Wall clock time and date at job start Tue Mar 31 2020 14:06:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.39646 * 120.07411 * 2 1
4 4 C 1.47724 * 120.14981 * 0.04252 * 3 2 1
5 5 O 1.21465 * 120.00479 * 5.21469 * 4 3 2
6 6 O 1.34717 * 120.00153 * 185.21877 * 4 3 2
7 7 C 1.39610 * 119.70167 * 180.02562 * 3 2 1
8 8 C 1.37969 * 119.84661 * 359.72443 * 7 3 2
9 9 C 1.38348 * 120.14660 * 0.55032 * 8 7 3
10 10 C 1.37919 * 120.07702 * 180.02562 * 2 1 3
11 11 S 1.76202 * 119.92422 * 0.02562 * 10 2 1
12 12 O 1.42095 * 106.40411 * 48.51599 * 11 10 2
13 13 O 1.42105 * 106.40195 * 181.43963 * 11 10 2
14 14 N 1.65608 * 107.21828 * 294.97477 * 11 10 2
15 15 C 1.36934 * 119.99698 * 90.00205 * 14 11 10
16 16 H 1.08003 * 119.99508 * 230.73606 * 15 14 11
17 17 C 1.38811 * 120.00299 * 50.73503 * 15 14 11
18 18 N 1.31616 * 119.99848 * 21.17102 * 17 15 14
19 19 Si 1.86795 * 119.99967 * 201.17201 * 17 15 14
20 20 H 1.48497 * 109.47573 * 60.00212 * 19 17 15
21 21 H 1.48504 * 109.47183 * 179.97438 * 19 17 15
22 22 H 1.48504 * 109.47203 * 299.99731 * 19 17 15
23 23 C 1.46496 * 119.99796 * 270.00229 * 14 11 10
24 24 C 1.53003 * 117.49405 * 188.79578 * 23 14 11
25 25 C 1.52995 * 60.00165 * 252.51143 * 24 23 14
26 26 H 1.09007 * 109.46873 * 275.57789 * 1 2 3
27 27 H 1.09000 * 109.47060 * 35.57815 * 1 2 3
28 28 H 1.09000 * 109.47229 * 155.58382 * 1 2 3
29 29 H 0.96690 * 117.00197 * 179.97438 * 6 4 3
30 30 H 1.08000 * 120.08146 * 179.97438 * 7 3 2
31 31 H 1.07996 * 119.92710 * 180.29531 * 8 7 3
32 32 H 1.08000 * 119.84736 * 179.72934 * 9 8 7
33 33 H 0.96999 * 119.99942 * 184.70212 * 18 17 15
34 34 H 1.08996 * 115.55638 * 334.50319 * 23 14 11
35 35 H 1.08992 * 117.50037 * 0.02562 * 24 23 14
36 36 H 1.09003 * 117.49770 * 145.02189 * 24 23 14
37 37 H 1.09006 * 117.50029 * 252.51376 * 25 24 23
38 38 H 1.09003 * 117.49979 * 107.48835 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2068 1.2085 0.0000
4 6 1.4732 2.4907 0.0009
5 8 0.2624 2.4976 0.0973
6 8 2.1471 3.6524 -0.1052
7 6 3.6029 1.1994 -0.0005
8 6 4.2817 -0.0017 0.0047
9 6 3.5821 -1.1953 -0.0010
10 6 2.1982 -1.1935 -0.0005
11 16 1.3173 -2.7195 -0.0019
12 8 0.3350 -2.6148 -1.0234
13 8 2.2968 -3.7484 0.0320
14 7 0.4932 -2.8110 1.4317
15 6 -0.7783 -2.3111 1.5236
16 1 -1.0351 -1.6323 2.3234
17 6 -1.7371 -2.6767 0.5887
18 7 -1.5844 -3.7790 -0.1140
19 14 -3.2441 -1.6041 0.3281
20 1 -2.8185 -0.2492 -0.1057
21 1 -4.1078 -2.2094 -0.7173
22 1 -4.0041 -1.5007 1.5998
23 6 1.1245 -3.4269 2.6014
24 6 0.2480 -3.6686 3.8319
25 6 1.3004 -2.5582 3.8486
26 1 -0.3633 0.0999 1.0229
27 1 -0.3633 0.8358 -0.5979
28 1 -0.3634 -0.9357 -0.4248
29 1 1.6238 4.4654 -0.1003
30 1 4.1503 2.1304 -0.0010
31 1 5.3617 -0.0102 0.0091
32 1 4.1185 -2.1327 -0.0013
33 1 -2.2183 -3.9994 -0.8143
34 1 1.9017 -4.1598 2.3849
35 1 -0.7984 -3.3698 3.7710
36 1 0.4483 -4.5608 4.4252
37 1 2.1932 -2.7199 4.4527
38 1 0.9464 -1.5284 3.7986
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000738275864.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:06:51
Heat of formation + Delta-G solvation = -87.008330 kcal
Electronic energy + Delta-G solvation = -27101.338928 eV
Core-core repulsion = 23230.820822 eV
Total energy + Delta-G solvation = -3870.518106 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 325.086 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.34550 -38.39876 -37.23614 -36.11082 -35.84026 -34.25155 -33.37145 -32.21881
-31.20826 -30.64492 -26.80306 -24.98468 -24.09608 -22.31420 -21.58633 -20.77347
-20.48539 -18.94562 -18.25010 -17.37266 -16.45584 -16.08202 -15.67589 -15.54180
-15.48126 -15.09708 -14.78942 -14.24186 -13.94968 -13.59918 -13.33340 -13.02918
-12.85783 -12.37643 -11.99885 -11.90455 -11.74736 -11.58510 -11.44577 -11.37771
-11.31995 -10.95745 -10.74288 -10.65686 -10.48643 -10.39850 -10.29255 -10.00122
-9.92896 -9.42524 -9.30292 -8.98600 -8.63842 -8.49572 -7.59323 -6.56046
-4.24400 0.86421 1.42305 1.89159 2.67961 3.12218 3.21324 3.27485
3.31690 3.84010 4.09928 4.50024 4.67941 4.87057 5.00176 5.09164
5.13420 5.22455 5.50269 5.59674 5.70126 5.74688 5.82133 5.94377
5.99251 6.10478 6.25331 6.28700 6.36690 6.44642 6.46830 6.56199
6.64153 6.71225 6.91041 6.97296 7.07424 7.32606 7.35373 7.45741
8.02965 8.14445 8.80888 9.23998 10.47281
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.012057 B = 0.007179 C = 0.005750
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2321.677024 B = 3899.327409 C = 4868.483926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.096 3.904
3 C -0.170 4.170
4 C 0.524 3.476
5 O -0.501 6.501
6 O -0.519 6.519
7 C -0.030 4.030
8 C -0.174 4.174
9 C 0.003 3.997
10 C -0.682 4.682
11 S 2.567 3.433
12 O -0.940 6.940
13 O -1.012 7.012
14 N -0.786 5.786
15 C -0.273 4.273
16 H 0.083 0.917
17 C 0.060 3.940
18 N -0.772 5.772
19 Si 0.905 3.095
20 H -0.256 1.256
21 H -0.280 1.280
22 H -0.271 1.271
23 C 0.097 3.903
24 C -0.162 4.162
25 C -0.213 4.213
26 H 0.096 0.904
27 H 0.085 0.915
28 H 0.122 0.878
29 H 0.409 0.591
30 H 0.134 0.866
31 H 0.129 0.871
32 H 0.139 0.861
33 H 0.283 0.717
34 H 0.119 0.881
35 H 0.109 0.891
36 H 0.084 0.916
37 H 0.083 0.917
38 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.374 8.328 3.240 10.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.095 3.905
3 C -0.172 4.172
4 C 0.369 3.631
5 O -0.390 6.390
6 O -0.331 6.331
7 C -0.048 4.048
8 C -0.193 4.193
9 C -0.016 4.016
10 C -0.758 4.758
11 S 2.665 3.335
12 O -0.928 6.928
13 O -1.002 7.002
14 N -0.607 5.607
15 C -0.421 4.421
16 H 0.101 0.899
17 C -0.159 4.159
18 N -0.408 5.408
19 Si 0.729 3.271
20 H -0.180 1.180
21 H -0.205 1.205
22 H -0.196 1.196
23 C -0.012 4.012
24 C -0.201 4.201
25 C -0.253 4.253
26 H 0.114 0.886
27 H 0.103 0.897
28 H 0.140 0.860
29 H 0.267 0.733
30 H 0.151 0.849
31 H 0.147 0.853
32 H 0.157 0.843
33 H 0.093 0.907
34 H 0.137 0.863
35 H 0.127 0.873
36 H 0.102 0.898
37 H 0.102 0.898
38 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 6.502 7.250 2.305 10.007
hybrid contribution -0.463 1.867 -0.050 1.924
sum 6.038 9.117 2.255 11.165
Atomic orbital electron populations
1.22309 0.88399 1.07445 1.04966 1.19808 0.97271 0.89491 0.83977
1.19017 0.93731 0.90008 1.14396 1.20950 0.85567 0.84002 0.72539
1.90878 1.15009 1.87396 1.45709 1.84557 1.45468 1.17087 1.86025
1.21475 0.92768 0.98647 0.91901 1.21171 1.00049 0.92403 1.05644
1.21269 0.92897 0.98881 0.88510 1.32613 1.06049 1.23913 1.13185
1.10676 0.72067 0.74003 0.76712 1.93382 1.56404 1.85278 1.57725
1.93279 1.62999 1.56187 1.87742 1.52311 1.18687 1.64656 1.25096
1.18925 0.83082 1.24742 1.15353 0.89894 1.25676 0.98698 0.94352
0.97129 1.69841 1.35874 1.18401 1.16638 0.86363 0.80691 0.81508
0.78495 1.17992 1.20530 1.19607 1.21384 0.99381 0.98122 0.82346
1.23070 0.98156 0.98860 1.00038 1.23341 1.00813 0.97324 1.03844
0.88563 0.89688 0.86019 0.73294 0.84862 0.85281 0.84332 0.90659
0.86302 0.87293 0.89787 0.89825 0.89037
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.83 6.09 36.01 0.22 -3.61 16
2 C 0.10 1.98 5.91 -104.21 -0.62 1.36 16
3 C -0.17 -3.01 5.87 -104.98 -0.62 -3.63 16
4 C 0.52 8.52 8.21 34.61 0.28 8.81 16
5 O -0.50 -9.37 14.09 -19.24 -0.27 -9.64 16
6 O -0.52 -6.11 12.69 -40.54 -0.51 -6.63 16
7 C -0.03 -0.44 9.62 -39.17 -0.38 -0.82 16
8 C -0.17 -2.60 10.03 -39.64 -0.40 -2.99 16
9 C 0.00 0.06 9.55 -39.48 -0.38 -0.31 16
10 C -0.68 -14.40 5.90 -39.64 -0.23 -14.64 16
11 S 2.57 62.37 4.94 -107.50 -0.53 61.84 16
12 O -0.94 -25.29 11.82 -57.17 -0.68 -25.97 16
13 O -1.01 -25.88 15.74 -57.17 -0.90 -26.78 16
14 N -0.79 -18.15 3.03 -53.43 -0.16 -18.31 16
15 C -0.27 -6.39 4.61 -15.06 -0.07 -6.46 16
16 H 0.08 1.83 7.67 -52.48 -0.40 1.43 16
17 C 0.06 1.47 3.38 -17.43 -0.06 1.41 16
18 N -0.77 -20.45 11.43 55.49 0.63 -19.81 16
19 Si 0.91 19.39 28.36 -169.99 -4.82 14.57 16
20 H -0.26 -5.45 6.85 56.52 0.39 -5.06 16
21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16
23 C 0.10 1.96 6.39 -67.93 -0.43 1.52 16
24 C -0.16 -2.84 9.84 -26.73 -0.26 -3.11 16
25 C -0.21 -3.61 10.27 -26.73 -0.27 -3.88 16
26 H 0.10 2.05 7.06 -51.93 -0.37 1.68 16
27 H 0.08 1.82 5.75 -51.93 -0.30 1.52 16
28 H 0.12 2.92 2.42 -51.93 -0.13 2.79 16
29 H 0.41 2.84 9.11 45.56 0.42 3.25 16
30 H 0.13 1.58 7.62 -52.49 -0.40 1.18 16
31 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16
32 H 0.14 2.38 7.32 -52.49 -0.38 1.99 16
33 H 0.28 7.17 8.32 -40.82 -0.34 6.83 16
34 H 0.12 2.38 7.37 -51.93 -0.38 2.00 16
35 H 0.11 2.03 7.04 -51.93 -0.37 1.67 16
36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16
38 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16
LS Contribution 321.00 15.07 4.84 4.84
Total: -1.00 -31.13 321.00 -8.77 -39.90
By element:
Atomic # 1 Polarization: 15.49 SS G_CDS: -3.15 Total: 12.34 kcal
Atomic # 6 Polarization: -23.13 SS G_CDS: -3.21 Total: -26.35 kcal
Atomic # 7 Polarization: -38.59 SS G_CDS: 0.47 Total: -38.12 kcal
Atomic # 8 Polarization: -66.66 SS G_CDS: -2.36 Total: -69.02 kcal
Atomic # 14 Polarization: 19.39 SS G_CDS: -4.82 Total: 14.57 kcal
Atomic # 16 Polarization: 62.37 SS G_CDS: -0.53 Total: 61.84 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -31.13 -8.77 -39.90 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000738275864.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.108 kcal
(2) G-P(sol) polarization free energy of solvation -31.131 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds