Wall clock time and date at job start Tue Mar 31 2020 13:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48495 * 109.47338 * 270.00305 * 3 2 1 5 5 H 1.48501 * 109.47121 * 30.00206 * 3 2 1 6 6 H 1.48503 * 109.47064 * 150.00344 * 3 2 1 7 7 C 1.39943 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99974 * 191.66461 * 7 2 1 9 9 C 1.41394 * 119.99728 * 11.67391 * 7 2 1 10 10 C 1.40732 * 120.24949 * 28.54712 * 9 7 2 11 11 C 1.37597 * 119.74806 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24678 * 0.02562 * 11 10 9 13 13 C 1.38604 * 120.50246 * 359.97438 * 12 11 10 14 14 S 1.76205 * 119.87787 * 179.97438 * 13 12 11 15 15 O 1.42094 * 106.40286 * 203.54157 * 14 13 12 16 16 O 1.42100 * 106.39960 * 336.45743 * 14 13 12 17 17 N 1.65595 * 107.21949 * 89.99623 * 14 13 12 18 18 C 1.46511 * 119.99912 * 66.03111 * 17 14 13 19 19 C 1.50703 * 112.84535 * 294.46970 * 18 17 14 20 20 O 1.20820 * 119.99856 * 144.18800 * 19 18 17 21 21 O 1.34231 * 120.00295 * 324.18802 * 19 18 17 22 22 C 1.53776 * 113.61429 * 163.27335 * 18 17 14 23 23 C 1.54048 * 86.98743 * 270.83897 * 22 18 17 24 24 C 1.53776 * 113.61407 * 65.66299 * 18 17 14 25 25 C 1.37643 * 120.25025 * 0.25171 * 13 12 11 26 26 H 0.97002 * 120.00264 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.12389 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.87884 * 179.97438 * 11 10 9 29 29 H 1.08000 * 119.74534 * 179.97438 * 12 11 10 30 30 H 0.96996 * 120.00692 * 246.03072 * 17 14 13 31 31 H 0.96697 * 116.99951 * 179.97438 * 21 19 18 32 32 H 1.09008 * 113.61348 * 25.43293 * 22 18 17 33 33 H 1.09007 * 113.61223 * 156.33045 * 22 18 17 34 34 H 1.08998 * 113.61786 * 220.02880 * 23 22 18 35 35 H 1.08994 * 113.68888 * 89.12801 * 23 22 18 36 36 H 1.08998 * 113.61319 * 203.66143 * 24 18 17 37 37 H 1.08999 * 113.61528 * 334.48762 * 24 18 17 38 38 H 1.08004 * 120.12836 * 179.74203 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0712 -1.2217 0.1886 9 6 1.3229 -2.4236 -0.2489 10 6 0.1659 -2.4326 -1.0501 11 6 -0.4930 -3.6176 -1.2846 12 6 -0.0214 -4.7997 -0.7344 13 6 1.1170 -4.8028 0.0562 14 16 1.7015 -6.3145 0.7477 15 8 2.4734 -5.9624 1.8875 16 8 0.5821 -7.1878 0.8068 17 7 2.7551 -6.9779 -0.3441 18 6 4.0212 -6.3039 -0.6428 19 6 3.8293 -4.9736 -1.3245 20 8 4.5750 -4.0555 -1.0780 21 8 2.8300 -4.8088 -2.2054 22 6 5.0520 -7.2092 -1.3376 23 6 5.5335 -7.6047 0.0712 24 6 4.9873 -6.2500 0.5524 25 6 1.7896 -3.6285 0.3080 26 1 -0.4850 0.8400 0.0004 27 1 -0.2033 -1.5129 -1.4792 28 1 -1.3813 -3.6268 -1.8988 29 1 -0.5451 -5.7251 -0.9234 30 1 2.5341 -7.8127 -0.7858 31 1 2.7466 -3.9377 -2.6167 32 1 4.6047 -8.0324 -1.8949 33 1 5.7958 -6.6605 -1.9153 34 1 6.6168 -7.6928 0.1537 35 1 5.0060 -8.4617 0.4898 36 1 5.7136 -5.4396 0.4905 37 1 4.4879 -6.2979 1.5200 38 1 2.6741 -3.6326 0.9278 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619708807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:25 Heat of formation + Delta-G solvation = -139.782744 kcal Electronic energy + Delta-G solvation = -26991.326178 eV Core-core repulsion = 23118.519603 eV Total energy + Delta-G solvation = -3872.806576 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86417 -39.59117 -39.24778 -38.27340 -36.99824 -36.96903 -35.63424 -33.84004 -31.88443 -31.60462 -27.64713 -27.33028 -26.82450 -23.68598 -23.04930 -22.79314 -21.07266 -20.36480 -19.57938 -19.02753 -18.69271 -18.22570 -17.73085 -16.98192 -16.80107 -16.58361 -16.37866 -16.06896 -15.61758 -15.24269 -15.06517 -14.61284 -14.31380 -13.74624 -13.62672 -13.51880 -13.34511 -13.15223 -13.08551 -13.06368 -13.01329 -12.80349 -12.62557 -12.42642 -12.37098 -12.21543 -12.04505 -11.75032 -11.53251 -11.36007 -11.27898 -11.17122 -10.57826 -9.80957 -9.49036 -8.69066 -6.46443 -0.61349 0.40812 0.84047 1.11989 1.34314 1.42946 1.46842 1.95337 2.07789 2.17017 2.54419 2.72219 3.24559 3.31219 3.43398 3.53393 3.78678 3.97043 4.14906 4.31559 4.44401 4.69556 4.74718 4.76259 4.85942 4.91400 4.98743 5.05093 5.09200 5.17462 5.22479 5.41317 5.42599 5.56481 5.64853 5.90163 5.96816 6.01382 6.13392 6.54731 6.81593 6.86973 6.95605 8.28189 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.005421 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.458276 B = 5163.554034 C = 5982.474014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.496 4.496 8 H 0.066 0.934 9 C 0.070 3.930 10 C -0.124 4.124 11 C -0.121 4.121 12 C -0.120 4.120 13 C -0.636 4.636 14 S 2.708 3.292 15 O -0.984 6.984 16 O -0.980 6.980 17 N -1.067 6.067 18 C 0.146 3.854 19 C 0.469 3.531 20 O -0.532 6.532 21 O -0.496 6.496 22 C -0.103 4.103 23 C -0.119 4.119 24 C -0.161 4.161 25 C -0.134 4.134 26 H 0.289 0.711 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.438 0.562 31 H 0.412 0.588 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.508 -12.806 -5.923 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.526 4.526 8 H 0.084 0.916 9 C 0.067 3.933 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.141 4.141 13 C -0.725 4.725 14 S 2.802 3.198 15 O -0.974 6.974 16 O -0.970 6.970 17 N -0.829 5.829 18 C 0.054 3.946 19 C 0.309 3.691 20 O -0.420 6.420 21 O -0.306 6.306 22 C -0.141 4.141 23 C -0.156 4.156 24 C -0.200 4.200 25 C -0.155 4.155 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.278 0.722 31 H 0.271 0.729 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.341 -13.007 -4.763 15.677 hybrid contribution -0.284 2.246 -0.723 2.376 sum 7.056 -10.762 -5.486 13.990 Atomic orbital electron populations 1.69780 1.08537 1.30593 1.36926 1.26613 0.95591 1.04107 0.91342 0.85245 0.78805 0.76271 0.79688 1.18200 1.19089 1.19121 1.19732 0.96042 0.91828 1.45041 0.91570 1.17873 0.92812 0.92462 0.90126 1.21634 0.97312 0.97238 0.98165 1.21105 0.99733 0.92560 1.00614 1.20396 0.95593 0.98493 0.99632 1.30055 1.08503 1.17548 1.16427 1.01170 0.72304 0.73188 0.73186 1.93494 1.70733 1.84737 1.48436 1.93519 1.51653 1.65298 1.86562 1.54823 1.28946 1.35948 1.63225 1.21389 0.85687 0.87772 0.99721 1.24106 0.77341 0.90619 0.76993 1.90712 1.46200 1.42849 1.62256 1.84503 1.49855 1.41918 1.54357 1.23291 0.94699 0.97957 0.98169 1.22885 1.03139 0.95488 0.94070 1.23766 0.97739 1.01274 0.97223 1.20617 1.00610 0.92812 1.01433 0.89978 0.86960 0.85514 0.85126 0.72217 0.72883 0.86349 0.87406 0.87990 0.87920 0.88325 0.89101 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.69 10.88 21.83 0.24 -42.45 16 2 C 0.04 1.88 5.24 85.26 0.45 2.33 16 3 Si 0.98 38.94 29.58 68.60 2.03 40.97 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.50 -26.88 9.06 23.46 0.21 -26.67 16 8 H 0.07 3.65 7.87 -2.91 -0.02 3.62 16 9 C 0.07 3.67 5.55 -21.29 -0.12 3.55 16 10 C -0.12 -6.03 8.66 22.73 0.20 -5.83 16 11 C -0.12 -5.09 10.02 22.22 0.22 -4.87 16 12 C -0.12 -4.86 9.53 22.46 0.21 -4.65 16 13 C -0.64 -26.81 3.91 22.22 0.09 -26.73 16 14 S 2.71 96.54 5.70 -56.49 -0.32 96.22 16 15 O -0.98 -40.13 14.46 -128.00 -1.85 -41.98 16 16 O -0.98 -36.94 17.27 -128.00 -2.21 -39.15 16 17 N -1.07 -26.84 5.48 -153.08 -0.84 -27.68 16 18 C 0.15 3.78 1.25 3.38 0.00 3.78 16 19 C 0.47 15.46 4.93 71.24 0.35 15.81 16 20 O -0.53 -21.20 16.59 21.98 0.36 -20.83 16 21 O -0.50 -15.55 11.44 -51.42 -0.59 -16.13 16 22 C -0.10 -1.60 7.38 31.21 0.23 -1.37 16 23 C -0.12 -1.85 8.00 31.21 0.25 -1.60 16 24 C -0.16 -4.22 6.94 31.12 0.22 -4.00 16 25 C -0.13 -6.50 6.88 22.73 0.16 -6.34 16 26 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 27 H 0.11 5.71 6.24 -2.91 -0.02 5.69 16 28 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.13 4.60 7.60 -2.91 -0.02 4.58 16 30 H 0.44 7.55 8.79 -96.75 -0.85 6.70 16 31 H 0.41 12.45 9.10 -74.06 -0.67 11.78 16 32 H 0.12 1.16 8.09 -2.38 -0.02 1.14 16 33 H 0.11 1.59 8.09 -2.38 -0.02 1.57 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 2.76 7.35 -2.39 -0.02 2.74 16 37 H 0.09 2.79 5.69 -2.39 -0.01 2.78 16 38 H 0.09 4.63 7.60 -2.91 -0.02 4.61 16 Total: -1.00 -70.07 329.11 -1.10 -71.17 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -0.39 Total: 36.44 kcal Atomic # 6 Polarization: -59.05 SS G_CDS: 2.47 Total: -56.58 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -0.60 Total: -70.13 kcal Atomic # 8 Polarization: -113.81 SS G_CDS: -4.28 Total: -118.10 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: 96.54 SS G_CDS: -0.32 Total: 96.22 kcal Total: -70.07 -1.10 -71.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619708807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.609 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds