Wall clock time and date at job start Tue Mar 31 2020 13:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00399 * 2 1 4 4 H 1.48499 * 109.47290 * 270.00788 * 3 2 1 5 5 H 1.48510 * 109.46776 * 30.00509 * 3 2 1 6 6 H 1.48501 * 109.47242 * 150.00212 * 3 2 1 7 7 C 1.38655 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00222 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00154 * 174.97554 * 9 7 2 11 11 C 1.38945 * 120.03668 * 185.37225 * 10 9 7 12 12 C 1.38119 * 120.07481 * 180.02562 * 11 10 9 13 13 C 1.38201 * 120.13689 * 359.97438 * 12 11 10 14 14 C 1.38923 * 120.07009 * 0.02562 * 13 12 11 15 15 N 1.39914 * 120.03921 * 179.97438 * 14 13 12 16 16 C 1.34774 * 120.00201 * 324.88770 * 15 14 13 17 17 O 1.21290 * 119.99693 * 4.22907 * 16 15 14 18 18 C 1.50702 * 120.00220 * 184.22807 * 16 15 14 19 19 H 1.08997 * 110.28298 * 37.88422 * 18 16 15 20 20 C 1.54170 * 110.32006 * 275.66316 * 18 16 15 21 21 C 1.53876 * 108.70487 * 213.19109 * 20 18 16 22 22 C 1.55050 * 106.62502 * 47.17770 * 21 20 18 23 23 S 1.82917 * 110.31691 * 160.00336 * 18 16 15 24 24 O 1.42110 * 109.35154 * 234.42461 * 23 18 16 25 25 O 1.42092 * 109.35736 * 7.62617 * 23 18 16 26 26 C 1.38732 * 120.02989 * 5.62699 * 10 9 7 27 27 H 0.97006 * 119.99996 * 359.97438 * 1 2 3 28 28 H 1.08008 * 119.96393 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.93712 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.96758 * 180.02562 * 13 12 11 31 31 H 0.97002 * 120.00020 * 144.61136 * 15 14 13 32 32 H 1.08999 * 109.64319 * 333.04292 * 20 18 16 33 33 H 1.09002 * 109.64505 * 93.33559 * 20 18 16 34 34 H 1.08998 * 110.02402 * 287.89040 * 21 20 18 35 35 H 1.08997 * 110.02502 * 166.47484 * 21 20 18 36 36 H 1.08996 * 110.78882 * 199.29797 * 22 21 20 37 37 H 1.09006 * 110.95048 * 75.91195 * 22 21 20 38 38 H 1.08006 * 120.07349 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1070 11 6 1.4353 -4.7351 -0.2259 12 6 2.1825 -5.8916 -0.3337 13 6 3.5631 -5.8291 -0.3243 14 6 4.2036 -4.6021 -0.2057 15 7 5.6013 -4.5396 -0.1958 16 6 6.3156 -5.5226 0.3872 17 8 5.7514 -6.4984 0.8351 18 6 7.8154 -5.4095 0.4824 19 1 8.1043 -4.3787 0.6877 20 6 8.4734 -5.9024 -0.8218 21 6 9.8224 -6.5573 -0.4771 22 6 9.5594 -7.5140 0.7144 23 16 8.4546 -6.5204 1.7874 24 8 9.2391 -5.7685 2.7033 25 8 7.3985 -7.3422 2.2653 26 6 3.4555 -3.4390 -0.0919 27 1 -0.4850 0.8401 0.0004 28 1 0.3565 -4.7872 -0.2331 29 1 1.6870 -6.8468 -0.4256 30 1 4.1447 -6.7352 -0.4092 31 1 6.0563 -3.7908 -0.6119 32 1 7.8248 -6.6323 -1.3063 33 1 8.6363 -5.0582 -1.4918 34 1 10.5454 -5.7938 -0.1901 35 1 10.1936 -7.1205 -1.3333 36 1 10.4889 -7.7526 1.2314 37 1 9.0595 -8.4235 0.3810 38 1 3.9510 -2.4842 0.0049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694071053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:22 Heat of formation + Delta-G solvation = -92.342186 kcal Electronic energy + Delta-G solvation = -25020.277852 eV Core-core repulsion = 21149.528453 eV Total energy + Delta-G solvation = -3870.749399 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.45850 -38.79173 -37.26746 -36.85004 -36.35838 -35.95716 -34.34358 -32.28323 -31.07185 -29.28564 -28.46398 -26.17634 -25.31740 -22.65853 -22.03822 -21.83128 -20.30464 -19.08208 -18.17007 -17.95282 -17.49295 -16.92649 -16.51322 -15.73326 -15.49387 -15.30943 -14.99943 -14.70137 -14.40275 -14.31545 -14.08298 -13.94032 -13.60391 -13.13271 -12.98768 -12.65475 -12.52113 -12.31563 -12.27403 -12.12954 -11.76516 -11.63399 -11.58397 -11.20645 -11.03397 -11.03004 -10.83578 -10.64129 -10.48008 -10.00431 -9.63540 -9.46559 -8.84337 -7.81437 -7.21487 -6.47975 -4.08060 -0.32309 1.83160 2.20077 2.32234 2.58026 2.88472 3.09523 3.09798 3.14775 3.32896 3.73290 3.92805 3.94416 4.09936 4.19097 4.30624 4.46724 4.54107 4.67340 4.97762 5.05663 5.06450 5.23021 5.24759 5.30964 5.40784 5.66298 5.95312 5.99942 6.17098 6.22499 6.58221 6.86450 6.92028 7.06642 7.26997 7.37948 7.53335 7.74407 7.95600 8.09486 8.97175 9.67148 10.69999 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.003116 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.118256 B = 8983.147004 C = 9850.616700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.090 0.910 9 O -0.175 6.175 10 C 0.167 3.833 11 C -0.196 4.196 12 C -0.064 4.064 13 C -0.204 4.204 14 C 0.172 3.828 15 N -0.658 5.658 16 C 0.528 3.472 17 O -0.478 6.478 18 C -0.602 4.602 19 H 0.161 0.839 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.592 4.592 23 S 2.408 3.592 24 O -0.933 6.933 25 O -0.888 6.888 26 C -0.254 4.254 27 H 0.270 0.730 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.408 0.592 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.739 -11.035 -3.950 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.108 0.892 9 O -0.079 6.079 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.083 4.083 13 C -0.224 4.224 14 C 0.080 3.920 15 N -0.303 5.303 16 C 0.312 3.688 17 O -0.350 6.350 18 C -0.710 4.710 19 H 0.179 0.821 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.722 4.722 23 S 2.586 3.414 24 O -0.930 6.930 25 O -0.885 6.885 26 C -0.276 4.276 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.243 0.757 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.726 -11.548 -2.608 23.006 hybrid contribution 1.016 1.528 -1.066 2.122 sum 20.742 -10.020 -3.674 23.327 Atomic orbital electron populations 1.70036 1.05944 1.27698 1.45934 1.25279 0.95837 0.98794 0.96539 0.85724 0.78918 0.80182 0.78646 1.19895 1.20205 1.19281 1.21271 0.91661 0.80866 1.53195 0.89245 1.84010 1.33954 1.11332 1.78577 1.19062 0.89354 0.88218 0.92076 1.20297 0.99833 0.90267 1.11147 1.20567 0.93096 0.96926 0.97722 1.20696 0.94467 0.96375 1.10904 1.17409 0.80414 0.94414 0.99780 1.43326 1.05668 1.25006 1.56291 1.19185 0.86366 0.83993 0.79297 1.90984 1.70433 1.28973 1.44650 1.30831 1.02649 1.19043 1.18523 0.82142 1.21922 0.95607 1.02571 0.94052 1.22201 0.97487 0.97742 0.98249 1.30711 1.16360 1.12110 1.12979 1.08949 0.77182 0.78079 0.77197 1.93635 1.70315 1.71365 1.57647 1.93731 1.52805 1.65193 1.76797 1.20824 0.94009 0.97570 1.15193 0.91971 0.86287 0.86459 0.85694 0.75674 0.89056 0.88167 0.89180 0.88027 0.84358 0.84051 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 8 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 9 O -0.18 -4.94 9.76 0.04 0.00 -4.94 16 10 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 11 C -0.20 -4.17 9.99 -39.36 -0.39 -4.56 16 12 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 13 C -0.20 -3.85 8.69 -39.34 -0.34 -4.19 16 14 C 0.17 3.22 6.29 -83.72 -0.53 2.69 16 15 N -0.66 -9.31 5.33 -9.88 -0.05 -9.36 16 16 C 0.53 7.24 6.75 -10.99 -0.07 7.17 16 17 O -0.48 -8.46 11.67 -18.22 -0.21 -8.67 16 18 C -0.60 -5.13 3.61 -27.27 -0.10 -5.23 16 19 H 0.16 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.10 -0.53 5.93 -25.66 -0.15 -0.69 16 21 C -0.12 -0.43 6.48 -25.19 -0.16 -0.60 16 22 C -0.59 -3.06 7.31 38.24 0.28 -2.78 16 23 S 2.41 24.01 5.92 -107.50 -0.64 23.37 16 24 O -0.93 -11.72 18.15 -57.71 -1.05 -12.77 16 25 O -0.89 -13.39 15.41 -67.05 -1.03 -14.42 16 26 C -0.25 -5.41 9.08 -39.21 -0.36 -5.76 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 29 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.13 2.27 6.23 -52.48 -0.33 1.95 16 31 H 0.41 4.30 8.82 -40.82 -0.36 3.94 16 32 H 0.09 0.52 7.85 -51.93 -0.41 0.11 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.13 2.69 5.64 -52.48 -0.30 2.39 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -38.43 333.58 -8.69 -47.12 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.18 Total: 5.13 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -2.29 Total: -21.30 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.71 Total: -33.60 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.29 Total: -40.80 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 24.01 SS G_CDS: -0.64 Total: 23.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.43 -8.69 -47.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694071053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.223 kcal (2) G-P(sol) polarization free energy of solvation -38.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds