 1.15 16 30 H 0.05 0.51 6.88 -51.93 -0.36 0.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 33 H 0.34 4.49 7.26 -39.29 -0.29 4.20 16 34 H 0.03 0.42 8.06 -51.93 -0.42 0.01 16 35 H 0.07 1.16 7.44 -51.93 -0.39 0.78 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -29.80 344.75 -10.83 -40.63 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.17 Total: -0.59 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.68 Total: -22.79 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.14 Total: -36.35 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.29 Total: -2.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.80 -10.83 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603432693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.165 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds