Wall clock time and date at job start Tue Mar 31 2020 13:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 120.00009 * 2 1 4 4 H 1.48494 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47198 * 300.00397 * 3 2 1 6 6 H 1.48497 * 109.47222 * 60.00033 * 3 2 1 7 7 C 1.37873 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99951 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46734 * 180.02562 * 9 7 2 11 11 C 1.46509 * 119.99998 * 269.99866 * 10 9 7 12 12 C 1.52998 * 109.46865 * 90.00259 * 11 10 9 13 13 C 1.52998 * 117.50014 * 243.62133 * 12 11 10 14 14 C 1.52995 * 117.49762 * 174.99794 * 12 11 10 15 15 C 1.34774 * 120.00129 * 90.00146 * 10 9 7 16 16 S 1.71202 * 119.99849 * 0.02562 * 15 10 9 17 17 N 1.34778 * 119.99932 * 179.97438 * 15 10 9 18 18 C 1.39984 * 119.99413 * 174.48283 * 17 15 10 19 19 C 1.39314 * 120.46579 * 138.64137 * 18 17 15 20 20 C 1.38462 * 118.36765 * 179.97438 * 19 18 17 21 21 C 1.38422 * 119.22840 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 119.55538 * 180.02562 * 21 20 19 23 23 N 1.31929 * 120.88969 * 359.97438 * 21 20 19 24 24 C 1.31857 * 121.77623 * 359.70896 * 23 21 20 25 25 H 0.97000 * 119.99354 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47077 * 299.99985 * 9 7 2 27 27 H 1.09000 * 109.46662 * 60.00277 * 9 7 2 28 28 H 1.08998 * 109.46862 * 210.00139 * 11 10 9 29 29 H 1.08998 * 109.46997 * 330.00142 * 11 10 9 30 30 H 1.09007 * 115.54931 * 29.33334 * 12 11 10 31 31 H 1.08996 * 117.49534 * 0.02562 * 13 12 11 32 32 H 1.09006 * 117.49824 * 145.02397 * 13 12 11 33 33 H 1.09001 * 117.50131 * 214.98263 * 14 12 11 34 34 H 1.09000 * 117.49963 * 0.02562 * 14 12 11 35 35 H 0.96992 * 120.00413 * 354.48858 * 17 15 10 36 36 H 1.07994 * 120.81422 * 359.97206 * 19 18 17 37 37 H 1.08004 * 120.38046 * 179.97438 * 20 19 18 38 38 H 1.08005 * 119.66067 * 180.30584 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6790 -4.1694 -1.2693 12 6 3.9411 -3.4259 -1.7110 13 6 3.8716 -2.6289 -3.0151 14 6 4.6621 -3.9377 -2.9596 15 6 2.6409 -4.1249 1.1666 16 16 2.0841 -3.4747 2.6493 17 7 3.5163 -5.1496 1.1666 18 6 4.0597 -5.6058 2.3733 19 6 4.2075 -6.9707 2.6101 20 6 4.7504 -7.3738 3.8184 21 6 5.1251 -6.4154 4.7442 22 17 5.8074 -6.9112 6.2616 23 7 4.9717 -5.1302 4.4887 24 6 4.4646 -4.7048 3.3483 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 0.8896 27 1 0.6240 -2.5566 -0.8903 28 1 2.9073 -5.2272 -1.1390 29 1 1.9056 -4.0556 -2.0290 30 1 4.5546 -3.0216 -0.9057 31 1 2.9266 -2.6339 -3.5582 32 1 4.4394 -1.6999 -3.0681 33 1 5.7498 -3.8698 -2.9760 34 1 4.2370 -4.8039 -3.4666 35 1 3.7699 -5.5709 0.3305 36 1 3.9059 -7.6965 1.8695 37 1 4.8792 -8.4238 4.0362 38 1 4.3589 -3.6443 3.1730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728790339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:17 Heat of formation + Delta-G solvation = 88.440404 kcal Electronic energy + Delta-G solvation = -22626.897703 eV Core-core repulsion = 19236.989542 eV Total energy + Delta-G solvation = -3389.908162 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65466 -39.17889 -37.13874 -36.53237 -35.27334 -32.75913 -32.34200 -29.88054 -28.47069 -27.03496 -24.38129 -23.76078 -22.55414 -22.31028 -21.71863 -20.45045 -18.34364 -17.94041 -17.24328 -16.61528 -16.41470 -15.61671 -15.50306 -14.78055 -14.46877 -14.41075 -14.16548 -13.60439 -13.45023 -13.37654 -12.75582 -12.66364 -12.37809 -11.85918 -11.58171 -11.46088 -11.44945 -11.32639 -11.01249 -10.79218 -10.63830 -10.36301 -10.19148 -10.14712 -9.89801 -9.85305 -9.61152 -9.16783 -8.49736 -8.17507 -7.09699 -6.49003 -6.11117 -4.13987 0.76544 1.14391 1.79457 1.93924 2.40146 3.02484 3.27380 3.37086 3.37939 3.47746 3.67227 3.84858 4.39935 4.53121 4.66796 4.71818 4.80669 4.81661 4.92352 5.00987 5.21399 5.26016 5.33546 5.50877 5.53783 5.59685 5.63718 5.84581 6.02103 6.14501 6.21673 6.23784 6.30713 6.67526 6.95795 7.26667 7.35729 7.73069 7.81462 7.83588 8.05250 8.83917 9.48864 10.97937 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.003798 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.725896 B = 7370.695735 C = 8476.693877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.236 3.764 10 N -0.523 5.523 11 C 0.125 3.875 12 C -0.162 4.162 13 C -0.155 4.155 14 C -0.185 4.185 15 C 0.547 3.453 16 S -0.616 6.616 17 N -0.649 5.649 18 C 0.107 3.893 19 C -0.083 4.083 20 C -0.151 4.151 21 C 0.165 3.835 22 Cl -0.042 7.042 23 N -0.467 5.467 24 C 0.168 3.832 25 H 0.264 0.736 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.403 0.597 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.434 -16.175 -3.152 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.118 3.882 10 N -0.225 5.225 11 C -0.002 4.002 12 C -0.182 4.182 13 C -0.192 4.192 14 C -0.223 4.223 15 C 0.190 3.810 16 S -0.482 6.482 17 N -0.281 5.281 18 C 0.009 3.991 19 C -0.112 4.112 20 C -0.173 4.173 21 C 0.001 3.999 22 Cl -0.013 7.013 23 N -0.178 5.178 24 C 0.005 3.995 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.243 0.757 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.066 -14.926 -1.568 18.071 hybrid contribution 0.532 -0.171 -1.706 1.795 sum 10.598 -15.098 -3.275 18.734 Atomic orbital electron populations 1.69924 1.05930 1.27038 1.50042 1.24803 0.94794 0.98965 0.94890 0.86446 0.79933 0.83484 0.77578 1.19880 1.21174 1.20738 1.21072 0.93083 0.89418 1.51462 0.92283 1.20098 0.86815 0.80769 1.00508 1.47954 1.41129 1.32077 1.01358 1.21405 0.96225 0.95487 0.87075 1.22594 0.98622 1.04227 0.92745 1.22908 1.01947 0.94945 0.99425 1.23010 0.99053 0.98732 1.01512 1.22405 0.82540 0.82856 0.93195 1.93362 1.70979 1.71100 1.12731 1.42242 1.43739 1.33866 1.08228 1.18465 0.98656 0.93174 0.88766 1.21271 0.98920 0.93829 0.97219 1.21479 1.02290 1.00443 0.93123 1.21660 0.98495 0.90678 0.89105 1.98386 1.83007 1.89646 1.30276 1.67180 1.14459 1.15560 1.20645 1.23298 0.88088 1.01817 0.86335 0.92678 0.90286 0.94334 0.91436 0.88626 0.87450 0.88441 0.88717 0.88933 0.88952 0.75682 0.83920 0.83749 0.79728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -13.07 9.39 -34.44 -0.32 -13.39 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.24 5.47 4.97 -5.19 -0.03 5.44 16 10 N -0.52 -9.38 2.46 -177.08 -0.43 -9.82 16 11 C 0.12 1.62 5.55 -4.04 -0.02 1.60 16 12 C -0.16 -2.09 6.01 -90.62 -0.54 -2.63 16 13 C -0.16 -1.95 10.18 -26.73 -0.27 -2.23 16 14 C -0.19 -1.82 10.25 -26.73 -0.27 -2.09 16 15 C 0.55 9.89 7.47 -86.92 -0.65 9.24 16 16 S -0.62 -14.18 24.46 -107.50 -2.63 -16.81 16 17 N -0.65 -8.73 5.22 -11.29 -0.06 -8.79 16 18 C 0.11 1.47 5.94 -83.53 -0.50 0.97 16 19 C -0.08 -0.88 10.11 -39.10 -0.40 -1.28 16 20 C -0.15 -1.61 9.87 -39.43 -0.39 -2.00 16 21 C 0.16 2.22 7.27 -17.44 -0.13 2.10 16 22 Cl -0.04 -0.50 29.10 -51.86 -1.51 -2.00 16 23 N -0.47 -7.57 10.33 -10.21 -0.11 -7.68 16 24 C 0.17 2.74 9.04 -17.33 -0.16 2.58 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.08 2.12 6.58 -51.93 -0.34 1.78 16 27 H 0.04 0.91 7.89 -51.93 -0.41 0.50 16 28 H 0.07 0.65 6.29 -51.93 -0.33 0.32 16 29 H 0.10 1.22 7.63 -51.93 -0.40 0.82 16 30 H 0.11 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.10 1.21 8.03 -51.93 -0.42 0.80 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 4.05 6.52 -40.82 -0.27 3.78 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.19 3.46 6.25 -49.83 -0.31 3.14 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -31.44 351.21 -12.05 -43.49 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.55 Total: 4.49 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.77 Total: 0.05 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.14 Total: -50.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -14.18 SS G_CDS: -2.63 Total: -16.81 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.44 -12.05 -43.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728790339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.935 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds