Wall clock time and date at job start Tue Mar 31 2020 13:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00399 * 2 1 4 4 H 1.48499 * 109.47290 * 270.00788 * 3 2 1 5 5 H 1.48510 * 109.46776 * 30.00509 * 3 2 1 6 6 H 1.48501 * 109.47242 * 150.00212 * 3 2 1 7 7 C 1.38655 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00222 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00154 * 174.97554 * 9 7 2 11 11 C 1.38945 * 120.03668 * 185.37225 * 10 9 7 12 12 C 1.38119 * 120.07481 * 180.02562 * 11 10 9 13 13 C 1.38201 * 120.13689 * 359.97438 * 12 11 10 14 14 C 1.38923 * 120.07009 * 0.02562 * 13 12 11 15 15 N 1.39914 * 120.03921 * 179.97438 * 14 13 12 16 16 C 1.34774 * 120.00201 * 324.88770 * 15 14 13 17 17 O 1.21290 * 119.99693 * 4.22907 * 16 15 14 18 18 C 1.50702 * 120.00220 * 184.22807 * 16 15 14 19 19 H 1.08997 * 110.28298 * 37.88422 * 18 16 15 20 20 C 1.54170 * 110.32006 * 275.66316 * 18 16 15 21 21 C 1.53876 * 108.70487 * 213.19109 * 20 18 16 22 22 C 1.55050 * 106.62502 * 47.17770 * 21 20 18 23 23 S 1.82917 * 110.31691 * 160.00336 * 18 16 15 24 24 O 1.42110 * 109.35154 * 234.42461 * 23 18 16 25 25 O 1.42092 * 109.35736 * 7.62617 * 23 18 16 26 26 C 1.38732 * 120.02989 * 5.62699 * 10 9 7 27 27 H 0.97006 * 119.99996 * 359.97438 * 1 2 3 28 28 H 1.08008 * 119.96393 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.93712 * 179.97438 * 12 11 10 30 30 H 1.08003 * 119.96758 * 180.02562 * 13 12 11 31 31 H 0.97002 * 120.00020 * 144.61136 * 15 14 13 32 32 H 1.08999 * 109.64319 * 333.04292 * 20 18 16 33 33 H 1.09002 * 109.64505 * 93.33559 * 20 18 16 34 34 H 1.08998 * 110.02402 * 287.89040 * 21 20 18 35 35 H 1.08997 * 110.02502 * 166.47484 * 21 20 18 36 36 H 1.08996 * 110.78882 * 199.29797 * 22 21 20 37 37 H 1.09006 * 110.95048 * 75.91195 * 22 21 20 38 38 H 1.08006 * 120.07349 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6526 0.7002 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1070 11 6 1.4353 -4.7351 -0.2259 12 6 2.1825 -5.8916 -0.3337 13 6 3.5631 -5.8291 -0.3243 14 6 4.2036 -4.6021 -0.2057 15 7 5.6013 -4.5396 -0.1958 16 6 6.3156 -5.5226 0.3872 17 8 5.7514 -6.4984 0.8351 18 6 7.8154 -5.4095 0.4824 19 1 8.1043 -4.3787 0.6877 20 6 8.4734 -5.9024 -0.8218 21 6 9.8224 -6.5573 -0.4771 22 6 9.5594 -7.5140 0.7144 23 16 8.4546 -6.5204 1.7874 24 8 9.2391 -5.7685 2.7033 25 8 7.3985 -7.3422 2.2653 26 6 3.4555 -3.4390 -0.0919 27 1 -0.4850 0.8401 0.0004 28 1 0.3565 -4.7872 -0.2331 29 1 1.6870 -6.8468 -0.4256 30 1 4.1447 -6.7352 -0.4092 31 1 6.0563 -3.7908 -0.6119 32 1 7.8248 -6.6323 -1.3063 33 1 8.6363 -5.0582 -1.4918 34 1 10.5454 -5.7938 -0.1901 35 1 10.1936 -7.1205 -1.3333 36 1 10.4889 -7.7526 1.2314 37 1 9.0595 -8.4235 0.3810 38 1 3.9510 -2.4842 0.0049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694071053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:21 Heat of formation + Delta-G solvation = -122.204978 kcal Electronic energy + Delta-G solvation = -25021.572800 eV Core-core repulsion = 21149.528453 eV Total energy + Delta-G solvation = -3872.044347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73276 -40.44659 -38.32007 -38.04656 -37.22289 -36.75821 -35.72966 -34.24619 -31.92668 -30.84698 -29.92802 -27.36358 -26.68548 -23.90391 -23.52397 -22.55565 -21.64424 -20.08445 -19.74401 -19.29085 -18.62037 -17.94236 -17.31589 -16.99636 -16.81066 -16.49009 -16.40871 -15.89227 -15.74535 -15.54265 -15.37078 -15.00465 -14.78289 -14.59042 -14.21388 -13.69743 -13.57587 -13.31200 -13.19647 -13.08019 -12.98849 -12.82898 -12.79068 -12.66015 -12.47636 -12.12233 -11.98347 -11.65292 -11.48802 -11.29754 -11.22092 -10.91091 -10.72719 -9.40029 -8.92884 -8.47107 -6.16331 -1.02380 0.33388 0.67132 1.35629 1.37490 1.46078 1.53369 1.55295 1.80519 2.17541 2.66934 2.81633 2.96614 3.14770 3.36787 3.45449 3.48376 3.71725 3.81054 4.02692 4.09501 4.20094 4.31632 4.42058 4.57306 4.61788 4.69538 4.70765 4.99524 5.00799 5.04976 5.10035 5.14655 5.34802 5.41725 5.63177 5.65608 6.00522 6.12627 6.31462 6.95470 6.97247 7.76307 8.75948 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.003116 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.118256 B = 8983.147004 C = 9850.616700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.226 6.226 10 C 0.133 3.867 11 C -0.211 4.211 12 C -0.054 4.054 13 C -0.200 4.200 14 C 0.180 3.820 15 N -0.651 5.651 16 C 0.525 3.475 17 O -0.520 6.520 18 C -0.587 4.587 19 H 0.189 0.811 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.556 4.556 23 S 2.382 3.618 24 O -0.971 6.971 25 O -0.956 6.956 26 C -0.259 4.259 27 H 0.273 0.727 28 H 0.119 0.881 29 H 0.154 0.846 30 H 0.138 0.862 31 H 0.427 0.573 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.994 -11.655 -5.751 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.175 1.175 7 C -0.491 4.491 8 H 0.122 0.878 9 O -0.133 6.133 10 C 0.082 3.918 11 C -0.231 4.231 12 C -0.073 4.073 13 C -0.220 4.220 14 C 0.086 3.914 15 N -0.298 5.298 16 C 0.311 3.689 17 O -0.394 6.394 18 C -0.697 4.697 19 H 0.206 0.794 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.690 4.690 23 S 2.567 3.433 24 O -0.968 6.968 25 O -0.953 6.953 26 C -0.280 4.280 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.172 0.828 30 H 0.156 0.844 31 H 0.266 0.734 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 24.021 -12.188 -4.379 27.289 hybrid contribution -0.145 1.397 -0.573 1.517 sum 23.876 -10.791 -4.952 26.665 Atomic orbital electron populations 1.70190 1.08118 1.28859 1.48644 1.26612 0.96831 1.02795 0.95761 0.84580 0.77821 0.74434 0.79328 1.18520 1.19938 1.17505 1.21834 0.92590 0.81303 1.53377 0.87814 1.83980 1.35634 1.12490 1.81166 1.19590 0.90756 0.88041 0.93433 1.20516 1.00291 0.90407 1.11889 1.20959 0.93170 0.97461 0.95667 1.21048 0.94763 0.96939 1.09268 1.17449 0.82716 0.93396 0.97868 1.43314 1.03823 1.26111 1.56504 1.19989 0.88450 0.82763 0.77695 1.90972 1.71880 1.30614 1.45960 1.30724 0.98352 1.20585 1.19996 0.79371 1.22132 0.96039 1.03769 0.92217 1.22390 0.96824 0.97974 0.98236 1.30511 1.15133 1.11502 1.11844 1.09357 0.77170 0.78323 0.78402 1.93580 1.70415 1.72448 1.60389 1.93654 1.55854 1.66538 1.79260 1.20873 0.93238 0.98654 1.15246 0.91816 0.86293 0.82844 0.84424 0.73449 0.89376 0.85187 0.87110 0.85003 0.81853 0.82785 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.96 13.67 21.61 0.30 -55.66 16 2 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 3 Si 1.02 41.62 29.55 68.60 2.03 43.65 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.42 -23.63 9.49 67.92 0.64 -22.99 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.49 9.76 -22.76 -0.22 -13.72 16 10 C 0.13 6.63 6.64 22.56 0.15 6.78 16 11 C -0.21 -9.22 9.99 22.41 0.22 -9.00 16 12 C -0.05 -1.97 10.03 22.23 0.22 -1.75 16 13 C -0.20 -7.28 8.69 22.43 0.19 -7.09 16 14 C 0.18 6.55 6.29 38.14 0.24 6.79 16 15 N -0.65 -17.11 5.33 -303.55 -1.62 -18.73 16 16 C 0.53 13.47 6.75 87.66 0.59 14.06 16 17 O -0.52 -18.07 11.67 19.67 0.23 -17.84 16 18 C -0.59 -8.31 3.61 30.25 0.11 -8.20 16 19 H 0.19 1.56 8.14 -2.39 -0.02 1.54 16 20 C -0.10 -0.57 5.93 31.29 0.19 -0.38 16 21 C -0.12 -0.17 6.48 31.59 0.20 0.03 16 22 C -0.56 -3.43 7.31 72.68 0.53 -2.90 16 23 S 2.38 44.67 5.92 -56.49 -0.33 44.34 16 24 O -0.97 -23.87 18.15 -127.49 -2.31 -26.19 16 25 O -0.96 -29.58 15.41 -118.56 -1.83 -31.41 16 26 C -0.26 -11.11 9.08 22.51 0.20 -10.90 16 27 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 28 H 0.12 5.06 8.06 -2.91 -0.02 5.03 16 29 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 30 H 0.14 4.76 6.23 -2.91 -0.02 4.74 16 31 H 0.43 7.82 8.82 -92.71 -0.82 7.00 16 32 H 0.09 0.61 7.85 -2.39 -0.02 0.59 16 33 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.15 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.13 5.49 5.64 -2.91 -0.02 5.47 16 Total: -1.00 -91.63 333.58 0.51 -91.12 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.30 Total: 20.76 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 3.97 Total: -36.32 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.32 Total: -74.40 kcal Atomic # 8 Polarization: -85.02 SS G_CDS: -4.13 Total: -89.15 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 44.67 SS G_CDS: -0.33 Total: 44.34 kcal Total: -91.63 0.51 -91.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694071053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.085 kcal (2) G-P(sol) polarization free energy of solvation -91.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds