Wall clock time and date at job start Tue Mar 31 2020 14:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 119.99595 * 2 1 4 4 C 1.38304 * 119.98715 * 180.23348 * 3 2 1 5 5 Br 1.89102 * 120.00843 * 179.79183 * 4 3 2 6 6 C 1.38347 * 119.98198 * 359.76673 * 4 3 2 7 7 C 1.38195 * 119.98785 * 0.02562 * 6 4 3 8 8 C 1.38229 * 119.99072 * 179.74880 * 2 1 3 9 9 C 1.50695 * 119.99035 * 0.02562 * 8 2 1 10 10 H 1.08994 * 109.47229 * 324.72159 * 9 8 2 11 11 C 1.52993 * 109.47261 * 84.72596 * 9 8 2 12 12 N 1.46904 * 109.46760 * 204.72687 * 9 8 2 13 13 C 1.46899 * 111.00029 * 155.00092 * 12 9 8 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 9 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47306 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47019 * 120.00329 * 20 18 16 23 23 H 1.48498 * 109.47326 * 240.00104 * 20 18 16 24 24 H 1.08991 * 109.47190 * 270.25195 * 1 2 3 25 25 H 1.08998 * 109.47042 * 30.25359 * 1 2 3 26 26 H 1.09007 * 109.47234 * 150.24983 * 1 2 3 27 27 H 1.07997 * 120.00925 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.00313 * 180.02562 * 6 4 3 29 29 H 1.08008 * 119.99299 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47404 * 299.99809 * 11 9 8 31 31 H 1.09004 * 109.47538 * 59.99756 * 11 9 8 32 32 H 1.09001 * 109.46997 * 179.97438 * 11 9 8 33 33 H 1.00902 * 111.00190 * 31.03792 * 12 9 8 34 34 H 1.09002 * 109.47043 * 299.99792 * 13 12 9 35 35 H 1.09001 * 109.47354 * 59.99854 * 13 12 9 36 36 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 37 37 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 38 38 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 39 39 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 40 40 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5811 1.1970 -0.0049 5 35 4.5271 2.8344 -0.0108 6 6 4.2723 -0.0014 -0.0049 7 6 3.5805 -1.1978 -0.0005 8 6 2.1979 -1.1972 0.0052 9 6 1.4440 -2.5020 0.0104 10 1 0.5357 -2.3944 0.6031 11 6 1.0746 -2.8832 -1.4245 12 7 2.2882 -3.5529 0.5944 13 6 1.4686 -4.6332 1.1594 14 6 2.3808 -5.7066 1.7563 15 6 1.5273 -6.8315 2.3453 16 6 2.4258 -7.8891 2.9327 17 1 3.4985 -7.7707 2.8906 18 6 1.8785 -9.0075 3.5249 19 7 0.5723 -9.1516 3.5767 20 14 2.9924 -10.3188 4.2524 21 1 4.4112 -9.9222 4.0662 22 1 2.7054 -10.4633 5.7023 23 1 2.7459 -11.6133 3.5676 24 1 -0.3633 0.0045 1.0276 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3634 -0.8923 -0.5100 27 1 1.6582 2.1325 0.0004 28 1 5.3523 -0.0020 -0.0083 29 1 4.1201 -2.1335 -0.0010 30 1 0.4483 -2.1035 -1.8579 31 1 1.9831 -2.9908 -2.0173 32 1 0.5297 -3.8273 -1.4208 33 1 2.9121 -3.1710 1.2894 34 1 0.8231 -4.2295 1.9395 35 1 0.8560 -5.0738 0.3729 36 1 3.0260 -6.1102 0.9759 37 1 2.9938 -5.2664 2.5428 38 1 0.8824 -6.4276 3.1258 39 1 0.9141 -7.2720 1.5591 40 1 0.1873 -9.9386 3.9929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603432693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:24 Heat of formation + Delta-G solvation = -13.646914 kcal Electronic energy + Delta-G solvation = -18916.546411 eV Core-core repulsion = 15968.571197 eV Total energy + Delta-G solvation = -2947.975214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95926 -38.04429 -35.89880 -34.49337 -33.55971 -32.52620 -31.01623 -29.52820 -28.15287 -27.60778 -24.77928 -23.99236 -22.43873 -21.89464 -20.99133 -18.50459 -17.70161 -17.20396 -16.55344 -16.43204 -15.90378 -15.35935 -15.23260 -15.17597 -14.49019 -14.35855 -14.14935 -13.68277 -13.55749 -13.42417 -13.33271 -13.14568 -12.96095 -12.72781 -12.51850 -12.44762 -12.25328 -12.05183 -11.71819 -11.58952 -11.46514 -11.34619 -11.26382 -11.06146 -10.55354 -9.82747 -9.54001 -9.37527 -8.20000 -6.30622 0.05130 0.30434 0.62318 1.40285 1.40557 1.54082 2.41215 2.55478 3.13251 3.13772 3.62479 3.78001 3.91601 4.19364 4.23044 4.28192 4.29524 4.42143 4.52928 4.55232 4.69051 4.73993 4.77925 4.86984 4.92760 4.96450 4.99397 5.12622 5.19807 5.22525 5.25142 5.27903 5.39486 5.51531 5.55827 5.76448 5.83535 5.87025 6.08444 6.27976 6.43939 6.86724 7.38653 8.92114 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.002158 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.140064 B =12971.509259 C =13755.388359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.096 4.096 4 C -0.099 4.099 5 Br -0.052 7.052 6 C -0.102 4.102 7 C -0.104 4.104 8 C -0.078 4.078 9 C 0.122 3.878 10 H 0.057 0.943 11 C -0.132 4.132 12 N -0.684 5.684 13 C 0.073 3.927 14 C -0.092 4.092 15 C 0.025 3.975 16 C -0.541 4.541 17 H 0.059 0.941 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.344 0.656 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.049 0.951 38 H -0.010 1.010 39 H -0.008 1.008 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 27.661 -10.227 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.079 4.079 3 C -0.116 4.116 4 C -0.178 4.178 5 Br 0.034 6.966 6 C -0.121 4.121 7 C -0.123 4.123 8 C -0.079 4.079 9 C 0.013 3.987 10 H 0.075 0.925 11 C -0.190 4.190 12 N -0.316 5.316 13 C -0.056 4.056 14 C -0.130 4.130 15 C -0.013 4.013 16 C -0.579 4.579 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.203 1.203 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.604 27.853 -10.778 30.218 hybrid contribution -0.212 -0.902 1.317 1.610 sum 4.392 26.951 -9.461 28.899 Atomic orbital electron populations 1.20964 0.89256 1.04235 1.03334 1.19950 0.97410 0.91535 0.98980 1.21131 0.91909 0.98915 0.99628 1.21919 0.95127 0.91966 1.08779 1.96706 1.75269 1.26909 1.97761 1.21267 1.00946 0.90675 0.99257 1.21211 0.93759 0.98513 0.98809 1.20040 0.94136 0.94336 0.99407 1.20473 0.94049 0.86950 0.97270 0.92503 1.21765 1.01658 1.01405 0.94188 1.60651 1.20899 1.11261 1.38791 1.21870 0.94906 0.91882 0.96912 1.21361 0.97823 0.95051 0.98746 1.18969 0.94787 0.93200 0.94296 1.21732 0.93701 1.05332 1.37140 0.92289 1.25988 0.96534 1.00816 0.96623 1.70101 1.11948 1.29616 1.45773 0.85404 0.79204 0.78495 0.77983 1.18613 1.20359 1.20342 0.90433 0.89590 0.90614 0.83620 0.83992 0.83970 0.90782 0.92369 0.92786 0.83703 0.95889 0.91652 0.92771 0.93261 0.99127 0.98960 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.22 71.24 0.66 -1.01 16 2 C -0.08 -1.39 5.88 -19.87 -0.12 -1.51 16 3 C -0.10 -1.66 9.44 22.28 0.21 -1.45 16 4 C -0.10 -1.83 6.22 22.31 0.14 -1.69 16 5 Br -0.05 -0.87 33.70 -20.37 -0.69 -1.55 16 6 C -0.10 -1.92 9.79 22.29 0.22 -1.70 16 7 C -0.10 -2.11 8.86 22.26 0.20 -1.91 16 8 C -0.08 -1.61 4.93 -19.86 -0.10 -1.70 16 9 C 0.12 2.72 2.13 44.16 0.09 2.81 16 10 H 0.06 1.28 6.66 -2.39 -0.02 1.27 16 11 C -0.13 -2.77 9.20 71.98 0.66 -2.11 16 12 N -0.68 -18.31 5.57 -495.47 -2.76 -21.07 16 13 C 0.07 2.43 5.48 86.30 0.47 2.91 16 14 C -0.09 -3.75 5.41 30.59 0.17 -3.59 16 15 C 0.03 1.33 4.97 29.84 0.15 1.48 16 16 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 20 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 0.88 8.09 -2.39 -0.02 0.87 16 26 H 0.08 1.04 5.40 -2.38 -0.01 1.03 16 27 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 28 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.14 2.89 6.97 -2.91 -0.02 2.87 16 30 H 0.07 1.25 6.88 -2.39 -0.02 1.24 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.22 7.45 -2.39 -0.02 1.21 16 33 H 0.34 8.80 7.26 -89.69 -0.65 8.15 16 34 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16 35 H 0.06 2.22 7.44 -2.39 -0.02 2.20 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -63.30 344.75 2.69 -60.61 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.37 Total: 12.32 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 3.45 Total: -40.01 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.47 Total: -77.94 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -0.69 Total: -1.55 kcal Total: -63.30 2.69 -60.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603432693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.967 kcal (2) G-P(sol) polarization free energy of solvation -63.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds